3300019759: Microbial mat bacterial communities from the Broadkill River, Lewes, Delaware, United States - FB_4_MG

Overview

Basic Information

• IMG/M Taxon OID: 3300019759
• GOLD Reference (Study | Sequencing Project | Analysis Project): Gs0129088 | Gp0217627 | Ga0193961
• Sample Name: Microbial mat bacterial communities from the Broadkill River, Lewes, Delaware, United States - FB_4_MG
• Sequencing Status: Permanent Draft
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Published?: N
• Use Policy: Open

Dataset Contents

• Total Genome Size: 291638201
• Sequencing Scaffolds: 10
• Novel Protein Genes: 11
• Associated Families: 11

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Cyanobacteria/Melainabacteria group → Cyanobacteria	1
All Organisms → cellular organisms → Bacteria	1
Not Available	5
All Organisms → cellular organisms → Bacteria → PVC group → Planctomycetes → Phycisphaerae → unclassified Phycisphaerae → Phycisphaerae bacterium	1
All Organisms → cellular organisms → Eukaryota → Sar → Alveolata → Ciliophora → Intramacronucleata	1
All Organisms → cellular organisms → Eukaryota → Sar → Stramenopiles → Ochrophyta → Bacillariophyta → Coscinodiscophyceae → Thalassiosirophycidae → Thalassiosirales	1

Ecosystem and Geography

Ecosystem Assignment (GOLD)

• Name: Microbial Communities From Sediments And Microbial Mats In Various Locations
• Type: Environmental
• Taxonomy: Environmental → Aquatic → Freshwater → River → Unclassified → Freshwater Microbial Mat → Microbial Communities From Sediments And Microbial Mats In Various Locations

Alternative Ecosystem Assignments

• Environment Ontology (ENVO): freshwater river biome → river → microbial mat material
• Earth Microbiome Project Ontology (EMPO): Free-living → Non-saline → Water (non-saline)

Location Information

• Location: USA: Delaware
• Coordinates
  • Lat. (^o): 38.7906
  • Long. (^o): -75.1644
  • Alt. (m): N/A
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000898	Metagenome / Metatranscriptome	845	Y
F001488	Metagenome / Metatranscriptome	686	Y
F004023	Metagenome / Metatranscriptome	456	Y
F012917	Metagenome / Metatranscriptome	276	Y
F020094	Metagenome / Metatranscriptome	226	Y
F020880	Metagenome	221	Y
F040603	Metagenome / Metatranscriptome	161	N
F041203	Metagenome	160	Y
F061006	Metagenome / Metatranscriptome	132	Y
F073262	Metagenome	120	Y
F087210	Metagenome / Metatranscriptome	110	Y

Associated Scaffolds

Scaffold	Taxonomy	Length
Ga0193961_1053365	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Cyanobacteria/Melainabacteria group → Cyanobacteria	1028
Ga0193961_1087519	All Organisms → cellular organisms → Bacteria	748
Ga0193961_1111922	Not Available	642
Ga0193961_1115597	All Organisms → cellular organisms → Bacteria → PVC group → Planctomycetes → Phycisphaerae → unclassified Phycisphaerae → Phycisphaerae bacterium	630
Ga0193961_1125608	Not Available	600
Ga0193961_1134961	All Organisms → cellular organisms → Eukaryota → Sar → Alveolata → Ciliophora → Intramacronucleata	576
Ga0193961_1142077	Not Available	559
Ga0193961_1147546	Not Available	546
Ga0193961_1151314	All Organisms → cellular organisms → Eukaryota → Sar → Stramenopiles → Ochrophyta → Bacillariophyta → Coscinodiscophyceae → Thalassiosirophycidae → Thalassiosirales	538
Ga0193961_1165331	Not Available	511

Sequences

Scaffold ID	Protein ID	Family	Sequence
Ga0193961_1053365	Ga0193961_10533652	F001488	LFLQEHLNHILRQIKKQNVKEKINMARLELTLNFPKDFQIKTFNVKSEKKLSPLAKLILQSVQFKHFYYVRDDISYLLKSNPIERDFLLQALHSIVISLQNNLSINFFDMWIYEIYINKVSTHNKFMSQKFQHLEPSEYITIKLAYGSNVSQEKK
Ga0193961_1087519	Ga0193961_10875193	F012917	PLNDCGYYDKYSSFGEINQVWDKKKHLRRKRWSQE
Ga0193961_1111922	Ga0193961_11119221	F061006	PKDRANDIDNTLTWLRNRGVDEPKDEDSPFQKTQSIPLPDKRSPEQKAKDLDDVLSWVRNPKENEDNPNVPDFEKVDQMLPKKPGQTPEDRAKDIDNALTWVRNRGVDQPEFDDTKPFSPMKSIPIDKRTPEQKAKDVDAILNWQRNPKENESPETEPFRKIDQMLPKKPGQSPKDRANDIDNTLTWLRNRGVDEPKDEDSPFQKTQSIPLPDK
Ga0193961_1115597	Ga0193961_11155972	F040603	MMYYTKHKTLADTSETSLFTVPTGYVLWVNYIFIANHGNSTNNVSCWWEDGAGVDQLYFLDNNSLNSGAKEILGGQADAPIFVLHNGDVV
Ga0193961_1125608	Ga0193961_11256082	F000898	EGKQALITKGVWEEVTEEGVTQMVYINGTRAVVNIGKIVKTPGTYGPDGHEITPPVYYDGWAYDIMSTDTIDFGANEVYPGDSAAHSFFGWPRNAEVPPPAPPVDEEE
Ga0193961_1125924	Ga0193961_11259241	F087210	MRFLIAALAFASAETALAHTPDTGFLSNFGHQLTSLHHSPAAML
Ga0193961_1134961	Ga0193961_11349611	F004023	TVFFGLVLCCTHLSEITLTIAANIFHTFFDFKGKFYXXIFTDKQLNTDTMIRLAYGHYLIAFYMAYLGLIQGVDMHYDXKNETTFDGLDTEMVXXDEALSQELGHMADVLVIITIICWFLYGEPEALSYEIFMXGDIGIVTDVRFYGVAPHXYFRPFMAXLIACPYHRTGIFGLLFYFLVLFYQPALHGTT
Ga0193961_1142077	Ga0193961_11420772	F041203	LAAAGYAAARNNDLTHYFLRPHNQLPQGYLDHCRKFFKELSGKRQASSGKPQALIQKNLHKPGTRVKNRFNRKV
Ga0193961_1147546	Ga0193961_11475462	F020880	MIDKWIYNFFAALDKLCLMMDNIFKFMIGLKMNYYFTGLLIIMLVLLAFCGGPSV
Ga0193961_1151314	Ga0193961_11513142	F020094	FTNLYNLKVKMNYFMSYMSLSFFNHQKLISYVININLSSTNTLINLNDIKGNPKFFYSAGMFNLQKNQKTRQPKAIITILRALLSKSKIFKTKPVAVHFNNLFFNHQSYIFKKLKQKIFIKLVTSYKYGSHNGCRLKKKKRIKVRTRTRKL
Ga0193961_1165331	Ga0193961_11653311	F073262	LLAPQSATNTTGANLNASLNRPKALATLQDKCPMLVATLLAACKVATTAALPLHWSKVHATLKPAEWAACHARALDTAGSEIDKPAPLIPPPLAQDLGNGRFTASSAHNPTEGMSIFCIQPSCMPNSQELCNCNRTFEVLVQGVGMASFKAQQMVLIKDKLDLPQSSEEF