3300018689: Eukaryotic communities of water from different depths collected during the Tara Oceans expedition - TARA_N000000852 (ERX1086441-ERR1007416)

Overview

Basic Information

• IMG/M Taxon OID: 3300018689
• GOLD Reference (Study | Sequencing Project | Analysis Project): Gs0117946 | Gp0126092 | Ga0194239
• Sample Name: Eukaryotic communities of water from different depths collected during the Tara Oceans expedition - TARA_N000000852 (ERX1086441-ERR1007416)
• Sequencing Status: Permanent Draft
• Sequencing Center: Genoscope
• Published?: N
• Use Policy: Open

Dataset Contents

• Total Genome Size: 57398084
• Sequencing Scaffolds: 14
• Novel Protein Genes: 22
• Associated Families: 18

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
All Organisms → Viruses → Predicted Viral	1
Not Available	5
All Organisms → cellular organisms → Eukaryota → Sar → Alveolata → Dinophyceae → Gonyaulacales	1
All Organisms → cellular organisms → Eukaryota → Sar → Alveolata → Dinophyceae → Gonyaulacales → Pyrocystaceae → Alexandrium → Alexandrium monilatum	1
All Organisms → cellular organisms → Eukaryota → Sar	4
All Organisms → cellular organisms → Eukaryota → Opisthokonta → Metazoa → Eumetazoa → Bilateria → Protostomia → Ecdysozoa → Panarthropoda → Arthropoda → Mandibulata → Pancrustacea → Crustacea → Multicrustacea → Hexanauplia → Copepoda → Neocopepoda	1
All Organisms → cellular organisms → Eukaryota → Sar → Alveolata → Dinophyceae → Oxyrrhinales → Oxyrrhinaceae → Oxyrrhis → Oxyrrhis marina	1

Ecosystem and Geography

Ecosystem Assignment (GOLD)

• Name: Marine Viral And Eukaryotic Protist Communities Collected From Different Water Depths During Tara Oceans Survey
• Type: Environmental
• Taxonomy: Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Marine Viral And Eukaryotic Protist Communities Collected From Different Water Depths During Tara Oceans Survey

Alternative Ecosystem Assignments

• Environment Ontology (ENVO): marine biome → marine water body → sea water
• Earth Microbiome Project Ontology (EMPO): Free-living → Saline → Water (saline)

Location Information

• Coordinates
  • Lat. (^o): N/A
  • Long. (^o): N/A
  • Alt. (m): N/A
  • Depth (m): N/A

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000023	Metagenome / Metatranscriptome	5736	Y
F000070	Metagenome / Metatranscriptome	2710	N
F000075	Metagenome / Metatranscriptome	2622	Y
F000351	Metagenome / Metatranscriptome	1248	Y
F003621	Metagenome / Metatranscriptome	476	Y
F008082	Metatranscriptome	339	Y
F014384	Metatranscriptome	263	Y
F026772	Metatranscriptome	196	N
F034476	Metatranscriptome	174	Y
F034477	Metagenome / Metatranscriptome	174	Y
F042154	Metatranscriptome	158	Y
F042743	Metagenome / Metatranscriptome	157	Y
F057861	Metatranscriptome	135	N
F065449	Metatranscriptome	127	Y
F067435	Metagenome / Metatranscriptome	125	Y
F068737	Metatranscriptome	124	N
F086568	Metatranscriptome	110	N
F090441	Metatranscriptome	108	N

Associated Scaffolds

Scaffold	Taxonomy	Length
Ga0194239_10000036	All Organisms → Viruses → Predicted Viral	1422
Ga0194239_10000294	Not Available	844
Ga0194239_10000547	All Organisms → cellular organisms → Eukaryota → Sar → Alveolata → Dinophyceae → Gonyaulacales	688
Ga0194239_10000568	Not Available	680
Ga0194239_10000869	Not Available	603
Ga0194239_10000918	All Organisms → cellular organisms → Eukaryota → Sar → Alveolata → Dinophyceae → Gonyaulacales → Pyrocystaceae → Alexandrium → Alexandrium monilatum	593
Ga0194239_10001087	All Organisms → cellular organisms → Eukaryota → Sar	564
Ga0194239_10001198	All Organisms → cellular organisms → Eukaryota → Sar	549
Ga0194239_10001291	All Organisms → cellular organisms → Eukaryota → Opisthokonta → Metazoa → Eumetazoa → Bilateria → Protostomia → Ecdysozoa → Panarthropoda → Arthropoda → Mandibulata → Pancrustacea → Crustacea → Multicrustacea → Hexanauplia → Copepoda → Neocopepoda	537
Ga0194239_10001320	Not Available	533
Ga0194239_10001340	All Organisms → cellular organisms → Eukaryota → Sar	530
Ga0194239_10001507	Not Available	513
Ga0194239_10001527	All Organisms → cellular organisms → Eukaryota → Sar	512
Ga0194239_10001645	All Organisms → cellular organisms → Eukaryota → Sar → Alveolata → Dinophyceae → Oxyrrhinales → Oxyrrhinaceae → Oxyrrhis → Oxyrrhis marina	501

Sequences

Scaffold ID	Protein ID	Family	Sequence
Ga0194239_10000036	Ga0194239_100000361	F042154	GAEMRGVFPVVFDYVVKYNIKDAMEHQGKAKMKFDGKTPAKKFEMSFAPKTGTPMDLIWNMDFSSGFKYDYDFKMNAVTMEKGNGEYKWVNNGQKFELMTKDTFIVTKQSPFHWMNTMVTGGREWTKMEHTRNIFFDKVNKAQMINKMKIEEHNILDGQTWYHIKYDNTAPKTAFLFTYLPYNMEHPWTYEGGREHTANGGFTLTHKITHGENVIQEAEWVFDVKANDGSKFEMEHLHKMTMTEESPFYGMVYWYTGRYGKNVERKMTVFFDKINKSILFVPKMKMDTTLAIDGEKISEFVFDNTQAKKHIKFFYSPDAYTKDYLYEEEWEYPGFSGIKCKIDFKRGGVSTYNYDGEYSWVNNANKFEVKSNEKANQEANGPYYGMDYWLVGTYWKSAVVTRTFTYEKKNRNFLLGKIHFESKVMADGERFYEAKLDTRATPYTMVWFHKPVRALYPTPRDLTGQDEMTVTAW
Ga0194239_10000294	Ga0194239_100002941	F090441	TLSFLDSLALGAPITRRVIIGCQFPDAASYRKNDSDMFRSHSET
Ga0194239_10000547	Ga0194239_100005471	F008082	GAKDAIESAKSTVQFAPMLAVLFIATRMRALQMTDNKGAPQGWVQDGMYLATWSIMIQFMMCLIMPFFLGHKYTPDTLDGEQKPGENDNVSNQYGAMAVTFVRYCALIALLGGVTTVTIGVFMMTPETANGRGAIPVIADGTLPVDLAPEPYGVNDMPGAKKAMKNVGETVGTGVNTVNEAGETVTAPVADVAAPVTGF
Ga0194239_10000568	Ga0194239_100005681	F065449	GKAEAEGELETAEKNLADDKKHLADLKHECMAKAEEFGTSQSERGDELAALQKAKTILEEKTGGAADRTYSFVQLKVETKSRTRSRDEEVKDRIFALVQGLAKKDGSKALSLLAQRVQAAALMGADPFAKVKGMIQEMIEKLVAEAEKEASHKAFCDKEMSETKAKRDDKQSDLDDLNTKIDKATTKIAKLTEEIATLQAEATAMRDEEAAAWAAAKADFESGIEG
Ga0194239_10000869	Ga0194239_100008691	F086568	PPTHFQTQMIKTTIAILFCVASAAASVDHRGLEVLVERDGEIEGKLVGEGNRYPGESCEPGEGQCAISSCNAETLTCEEAIAEETEDAYGDPEIEFEHPEPTNVQIVEDDRQLRSARHYARKYDRQVRRANKHAFRASKGGWGHSYRGQQHQLYKAAKHDAKAQYAANMYAAKTGGLGLYGRQLRSARHYARKYDRQVRR
Ga0194239_10000918	Ga0194239_100009181	F026772	CECINKNQKGPDCECINKEPVVLAKTEKKGPDCECINKNQKGPDCECINKAPVVLAAKKGPDCECINKNQKGPDCECINNNPASFVQLRADPAPEDQLAKEMTHDLEMNFNKIAPFGKEDTAKELQDHAAKTQDTLVDAVENAEVAEIKRAVFRALTRLRAATIKEFDTIARLETQAIDAYNDAHHYRAENPLSHLH
Ga0194239_10000955	Ga0194239_100009551	F000351	REALAYGVYLHACHRSELMIFTVLLGLAAAVDMHQKVTPVQKVIQLLQGMAEKGKKEKHEEQVQFAAYKQFCDDTTVEKQRAIKEATAKMEQLVAAIQKAEADAATLAKEIAQLDEDISVYEGDKKAATEVREMENADYLTTHKDYSESVDALERAIATMKKQDYDRAQLLQVNKLEIIPEHAKKVISAFLSQGE
Ga0194239_10001087	Ga0194239_100010871	F067435	GMQTGRAHTTQLSLMASALTSKAVDFSKITEQIDGMIDVLGKEQTDDDTQKAFCDEEFTKSAAEKKDTEDKLASLAASIEEMSATVATLKSEIETLTAEIKALDKAVAQATEQRKEEHAVFLQTQAEGSAAVQLIEAAKNKLNKFYNPTMYKAPERRELTEEERIAVANGAVDPREEEAVAGQGIAG
Ga0194239_10001194	Ga0194239_100011941	F000070	GNAKLDTKVDNVAWKEANDDLDAAIKTVRDMVSSLRLDVDARRRKVDEILATIRHDITAVETNLEESKAKITSDTDQAVNALNGRIDFTNKDLAATQESLHTTQNSLSDCFNEVAVVRSDLERNVADTEARLKNELRQKQAELRSAEASRRLGALDLRMSGVQGGLGEHKRDILKLREEVNGP
Ga0194239_10001198	Ga0194239_100011981	F034477	GTEEQSKRDQAAKVLFTAAKKYANPKLAAIASSMRLDAFTKVKAAIDEMIAALLKEKEDEIKHKDFCTDALNKNARAQELKARDISELEAKIADLTTNIDELTKAIATLESEIAEMNTQLKRAGEDRELENKDFQQTVSDQRETQALLQKALGVLEAVYAKKESFVQKKKEPAGPPPPPGFK
Ga0194239_10001225	Ga0194239_100012251	F042743	TGIREKEHSDFVESTGEQKADLDAMTGAIAALEKGMGGAFIQAHSGAASRVQRVVKTSANVDDFERNEIMSMLQGKNPFGDYGARSGEIVGILKAMKDEMDKDLGGAVWTEEEAAKAFEGMAAAKKAEIQAASEAIEGKTVRSGELAVETTTTADEIEDTTKEMSDTQAFIANLASMCET
Ga0194239_10001241	Ga0194239_100012411	F000023	GNNKGEINHVRRIVLACERDMEDFTAAMDAVNVDLDEMRARVDATHSIITSRQRVEATMTAEISTMRLDIGDIQEALKNHDSWMEDVSNTLQQMQEKEENLTEDLINLKNEMNAKLDTKVDNVAWKEANDDLDAAIKTVRDMVSSLRLDVDARRRKVDEILATIRHDITAVETNLEESKA
Ga0194239_10001291	Ga0194239_100012911	F068737	GGFGLFSVGGTGRSAEESVVTPADMTGGMCFMMFMSGAEEKLSCIERTACEDPYLATDYLTAAKMIYKGYKLVGMHIADKYATVMNSVNDALEYGKSGAECSAKYHW
Ga0194239_10001303	Ga0194239_100013031	F000023	GSGAQTDAQVLKKVSTRLQDFEAQITAQLSNMQSDFDKKLSHLNRGSSGVKGMDTTTSVAGIETVVEDLDALKYDVGELKDLLNNNKGEINHVRRIVLACERDMEDFTAAMDAVNVDLDEMRARVDATHSIITSRQRVEATMTAEISTMRLDIGDIQEALKTTTRGWRTCRTRSSRCA
Ga0194239_10001320	Ga0194239_100013201	F003621	TKIAKLKEEITTLQKELAAIAKLQKEATEMRAEEAAAWAAAKADFEAGIEGVQMALQVLRDYYAEKDAVLLQTEKASGAASGIIGMLEVVESDFTKMLAEGTAKETMAVDSYEKLTQDNKIATTEKSTAMKYKGKDQKETEAALAGLKEDREGTEKELASILEYWDKLQPMCVAKPE
Ga0194239_10001340	Ga0194239_100013401	F034476	ENNNFHAAKEDDVKAIGLLEEAIAAMSKYSENNAFLQKKHNKQPEMEVSPDQAPDAQFSSKGKHANAEKGIVSLLTQIKENLENEVGLAEKSEAKATEEYDAMKASADAQVEAYDKQLTDLAASIAATDAEIEADTQTKTDTEGEKTATTEYLASIKEQCDWIEGAFQKRVDARIK
Ga0194239_10001362	Ga0194239_100013621	F000351	LAQRVFFTQPKMKVAFFLGLVVATEVTPVQKVIQLLNGMAEKGKKEKHEEQVQFAAYKQFCDDTTTEKQRAIKEATAEMERLSASIQKAEADAATLAKEIAGLDEDISVWEGDKKAATEVRELENADYLTTHKDYSESVDALERAIAVLKKQAYDRKQGESLAQVAQLQLIPEHA
Ga0194239_10001386	Ga0194239_100013861	F000351	LAQRVFFTQPKMKVAFFLGLVVATEVTPVQKVIQLLNGMAEKGKKEKHEEQVQFAAYKQFCDDTTTEKQRAIKEATAEMERLSASIQKAEADAATLAKEIAGLDEDISVWEGDKKAATEVRELENADYLTTHKDYSESVDALERAIAVLKKQAYDRKQGESLAQVAQLQLIPEH
Ga0194239_10001507	Ga0194239_100015071	F042743	GGAIAALEKGMGKSFLQANSGAVSRLQRVVQASAVLTDDFERNQILDLLQGKNPFGDYSSQSGEIVGMLKAMKDEMDKDFKGAVSDEDEAQSAFEGMAAAKKEEIAAASEAIESKTARAGELAVSVVTTADDVEDTTKEMEETQAFLANLASSCATKKKEWAERTKIRTE
Ga0194239_10001527	Ga0194239_100015271	F014384	GWEERQKARQEEIQACSEALAILSSDDAHDTFTKTFNFVQTRTESRETKKRDQAAKVLFKAAKQYANPELAALATKVRLDAFTKVKAATDEMVSALLKEKEDEIKHKDFCTDGINKNERAQELKARDIDELVAKIEDLTAQIDGLEKSIATLNSEIAEMQTQLKRAGEDR
Ga0194239_10001550	Ga0194239_100015501	F000075	GIKTNLIKIQMKFAAALIATVAAVDFEYMNEDELLAQLSSNLSSAQRSEARGDADAAVAKTAAIKNIQKALTARILKRLDDGQPLVEVARKMKAIEGMQPQINDMERRLGIMQSVEPVLENAIKTLQKVVDVRGMGKK
Ga0194239_10001645	Ga0194239_100016451	F057861	GGAAKADFEQGLEGVRMALDVLRDYYASDDAFLQQPTGHTKATGASTGIIGMLEVIESDFSKMLAEGQATEDQAQKEYDTLTKDNEVATATKTTEAEYKTKDSKETAARLAGLQDDKGVAEKEYSAIMEYWEKLQPMCVAKPEPYAERKKRREAEIAGLKEALQIH