3300019752: Microbial mat bacterial communities from the Broadkill River, Lewes, Delaware, United States - FB_1_MG

Overview

Basic Information

• IMG/M Taxon OID: 3300019752
• GOLD Reference (Study | Sequencing Project | Analysis Project): Gs0129088 | Gp0217624 | Ga0193958
• Sample Name: Microbial mat bacterial communities from the Broadkill River, Lewes, Delaware, United States - FB_1_MG
• Sequencing Status: Permanent Draft
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Published?: N
• Use Policy: Open

Dataset Contents

• Total Genome Size: 241554440
• Sequencing Scaffolds: 18
• Novel Protein Genes: 24
• Associated Families: 22

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
All Organisms → Viruses → Predicted Viral	1
All Organisms → cellular organisms → Eukaryota → Sar → Alveolata → Ciliophora → Intramacronucleata → Oligohymenophorea → Scuticociliatia → Philasterida → Uronematidae → Uronema → Uronema marinum	1
Not Available	6
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → unclassified Bacteroidetes → Bacteroidetes bacterium	1
All Organisms → cellular organisms → Eukaryota → Sar → Stramenopiles → Ochrophyta → Bacillariophyta	3
All Organisms → cellular organisms → Eukaryota → Sar → Stramenopiles → Ochrophyta → Bacillariophyta → Bacillariophyceae → Bacillariophycidae → Naviculales → Naviculaceae → Fistulifera → Fistulifera solaris	1
All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Cellvibrionales → Halieaceae → Pseudohalioglobus → Pseudohalioglobus sediminis	1
All Organisms → cellular organisms → Eukaryota → Sar	2
All Organisms → cellular organisms → Bacteria	1
All Organisms → cellular organisms → Eukaryota → Sar → Stramenopiles → Ochrophyta → Bacillariophyta → Coscinodiscophyceae → Thalassiosirophycidae → Thalassiosirales → Thalassiosiraceae → Thalassiosira → Thalassiosira pseudonana	1

Ecosystem and Geography

Ecosystem Assignment (GOLD)

• Name: Microbial Communities From Sediments And Microbial Mats In Various Locations
• Type: Environmental
• Taxonomy: Environmental → Aquatic → Freshwater → River → Unclassified → Freshwater Microbial Mat → Microbial Communities From Sediments And Microbial Mats In Various Locations

Alternative Ecosystem Assignments

• Environment Ontology (ENVO): freshwater river biome → river → microbial mat material
• Earth Microbiome Project Ontology (EMPO): Free-living → Non-saline → Water (non-saline)

Location Information

• Location: USA: Delaware
• Coordinates
  • Lat. (^o): 38.7906
  • Long. (^o): -75.1644
  • Alt. (m): N/A
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000331	Metagenome / Metatranscriptome	1285	Y
F001488	Metagenome / Metatranscriptome	686	Y
F001506	Metagenome / Metatranscriptome	681	Y
F001926	Metagenome / Metatranscriptome	616	Y
F002682	Metagenome / Metatranscriptome	537	Y
F012678	Metagenome / Metatranscriptome	278	Y
F026012	Metagenome / Metatranscriptome	199	Y
F029111	Metagenome / Metatranscriptome	189	Y
F029114	Metagenome / Metatranscriptome	189	N
F040603	Metagenome / Metatranscriptome	161	N

Associated Scaffolds

Scaffold	Taxonomy	Length
Ga0193958_1010916	All Organisms → Viruses → Predicted Viral	2194
Ga0193958_1050155	All Organisms → cellular organisms → Eukaryota → Sar → Alveolata → Ciliophora → Intramacronucleata → Oligohymenophorea → Scuticociliatia → Philasterida → Uronematidae → Uronema → Uronema marinum	905
Ga0193958_1067785	Not Available	757
Ga0193958_1069114	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → unclassified Bacteroidetes → Bacteroidetes bacterium	748
Ga0193958_1069214	All Organisms → cellular organisms → Eukaryota → Sar → Stramenopiles → Ochrophyta → Bacillariophyta	748
Ga0193958_1079181	All Organisms → cellular organisms → Eukaryota → Sar → Stramenopiles → Ochrophyta → Bacillariophyta → Bacillariophyceae → Bacillariophycidae → Naviculales → Naviculaceae → Fistulifera → Fistulifera solaris	692
Ga0193958_1082013	Not Available	679
Ga0193958_1085274	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Cellvibrionales → Halieaceae → Pseudohalioglobus → Pseudohalioglobus sediminis	664
Ga0193958_1090216	All Organisms → cellular organisms → Eukaryota → Sar → Stramenopiles → Ochrophyta → Bacillariophyta	642
Ga0193958_1090680	Not Available	640

Sequences

Scaffold ID	Protein ID	Family	Sequence
Ga0193958_1010916	Ga0193958_10109162	F040603	MYYTKHKTLTNTSETTLFAVPNGYVLWINYVFIANHGGSTNNVSCWWENGAGVDQLYFLDNNSLNSGAKEILGGQADAPIFVLHNGDVVKAQTGSAGDVEIAFTFKLMNEPAAFPNFNGS
Ga0193958_1041469	Ga0193958_10414693	F026012	ISLQNNLSINFFDMWVYDIYINKVETHNKFMSQKSQNLESDEYITIKLAYGSSVSQEKK
Ga0193958_1050155	Ga0193958_10501551	F051950	MWGYISTEATYQLNFNVGFSTTRSDVLVHLSQXQYXXXFXFAFLXSFYYLFVTRIVRYRSLKMRPKIVTSFRPHGKXGDFLAATIPAIXCLNILSNSNFILRLLEXQNEASLFTVRVRARQXYXVYKFELKNFTDILTAPKNVGYNRXTVNTFGDLQVAEDYLYMLQLRSQNVXVKNYXSEVLQKAGEV
Ga0193958_1054237	Ga0193958_10542372	F076890	MVVNRTVTTLLMAALGPGLSACSTPGSEEYCRYSDEYSIREADPQSLALVLGVRRGLAMETPFVVVRSLSEHNRGAALKLHATAEPHPMPVSLDESRCAAVDWNTYTLTVDEEEWSAFWSDDRNAPFEIAIAFLDNNESLLVSKFGAAIVDTAASDYLVSCGCYWK
Ga0193958_1059308	Ga0193958_10593081	F088919	IELAMHVEEICLSANVVDLDPDQPPEDREQSAALEQTNGMRFCRSAFTLFNNHRLAVKTQGFMQHARDYTIDIGMLDPHPKRLFKIGWGYLLSCIALCAAAWFLGSISLAVCAGLTLILAIYRSHDRLVFYSQYGRVPLVVLFNRSPDRVTLASFTDVLVQHIKDAKTRYPAANEALSEELKAHRRLMQEGGISSKRYNIVKQRILSLHSNKGVGDK
Ga0193958_1067785	Ga0193958_10677852	F029111	SDDSRTVSRTGIDENTSKEPEENALVDILMTMSQIPDVNRELAEAGAMFAVFEALRRSGR
Ga0193958_1069114	Ga0193958_10691141	F048669	VLEAFEATTKISYTGDETITVSIDYAERQQGFLDAPWYYVPINIGWYVYNN
Ga0193958_1069214	Ga0193958_10692142	F001488	MARLELTLNFPKSFQIKTFNVKSEKKLSPLAKLILQSVQFKHFYYVRDDISYLLKSNPIERDFLLQALYSIVISLQNNLSINFFDMWVYEIYINKVSTQNKFMSQKSQNLEPGE
Ga0193958_1079181	Ga0193958_10791811	F075465	EKTQYNSEWKTCQQRNASLIKHRGQTFSLILGQCTQLLQDKLKQDADWTAVSTSYDPLEMYSLIEKTVLAQTEDQYPFATVYDQEVALYSFKQDSLTNAQWYERFNTRVDVAKAIGVTRQHKGLLEYVAQKLHTAAYETLTEPQKIAVREDAEERYISYVFLRQSGAQHGNLKMDLKDGFPTGDNKFPKTRQQTLHLLDMYTRTAVQRPSPSEGQSFAQQKQKARNGKNK
Ga0193958_1082013	Ga0193958_10820131	F074892	MAFMMKKYAVIALFGLLLSACSERGENVYRTWVGPDRSNMAIVTLRLGDDIRDVTIREPVLPRSEYGTILLVPGQYTLYEHDGASIGISIRPMLVNVEKARANGELILGHTYVLHAGKSKETGERALW
Ga0193958_1085274	Ga0193958_10852742	F090406	MKGERKTFWLIIALVGLASCSTTLTSVDEEGGNVYALPPTVVDQMLKDAMSTEISTGTLRRGSTPYPSYLGEVTWGSLDKDTITASARPAKGRKLDGTIVDGYVFEVSRKGTAPATGEPTVKRIFAKLQKDAELTGTGAAFVEFAD
Ga0193958_1088336	Ga0193958_10883361	F087029	VLFRLCLAFFLLIPSPVFAEEVPGEVTVNEGFEDSTYETGLTVSTGVIYCDEQDRYGTTGCSLGIGSSTLFVFSEDVYEVGFIVGAVNNSYTVKYYYSDNTDETIQKSGQD
Ga0193958_1089651	Ga0193958_10896511	F087278	PNVPDFEKVDQMLPKKPGQTPEDRAKDIDNALTWVRNRGVDQPEFESSSPFNPVKSISVDRRTPEQKAKDVDAIMNWQRNPKANEGPETEPFRKIDQMLPRKPGQSPKDRANDIDNTLTWLRNRGVDEVGDEEDSPFQKAESISIPDKRSPEQKARDLDDVLSWVRNPKENEDNPNVPDFEKVDQMLPKKPGQTPEDRAKDIDNALTWVRNRGV
Ga0193958_1090216	Ga0193958_10902161	F087278	QMLPKKPGQTPEDRAKDIDNALTWVRNRGVDQPEFDDTKPFSPMKSIPIDKRTPEQKAKDVDAILNWQRNPKENESPETEPFRKIDQMLPKKPGQSPKDRANDIDNTLTWLRNRGVDEPKDEDSPFKKTQSIPLPDKRSPEQKAKDLDDVLSWVRNPKENEDNPNVPDFEKVDQMLPKKPGQTPEDRAKDIDNALTWVRNRGVDQPEFDDTKP
Ga0193958_1090680	Ga0193958_10906801	F093732	MSRQGETIHKQLEEMLQDMPVQERLERTLARIEQYLAHADEVENLNHVNFINEIKYQLEDITNKEKS
Ga0193958_1097698	Ga0193958_10976981	F053227	TEFNLDKYQTCLELYNEPSMEDEENYVPYLFGAKYLWYGYKVDACDNLENIIKDEM
Ga0193958_1102559	Ga0193958_11025592	F001506	MNRILYESRCRCKEEISITPKRKLSARSEGKPFQYPNEMMSKTFQIKYDKKLSSLARFILNSFRNKYIYYAIDDILYLLKSNPIERENLLALLYSPILSLHNNLCINFFDIWIHEVYINETSKINKFLNNEYQNLEQFTYITIKFLYKT
Ga0193958_1106146	Ga0193958_11061461	F012678	MRSQHSLEEIAESYGLLEDIKKEYENGIHSVLRKSNPELFSNPHTIPKLKKISINRGLGL
Ga0193958_1113899	Ga0193958_11138992	F001926	VRDEDIPDINNPKTMKAVLEGDKLMKEVLNGGYNVHPVPPPNSEIKDRIMKRYETKRIKIEKLLTLGYTTSGDPXKIGTK
Ga0193958_1117172	Ga0193958_11171721	F095489	MVTNEATPVSKTRMNTPAQNDAVDWNLVAERRFEDIEELNDLVQGWDFEFHQLKSGRSPAELLQLGRPEFMLTRFYFEQPYHQRGCTAQDALTIGLIEEGIDEVTTPD
Ga0193958_1117661	Ga0193958_11176612	F026012	LKSNPIERDFLLQALYSTVISLQNNLSINFFDMWIYEIYINKVSSNNKFMNQKFQNLESGEYITIKLAYGNNVSQEKK
Ga0193958_1119053	Ga0193958_11190532	F029114	KEYKVDDLSDEHKLIYNKVMLINRQKNEIVSNANFEVEKLDILAKHYSDLLKEAVEGDDKKVEVVK
Ga0193958_1134899	Ga0193958_11348991	F002682	MGKQIGSDEKPVSFRNHVYKKSDSKGANPRPGFYTQDYRDNWDRIFGKKKEQNNER
Ga0193958_1136725	Ga0193958_11367251	F000331	LDMAKSADPSDIADFLNDAAWAVRSTYHTVLKASPGAAIFGRDMLFDVPFLADWNKVGDYRQRQTDRNTARENKSRVEWDYAVGDKVLLRKDGILLKAETLYEKEPWTVSQVHTNGTIRIQCGTKSERLNIRRVTPFFEEMEI