3300019764: Microbial mat bacterial communities from the Broadkill River, Lewes, Delaware, United States - FB_6_MG

Overview

Basic Information

• IMG/M Taxon OID: 3300019764
• GOLD Reference (Study | Sequencing Project | Analysis Project): Gs0129088 | Gp0217629 | Ga0193963
• Sample Name: Microbial mat bacterial communities from the Broadkill River, Lewes, Delaware, United States - FB_6_MG
• Sequencing Status: Permanent Draft
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Published?: N
• Use Policy: Open

Dataset Contents

• Total Genome Size: 364572675
• Sequencing Scaffolds: 4
• Novel Protein Genes: 4
• Associated Families: 4

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
Not Available	3
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Saprospiria → Saprospirales → Saprospiraceae → unclassified Saprospiraceae → Saprospiraceae bacterium	1

Ecosystem and Geography

Ecosystem Assignment (GOLD)

• Name: Microbial Communities From Sediments And Microbial Mats In Various Locations
• Type: Environmental
• Taxonomy: Environmental → Aquatic → Freshwater → River → Unclassified → Freshwater Microbial Mat → Microbial Communities From Sediments And Microbial Mats In Various Locations

Alternative Ecosystem Assignments

• Environment Ontology (ENVO): freshwater river biome → river → microbial mat material
• Earth Microbiome Project Ontology (EMPO): Free-living → Non-saline → Water (non-saline)

Location Information

• Location: USA: Delaware
• Coordinates
  • Lat. (^o): 38.7906
  • Long. (^o): -75.1644
  • Alt. (m): N/A
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F024678	Metagenome / Metatranscriptome	205	Y
F027186	Metagenome / Metatranscriptome	195	Y
F073262	Metagenome	120	Y
F087227	Metagenome / Metatranscriptome	110	N

Associated Scaffolds

Scaffold	Taxonomy	Length
Ga0193963_1129120	Not Available	664
Ga0193963_1135267	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Saprospiria → Saprospirales → Saprospiraceae → unclassified Saprospiraceae → Saprospiraceae bacterium	644
Ga0193963_1148281	Not Available	608
Ga0193963_1181061	Not Available	537

Sequences

Scaffold ID	Protein ID	Family	Sequence
Ga0193963_1129120	Ga0193963_11291201	F073262	SASRALETEDNPAGHFVGAAQHHANNFLEGLRAPVGITTQLLAPQSATNTTGTNLNASLNRPKTMATLQDKCLMLVASLLAVCEVAAIADLPVHWSMVHATFKATEQAACHANTLDSAGSKTNKPAPVTSPPLAQDMGNGRFTASSTNNPTEGTSVFRIRPSCMPCHQKCLNCNRMFEVLVQGVGTASFEVQQMVLINDELELPQSSEEFRGHINGHQVFM
Ga0193963_1135267	Ga0193963_11352673	F024678	LFFIGMALSMLGIMVALHSQQHTILGVLILFSGITTIMGSLPSYD
Ga0193963_1148281	Ga0193963_11482811	F027186	MVTNSDFNFTNNETVILELPFSEHIEELRQRLFHIFWIIL
Ga0193963_1181061	Ga0193963_11810611	F087227	VRGGQTTVIFNAINVIPQKSDIYVSGKASSTSSSSASFDLLLVQDGY