3300019065: Metatranscriptome of marine eukaryotic protist communities collected during Tara Oceans survey from station TARA_047 - TARA_N000000278 (ERX1782424-ERR1711901)

Overview

Basic Information

• IMG/M Taxon OID: 3300019065
• GOLD Reference (Study | Sequencing Project | Analysis Project): Gs0117946 | Gp0216820 | Ga0192831
• Sample Name: Metatranscriptome of marine eukaryotic protist communities collected during Tara Oceans survey from station TARA_047 - TARA_N000000278 (ERX1782424-ERR1711901)
• Sequencing Status: Permanent Draft
• Sequencing Center: Canada's Michael Smith Genome Sciences Centre
• Published?: N
• Use Policy: Open

Dataset Contents

• Total Genome Size: 9486389
• Sequencing Scaffolds: 10
• Novel Protein Genes: 11
• Associated Families: 9

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
Not Available	3
All Organisms → cellular organisms → Eukaryota → Sar	2
All Organisms → cellular organisms → Eukaryota → Sar → Alveolata → Ciliophora → Intramacronucleata → Spirotrichea → Oligotrichia → Strombidiidae → Strombidium → Strombidium inclinatum	3
All Organisms → cellular organisms → Eukaryota → Sar → Alveolata → Dinophyceae → Suessiales → Symbiodiniaceae → Symbiodinium	1
All Organisms → cellular organisms → Eukaryota → Sar → Alveolata → Ciliophora → Intramacronucleata → Spirotrichea → Stichotrichia → Urostylida → Pseudourostylidae → Pseudourostyla → Pseudourostyla cristata	1

Ecosystem and Geography

Ecosystem Assignment (GOLD)

• Name: Marine Viral And Eukaryotic Protist Communities Collected From Different Water Depths During Tara Oceans Survey
• Type: Environmental
• Taxonomy: Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Marine Viral And Eukaryotic Protist Communities Collected From Different Water Depths During Tara Oceans Survey

Alternative Ecosystem Assignments

• Environment Ontology (ENVO): marine biome → marine water body → sea water
• Earth Microbiome Project Ontology (EMPO): Free-living → Saline → Water (saline)

Location Information

• Location: Indian Ocean: TARA_047
• Coordinates
  • Lat. (^o): -2.0465
  • Long. (^o): 72.1568
  • Alt. (m): N/A
  • Depth (m): 5

Associated Families

Family	Category	Number of Sequences	3D Structure?
F001926	Metagenome / Metatranscriptome	616	Y
F005505	Metagenome / Metatranscriptome	398	Y
F019482	Metagenome / Metatranscriptome	229	Y
F023529	Metatranscriptome	209	Y
F064368	Metagenome / Metatranscriptome	128	Y
F093339	Metagenome / Metatranscriptome	106	Y
F099338	Metagenome / Metatranscriptome	103	N
F102468	Metagenome / Metatranscriptome	101	Y
F102472	Metatranscriptome	101	Y

Associated Scaffolds

Scaffold	Taxonomy	Length
Ga0192831_100107	Not Available	1327
Ga0192831_101630	Not Available	710
Ga0192831_102573	All Organisms → cellular organisms → Eukaryota → Sar	612
Ga0192831_103013	All Organisms → cellular organisms → Eukaryota → Sar	580
Ga0192831_103295	All Organisms → cellular organisms → Eukaryota → Sar → Alveolata → Ciliophora → Intramacronucleata → Spirotrichea → Oligotrichia → Strombidiidae → Strombidium → Strombidium inclinatum	561
Ga0192831_103362	All Organisms → cellular organisms → Eukaryota → Sar → Alveolata → Ciliophora → Intramacronucleata → Spirotrichea → Oligotrichia → Strombidiidae → Strombidium → Strombidium inclinatum	557
Ga0192831_103491	All Organisms → cellular organisms → Eukaryota → Sar → Alveolata → Ciliophora → Intramacronucleata → Spirotrichea → Oligotrichia → Strombidiidae → Strombidium → Strombidium inclinatum	550
Ga0192831_103780	All Organisms → cellular organisms → Eukaryota → Sar → Alveolata → Dinophyceae → Suessiales → Symbiodiniaceae → Symbiodinium	534
Ga0192831_104222	Not Available	513
Ga0192831_104225	All Organisms → cellular organisms → Eukaryota → Sar → Alveolata → Ciliophora → Intramacronucleata → Spirotrichea → Stichotrichia → Urostylida → Pseudourostylidae → Pseudourostyla → Pseudourostyla cristata	513

Sequences

Scaffold ID	Protein ID	Family	Sequence
Ga0192831_100107	Ga0192831_1001071	F023529	PIIDNGFKYKIKFEDNSGDLPDLTCNTNDLRSVYRLKQAAYVSRDEPDRVWFVDTKQGSAQPSYYAVAHADMTHPSAVTAGDTIYVGEQRCDVVSSDADSTAGLKGEGSAVETYHSSSVVCAQALSENAHSTSDAIVTHDPIEVLFEGATQSCTSTDRPALRFIHDLATTTSSNLCADATACATVLEYNGQNRLVRWANGDTIADVSTHELMDNNDIAVNDRVSIRTMNSHTYETRTVDYINLQGLGASTDNFFTVSQPFTAAHAEKRIFLNFKGTTSSAACSGRGLCDGSSAECQCFKGYTGQACQIQNALAA
Ga0192831_101630	Ga0192831_1016302	F064368	MISSDGSCYFANSGEISLSNKLVVFNKKDDKNFSFNQKKKQNIIDSKQSSY
Ga0192831_102573	Ga0192831_1025731	F001926	VRHEDIPETNNPKIRFPVLEGDKLMKEVLNGGYNVHPVPPPNSEIKERIRKRYERKRIKIEKLFTLGYTTSGDP
Ga0192831_103013	Ga0192831_1030132	F093339	MTLSNTLFNNLTNKLKLETSLLQKEKFYAKNLLNQVTYLKKFKKNNSKDLSVREFFISNDKKTNLQDFIITYIISISFLKANTTIQISDIKGNLKLFYSAGSVQLSGKQKRKRRIAVSKLISLVLKKATFLGQKPIALH
Ga0192831_103295	Ga0192831_1032951	F019482	MYRAGSKLTNMMAFLKPSSCSFLAHSSDINDLLEGLDGVLEDWLDGLHDTESSLHIVDLWLHALDGLHLSGDLNEWLSIIKSLKDSSGKSLLDVLDGSSLGNGGVTISSGLGSLGRVEGGLEVDEELVFGHGVVLGGGNG
Ga0192831_103362	Ga0192831_1033621	F019482	MNHFREESDCNINHDGVASGGSSFLAHSSDINDLLEGLDGVLEDWLDGLHDTESSLHIVDLWLHALDGLHLSGDLNEWLSIIKSLKDSSGKSLLDVLDGSSLGNGGVTISSGLGSLGRVEGGLEVDEELVFGHGVVLGGGNG
Ga0192831_103491	Ga0192831_1034911	F019482	MNNYSLGWIRRRRSWCSFLSHSSDINDLLEGLDGVLEDWLDGLHDTESSLHIVDLWLHALDGLHLSGDLNEWLSIIKSLKDSSGKSLLDVLDGSSLGNGGVTISSGLGSLGRVEGGLEVDEELVFGHGVVLGGGNG
Ga0192831_103780	Ga0192831_1037801	F102472	AAAAAATPSNGSANLRGAAGWGHGIFGETCCMCSMHHGFTTVLYAAADYSHLFGGHAANWWCQSQCEVKCHLRGGHMFGCYDEQHLLAFDAQYGHRSGYLILHDQHFGNIC
Ga0192831_104222	Ga0192831_1042221	F102468	DYTDSIVSDAAVGEDVNNERSWTKVNYCVKRPAIRSEIKRLNGQERQEIGLTIDDYEILEETEGEYVYVRNCPKDYKRVGNTMCVAVCPLGWPDLGNKCLKMGQLVFFPFVWQPGDAKVVPKTL
Ga0192831_104225	Ga0192831_1042251	F005505	LFFERXNIAELDEIRFYGIAPHXYFRPFMGILTICPTHYEGLFXFASYIITLSTLPLFYNFYNPINKYVPAIPMQNSLLQTSCFILFLMSLLCVASVLPCGRYYYEPEGGYVGNPXIKFSLQYAFIYMXXILHHLDILDHHIFQFSQTYIRKCSSYANRTLAXRKSSSSK
Ga0192831_104525	Ga0192831_1045251	F099338	LMDSNVTKGQMKNLITDKPAPITVKLAQTNGDKDNVFKLMDANVTKGQMKNLITDKPAPITVKLAQLEKSAF