3300020039: Rumen fluid microbial communities from healthy moose, Palmer, Alaska- post 0.2 um filtrate Viral contigs

Overview

Basic Information

• IMG/M Taxon OID: 3300020039
• GOLD Reference (Study | Sequencing Project | Analysis Project): Gs0121650 | Gp0161001 | Ga0207352
• Sample Name: Rumen fluid microbial communities from healthy moose, Palmer, Alaska- post 0.2 um filtrate Viral contigs
• Sequencing Status: Permanent Draft
• Sequencing Center: Ohio State University
• Published?: N
• Use Policy: Open

Dataset Contents

• Total Genome Size: 20041029
• Sequencing Scaffolds: 7
• Novel Protein Genes: 8
• Associated Families: 8

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales	1
Not Available	2
All Organisms → Viruses	1
All Organisms → cellular organisms → Archaea → Euryarchaeota → Methanomada group → Methanobacteria → Methanobacteriales → Methanobacteriaceae → Methanobrevibacter → unclassified Methanobrevibacter → Methanobrevibacter sp.	1
All Organisms → cellular organisms → Bacteria	1
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → Caudovirales	1

Ecosystem and Geography

Ecosystem Assignment (GOLD)

• Name: Rumen Microbial Communities From Healthy Moose, Palmer, Alaska
• Type: Host-Associated
• Taxonomy: Host-Associated → Mammals → Digestive System → Foregut → Rumen → Moose Rumen → Rumen Microbial Communities From Healthy Moose, Palmer, Alaska

Alternative Ecosystem Assignments

• Environment Ontology (ENVO): Unclassified
• Earth Microbiome Project Ontology (EMPO): Host-associated → Animal → Animal proximal gut

Location Information

• Location: Palmer, Alaska
• Coordinates
  • Lat. (^o): 61.5997
  • Long. (^o): -148.1128
  • Alt. (m): N/A
  • Depth (m): N/A

Associated Families

Family	Category	Number of Sequences	3D Structure?
F017772	Metagenome / Metatranscriptome	238	Y
F036964	Metagenome / Metatranscriptome	169	Y
F053097	Metagenome / Metatranscriptome	141	Y
F058536	Metagenome	135	Y
F067315	Metagenome / Metatranscriptome	125	Y
F076729	Metagenome / Metatranscriptome	117	Y
F077963	Metagenome	117	N
F094711	Metagenome	105	Y

Associated Scaffolds

Scaffold	Taxonomy	Length
Ga0207352_1058	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales	22545
Ga0207352_1170	Not Available	28379
Ga0207352_1427	All Organisms → Viruses	105545
Ga0207352_1668	All Organisms → cellular organisms → Archaea → Euryarchaeota → Methanomada group → Methanobacteria → Methanobacteriales → Methanobacteriaceae → Methanobrevibacter → unclassified Methanobrevibacter → Methanobrevibacter sp.	29814
Ga0207352_1725	Not Available	46360
Ga0207352_1797	All Organisms → cellular organisms → Bacteria	36014
Ga0207352_1840	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → Caudovirales	151571

Sequences

Scaffold ID	Protein ID	Family	Sequence
Ga0207352_1058	Ga0207352_105827	F077963	MQKLFKRLLDLLNIHPDENQRWTLSTLFIVGLLDAYVEPAISKAWVTELPAEWLAFQSLVYSVVGLFIGMIWKDWVRRKAIQWFTVLCIIESAAGFCVGMWLCFVEYNVWVLAIACLLYGTLVSGFIGKCLMTFRPKLWNEHEREVYDNNNDVVCGIYCIAGYVCALLFMPSLKVAMFIWGLCCAIDNIGWLVVYHRNKDKFTED
Ga0207352_1058	Ga0207352_10585	F058536	MKTLALSELRRVAERSQMVNRKLPNGKYEQVAERIPFRVWYVAASNGDCILGEECVTLAVYTDGPGAYPSRLVQFTASGQTRRLRDCCILRADDFILRV
Ga0207352_1170	Ga0207352_117053	F036964	MNNLVDILKIVFPALMVTGALGSLIVNIFTKGDWPVSLQWFGAMLLYTALLFRNK
Ga0207352_1427	Ga0207352_14279	F053097	MFDIRGDKISLNAEDLAIPPFKDHYNNAKDKSLALKEIEYIIWLYKWNTPYEAYPVDQRPKIVAKDVFKDEKYVPTAEVKELAKRFNEFQETPGTRLLSASQSAAEGLIAALNEYS
Ga0207352_1668	Ga0207352_166835	F076729	MNLTDNEILKFQKGSPILLDDICAIYPATLGEIVDEGYDNF
Ga0207352_1725	Ga0207352_172551	F067315	MNDFDKNLEFVSNILQILSYEILVKDFNNTDLMKYLAHQDQLLDKIIKQNEEIIKLLKGE
Ga0207352_1797	Ga0207352_17976	F094711	MTIAIWIIAIVELIRAAQNMVQILALRHEMANKDNAYAEYIKSLHMTDREFVRRMLEEFERQDG
Ga0207352_1840	Ga0207352_184025	F017772	MADVRMKLLPPWSIVIKKIEALFDGDPTIACNVNYSEPSIVLACNDGDKVTALQQILPECISFGNINLKVAVDGIPSNRAFTSRKELFDVAFAKNPAFAYALCPVEEGYQWMAFTYVVFKNCVVQIPADNLNDCHGIISTLYQTIAEEILTGKGAENCLFNTDVEVANLGKSPDQWL