Sample 3300018564

Overview

Basic Information
IMG/M Taxon OID	3300018564 Open in IMG/M
GOLD Reference (Study \| Sequencing Project \| Analysis Project)	Gs0117946 \| Gp0217158 \| Ga0193513
Sample Name	Metatranscriptome of marine eukaryotic protist communities collected during Tara Oceans survey from station TARA_142 - TARA_N000003083 (ERX1789499-ERR1719165)
Sequencing Status	Permanent Draft
Sequencing Center	Canada's Michael Smith Genome Sciences Centre
Published?	N
Use Policy	Open

Dataset Contents
Total Genome Size	12259094
Sequencing Scaffolds	12
Novel Protein Genes	15
Associated Families	15

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
All Organisms → cellular organisms → Eukaryota → Sar → Stramenopiles → Ochrophyta → Pelagophyceae → Pelagomonadales → Pelagomonas → Pelagomonas calceolata	4
Not Available	5
All Organisms → cellular organisms → Eukaryota → Haptista → Haptophyta → Prymnesiophyceae → Isochrysidales → Noelaerhabdaceae → Emiliania → Emiliania huxleyi	1
All Organisms → cellular organisms → Eukaryota → Sar	1
All Organisms → cellular organisms → Eukaryota → Sar → Alveolata → Dinophyceae → Oxyrrhinales → Oxyrrhinaceae → Oxyrrhis → Oxyrrhis marina	1

Ecosystem and Geography

Ecosystem Assignment (GOLD)
Name	Marine Viral And Eukaryotic Protist Communities Collected From Different Water Depths During Tara Oceans Survey
Type	Environmental
Taxonomy	Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Marine Viral And Eukaryotic Protist Communities Collected From Different Water Depths During Tara Oceans Survey

Alternative Ecosystem Assignments
Environment Ontology (ENVO)	marine biome → marine water body → sea water
Earth Microbiome Project Ontology (EMPO)	Free-living → Saline → Water (saline)

Location Information
Location	Gulf of Mexico: TARA_142
Coordinates	Lat. (^o)	25.5264	Long. (^o)	-88.394	Alt. (m)	N/A	Depth (m)	5
Location on Map

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Family	Category	Number of Sequences	3D Structure?
F000023	Metagenome / Metatranscriptome	5736	Y
F000070	Metagenome / Metatranscriptome	2710	N
F005343	Metatranscriptome	403	Y
F011083	Metagenome / Metatranscriptome	295	N
F014384	Metatranscriptome	263	Y
F021310	Metatranscriptome	219	N
F022419	Metagenome / Metatranscriptome	214	N
F028816	Metatranscriptome	190	Y
F033072	Metagenome / Metatranscriptome	178	N
F041790	Metagenome / Metatranscriptome	159	N
F049399	Metagenome / Metatranscriptome	146	Y
F056636	Metagenome / Metatranscriptome	137	N
F068396	Metagenome / Metatranscriptome	124	Y
F068736	Metatranscriptome	124	N
F086568	Metatranscriptome	110	N

Family

Category

Number of Sequences

3D Structure?

F000023

Metagenome / Metatranscriptome

5736

F000070

Metagenome / Metatranscriptome

2710

F005343

Metatranscriptome

403

F011083

Metagenome / Metatranscriptome

295

F014384

Metatranscriptome

263

F021310

Metatranscriptome

219

F022419

Metagenome / Metatranscriptome

214

F028816

Metatranscriptome

190

F033072

Metagenome / Metatranscriptome

178

F041790

Metagenome / Metatranscriptome

159

F049399

Metagenome / Metatranscriptome

146

F056636

Metagenome / Metatranscriptome

137

F068396

Metagenome / Metatranscriptome

124

F068736

Metatranscriptome

124

F086568

Metatranscriptome

110

Scaffold	Taxonomy	Length	IMG/M Link
Ga0193513_1000612	All Organisms → cellular organisms → Eukaryota → Sar → Stramenopiles → Ochrophyta → Pelagophyceae → Pelagomonadales → Pelagomonas → Pelagomonas calceolata	829	Open in IMG/M
Ga0193513_1000782	All Organisms → cellular organisms → Eukaryota → Sar → Stramenopiles → Ochrophyta → Pelagophyceae → Pelagomonadales → Pelagomonas → Pelagomonas calceolata	755	Open in IMG/M
Ga0193513_1000960	Not Available	702	Open in IMG/M
Ga0193513_1001044	All Organisms → cellular organisms → Eukaryota → Sar → Stramenopiles → Ochrophyta → Pelagophyceae → Pelagomonadales → Pelagomonas → Pelagomonas calceolata	678	Open in IMG/M
Ga0193513_1001131	All Organisms → cellular organisms → Eukaryota → Sar → Stramenopiles → Ochrophyta → Pelagophyceae → Pelagomonadales → Pelagomonas → Pelagomonas calceolata	652	Open in IMG/M
Ga0193513_1001165	Not Available	644	Open in IMG/M
Ga0193513_1001174	Not Available	642	Open in IMG/M
Ga0193513_1001404	Not Available	594	Open in IMG/M
Ga0193513_1001512	All Organisms → cellular organisms → Eukaryota → Haptista → Haptophyta → Prymnesiophyceae → Isochrysidales → Noelaerhabdaceae → Emiliania → Emiliania huxleyi	577	Open in IMG/M
Ga0193513_1001726	All Organisms → cellular organisms → Eukaryota → Sar	541	Open in IMG/M
Ga0193513_1001858	All Organisms → cellular organisms → Eukaryota → Sar → Alveolata → Dinophyceae → Oxyrrhinales → Oxyrrhinaceae → Oxyrrhis → Oxyrrhis marina	523	Open in IMG/M
Ga0193513_1001923	Not Available	515	Open in IMG/M

Scaffold

Taxonomy

Length

IMG/M Link

Ga0193513_1000612

All Organisms → cellular organisms → Eukaryota → Sar → Stramenopiles → Ochrophyta → Pelagophyceae → Pelagomonadales → Pelagomonas → Pelagomonas calceolata

829

Open in IMG/M

Ga0193513_1000782

All Organisms → cellular organisms → Eukaryota → Sar → Stramenopiles → Ochrophyta → Pelagophyceae → Pelagomonadales → Pelagomonas → Pelagomonas calceolata

755

Open in IMG/M

Ga0193513_1000960

Not Available

702

Open in IMG/M

Ga0193513_1001044

All Organisms → cellular organisms → Eukaryota → Sar → Stramenopiles → Ochrophyta → Pelagophyceae → Pelagomonadales → Pelagomonas → Pelagomonas calceolata

678

Open in IMG/M

Ga0193513_1001131

All Organisms → cellular organisms → Eukaryota → Sar → Stramenopiles → Ochrophyta → Pelagophyceae → Pelagomonadales → Pelagomonas → Pelagomonas calceolata

652

Open in IMG/M

Ga0193513_1001165

Not Available

644

Open in IMG/M

Ga0193513_1001174

Not Available

642

Open in IMG/M

Ga0193513_1001404

Not Available

594

Open in IMG/M

Ga0193513_1001512

All Organisms → cellular organisms → Eukaryota → Haptista → Haptophyta → Prymnesiophyceae → Isochrysidales → Noelaerhabdaceae → Emiliania → Emiliania huxleyi

577

Open in IMG/M

Ga0193513_1001726

All Organisms → cellular organisms → Eukaryota → Sar

541

Open in IMG/M

Ga0193513_1001858

All Organisms → cellular organisms → Eukaryota → Sar → Alveolata → Dinophyceae → Oxyrrhinales → Oxyrrhinaceae → Oxyrrhis → Oxyrrhis marina

523

Open in IMG/M

Ga0193513_1001923

Not Available

515

Open in IMG/M

Scaffold ID	Protein ID	Family	Sequence
Ga0193513_1000612	Ga0193513_10006121	F041790	MPTAAPTAAGALSLCARDDGTKMAVVSGSLTFGATRDDDDEEGCLMRSGDDRFSSAYATAAPKTDATISARIMSEGSIRRDYGLLLRVTDDWDDSFRYQPRAGYRCTVNTGRDGKADSTLSVEVLREDGSRSTVASYAPAFALEPGTWYTVSASAVGNRITCQIMRGDWVLGSAEAVDDTYGDGYFATWNYKDDSGPHWWGDLRVVDAPPPAARRLRGSR
Ga0193513_1000782	Ga0193513_10007821	F021310	RILNESVKKRRTTKQATMNPSNNISMKDTRDGVVVKADGRMLLAKLVFAGSARLAECDLGIDELRAAFKKAHGEEASKGTLTYQLNEQDEDHLQLLDDADLALAKKHGSEPLKITSTEVDARNVFDHASAELAKHGLDAPSTELKKLLDVLQFKPRRLVKCGLAPPKALKCTAKGDEAEEPEDVLVVEALSIEDKEADATLDDAALAAKLQAEEYGTHDVVLEAVTGKGIKLDANTLHALLRMLHCRPARF
Ga0193513_1000870	Ga0193513_10008701	F000070	HDSWMEDVSNTLQQMQEKEENLTEDLINLKNEMNAKLDTKVDNVAWKEANDDLDAAIKTVRDMVSSLRLDVDARRRKVDEILATIRHDITAVETNLEESKAKITSDTDQAVNALNGRIDFTNKDLAATQESLHTTQNSLSDCFNEVAVVRSDLERNVADTEARLKNELRQKQAEAFEKIASVEQQAELRSAEASRRLGALDLRMSGVQGGLGEHKRDILKLREEVNGLTVKSASHEVELQ
Ga0193513_1000960	Ga0193513_10009601	F068396	RIMSKTANADKRKESLFRLVDTDDSGTIDAQEFAVLYDAIKKDLEEELEKQAALEKEASSATRRFKMLLLFVAVLVSFLAASVAANFAVIFTFVDSAITTSTSSTGLLEVKGSDTIIKTAIATQDVPLMVAPALDMDTLSEVKSLKVVYSTVLSERIEAQLTVVGVRKHNATFVEFVTSVPGETVEALNGVASLVRYPTNANQLTSPAKHTICSANATCSAFKARGIDVDAALD
Ga0193513_1001044	Ga0193513_10010441	F056636	QTAYFWLAIPCVMTMAPDPSALTYDAVTLTIGGLWVEVHMNYIYGHIAAWAPLENNQAPDKLGLLRAQQMFFVTAPLHTLAIFQGTQDSWKILFAAKDASRWASFDSINAITTAKLWVLTMMVMLSSSIVVGLVRIGTAKKPFDEIERWLGVVMSFVFLSLTAVPSAAMFFHKRVTSIKAKPSLMDRCTAGVFGKALVITPSLFYMFLYSAAIVVLLALRGRARN
Ga0193513_1001131	Ga0193513_10011311	F033072	GAWWRTLSRATYDATRIRTPHQRRSNKMKLVLALSVGASAFGGFGKSAAPAPSRGGQVAQGGQTVTNIQVPKIFTTAFGDPGRLQERAARAEAKKAEAEAQLIPTPARFAFAFGRPDILAERRAERLAKWQWSDEFLAKARPDQGNYGQGDVFDDGLTKLERLQIEQGREAYLTGGAKLRYKRLTGQI
Ga0193513_1001165	Ga0193513_10011652	F068736	VTFGLRNKEKNVVELERTLVGEEIGLDERVKVDLGTSLSYPDKMEIGLDEVNNIRQKLEKANLEVDLDKIAICIDLD
Ga0193513_1001174	Ga0193513_10011741	F005343	FFLAGCISAVLGYNLPHHDRATHFLSAMNSPDEEVMGPNMNFSEVSTTMKCIISLTIQYMVVYTALGICRSYLDFTKTAYADSQVQKALKSASETMFYAPMVCLMFVGFRMRVLQLTKGTGNPQDWVRMSMQAVTYSILANTLMVMLIPIVTAKEVKTDDEGMMDQEGANPFENSSLAIVFTVIRYVVFLGLYVGFGAVCVGVFLFKPPAGVW
Ga0193513_1001373	Ga0193513_10013731	F000023	QITAQLSNMQSDFDKKLSHLNRGSSGVKGMDTTTSVAGIETVVEDLDALKYDVGELKDLLNNNKGEINHVRRIVLACERDMEDFTAAMDAVNVDLDEMRARVDATHSIITSRQRVEATMTAEISTMRLDIGDIQEALKNHDSWMEDVSNTLQQMQEKEENLTEDLINLKNEMNAKLDTKVDNVAWKEANDDLDAAIKTV
Ga0193513_1001404	Ga0193513_10014041	F086568	HFQTQMIKTTIAILFCVASAAASVDHRGLEVLVERDGEIEGKIVGEGNRYPGESCEPGEGQCAISSCNAETLTCEEAIAEETEDAYGDPEIEFEHPEPTNVQIVEDDRQLRSARHYARKYDRQVRRANKHAFRASKGGWGHSYRGQQHQLYKAAKHDAKAQYAANMYAAKTGGLGLYGRQLRSARHYARKYDRQVRR
Ga0193513_1001512	Ga0193513_10015122	F049399	VLSFSAIPPEFKEFVQAKQRQLAFNMLSSSAAGVLVANVAALIAGDASVELLVQTSQLQI
Ga0193513_1001726	Ga0193513_10017261	F028816	EIKAGTDQKDTKTQELADTDELLAQSKQDLEDTRNSLAADQKFLMNLKETCQMTDQEFEERTKTRAEEIKAVSEALAILSSDDAHDTFTSTFNFIQKSSKKSSTREKAEKILLKAAKKTGDAKIAKLATRVQLDGFKKVSEDIDGMIADLKKEKAADVKMKDFCIEALHKNEVAIEMKA
Ga0193513_1001858	Ga0193513_10018581	F014384	KFLMNLKETCQMTDQEWEERQKSRAEEIKGVSEALAILTSDDAHDTFTRTFNFVQVRMRSRATRARDSASKMLFTAAKKYSNPRLAALATRVRLDAFTKVKAAIDEMIEALLKEKADEIKHKDFCTEGLNTNERETELKQRDIAELEAKISDLTTQIDELTKAIATLESEIAE
Ga0193513_1001923	Ga0193513_10019231	F011083	TDGIVASTSDIIAASRVEDALRALPNEVLEGVTVKARTSDTVSLCTRFHDGVQHLGGYSETTDGNFKNSKMSTNYCETTYTMATGSNKMDFTIEFADKPGQTGVQYLFEVDINKRGAGSFPVSGGITGTGAYSVAEMNFNVNLGNLSELAECSDRGLDDGDGQCECFDGFR
Ga0193513_1001929	Ga0193513_10019291	F022419	MSLRYAALLAPACAFTHSQQPRRIIVRRDYSSIDDVFDSVFDDAFDAWSPFGLSRRRDPWSPFGLSRRRSPLAQQFGQLKRLSQAFEEQLQRVDEDGFLADTPLGQRRQLETPKEDAPTKTDESTSSLYEAPATKDGEAPKEAVAPAAPRGYAYSW

Scaffold ID

Protein ID

Family

Sequence

Ga0193513_1000612

Ga0193513_10006121

F041790

MPTAAPTAAGALSLCARDDGTKMAVVSGSLTFGATRDDDDEEGCLMRSGDDRFSSAYATAAPKTDATISARIMSEGSIRRDYGLLLRVTDDWDDSFRYQPRAGYRCTVNTGRDGKADSTLSVEVLREDGSRSTVASYAPAFALEPGTWYTVSASAVGNRITCQIMRGDWVLGSAEAVDDTYGDGYFATWNYKDDSGPHWWGDLRVVDAPPPAARRLRGSR

Ga0193513_1000782

Ga0193513_10007821

F021310

RILNESVKKRRTTKQATMNPSNNISMKDTRDGVVVKADGRMLLAKLVFAGSARLAECDLGIDELRAAFKKAHGEEASKGTLTYQLNEQDEDHLQLLDDADLALAKKHGSEPLKITSTEVDARNVFDHASAELAKHGLDAPSTELKKLLDVLQFKPRRLVKCGLAPPKALKCTAKGDEAEEPEDVLVVEALSIEDKEADATLDDAALAAKLQAEEYGTHDVVLEAVTGKGIKLDANTLHALLRMLHCRPARF

Ga0193513_1000870

Ga0193513_10008701

F000070

HDSWMEDVSNTLQQMQEKEENLTEDLINLKNEMNAKLDTKVDNVAWKEANDDLDAAIKTVRDMVSSLRLDVDARRRKVDEILATIRHDITAVETNLEESKAKITSDTDQAVNALNGRIDFTNKDLAATQESLHTTQNSLSDCFNEVAVVRSDLERNVADTEARLKNELRQKQAEAFEKIASVEQQAELRSAEASRRLGALDLRMSGVQGGLGEHKRDILKLREEVNGLTVKSASHEVELQ

Ga0193513_1000960

Ga0193513_10009601

F068396

RIMSKTANADKRKESLFRLVDTDDSGTIDAQEFAVLYDAIKKDLEEELEKQAALEKEASSATRRFKMLLLFVAVLVSFLAASVAANFAVIFTFVDSAITTSTSSTGLLEVKGSDTIIKTAIATQDVPLMVAPALDMDTLSEVKSLKVVYSTVLSERIEAQLTVVGVRKHNATFVEFVTSVPGETVEALNGVASLVRYPTNANQLTSPAKHTICSANATCSAFKARGIDVDAALD

Ga0193513_1001044

Ga0193513_10010441

F056636

QTAYFWLAIPCVMTMAPDPSALTYDAVTLTIGGLWVEVHMNYIYGHIAAWAPLENNQAPDKLGLLRAQQMFFVTAPLHTLAIFQGTQDSWKILFAAKDASRWASFDSINAITTAKLWVLTMMVMLSSSIVVGLVRIGTAKKPFDEIERWLGVVMSFVFLSLTAVPSAAMFFHKRVTSIKAKPSLMDRCTAGVFGKALVITPSLFYMFLYSAAIVVLLALRGRARN

Ga0193513_1001131

Ga0193513_10011311

F033072

GAWWRTLSRATYDATRIRTPHQRRSNKMKLVLALSVGASAFGGFGKSAAPAPSRGGQVAQGGQTVTNIQVPKIFTTAFGDPGRLQERAARAEAKKAEAEAQLIPTPARFAFAFGRPDILAERRAERLAKWQWSDEFLAKARPDQGNYGQGDVFDDGLTKLERLQIEQGREAYLTGGAKLRYKRLTGQI

Ga0193513_1001165

Ga0193513_10011652

F068736

VTFGLRNKEKNVVELERTLVGEEIGLDERVKVDLGTSLSYPDKMEIGLDEVNNIRQKLEKANLEVDLDKIAICIDLD

Ga0193513_1001174

Ga0193513_10011741

F005343

FFLAGCISAVLGYNLPHHDRATHFLSAMNSPDEEVMGPNMNFSEVSTTMKCIISLTIQYMVVYTALGICRSYLDFTKTAYADSQVQKALKSASETMFYAPMVCLMFVGFRMRVLQLTKGTGNPQDWVRMSMQAVTYSILANTLMVMLIPIVTAKEVKTDDEGMMDQEGANPFENSSLAIVFTVIRYVVFLGLYVGFGAVCVGVFLFKPPAGVW

Ga0193513_1001373

Ga0193513_10013731

F000023

QITAQLSNMQSDFDKKLSHLNRGSSGVKGMDTTTSVAGIETVVEDLDALKYDVGELKDLLNNNKGEINHVRRIVLACERDMEDFTAAMDAVNVDLDEMRARVDATHSIITSRQRVEATMTAEISTMRLDIGDIQEALKNHDSWMEDVSNTLQQMQEKEENLTEDLINLKNEMNAKLDTKVDNVAWKEANDDLDAAIKTV

Ga0193513_1001404

Ga0193513_10014041

F086568

HFQTQMIKTTIAILFCVASAAASVDHRGLEVLVERDGEIEGKIVGEGNRYPGESCEPGEGQCAISSCNAETLTCEEAIAEETEDAYGDPEIEFEHPEPTNVQIVEDDRQLRSARHYARKYDRQVRRANKHAFRASKGGWGHSYRGQQHQLYKAAKHDAKAQYAANMYAAKTGGLGLYGRQLRSARHYARKYDRQVRR

Ga0193513_1001512

Ga0193513_10015122

F049399

VLSFSAIPPEFKEFVQAKQRQLAFNMLSSSAAGVLVANVAALIAGDASVELLVQTSQLQI

Ga0193513_1001726

Ga0193513_10017261

F028816

EIKAGTDQKDTKTQELADTDELLAQSKQDLEDTRNSLAADQKFLMNLKETCQMTDQEFEERTKTRAEEIKAVSEALAILSSDDAHDTFTSTFNFIQKSSKKSSTREKAEKILLKAAKKTGDAKIAKLATRVQLDGFKKVSEDIDGMIADLKKEKAADVKMKDFCIEALHKNEVAIEMKA

Ga0193513_1001858

Ga0193513_10018581

F014384

KFLMNLKETCQMTDQEWEERQKSRAEEIKGVSEALAILTSDDAHDTFTRTFNFVQVRMRSRATRARDSASKMLFTAAKKYSNPRLAALATRVRLDAFTKVKAAIDEMIEALLKEKADEIKHKDFCTEGLNTNERETELKQRDIAELEAKISDLTTQIDELTKAIATLESEIAE

Ga0193513_1001923

Ga0193513_10019231

F011083

TDGIVASTSDIIAASRVEDALRALPNEVLEGVTVKARTSDTVSLCTRFHDGVQHLGGYSETTDGNFKNSKMSTNYCETTYTMATGSNKMDFTIEFADKPGQTGVQYLFEVDINKRGAGSFPVSGGITGTGAYSVAEMNFNVNLGNLSELAECSDRGLDDGDGQCECFDGFR

Ga0193513_1001929

Ga0193513_10019291

F022419

MSLRYAALLAPACAFTHSQQPRRIIVRRDYSSIDDVFDSVFDDAFDAWSPFGLSRRRDPWSPFGLSRRRSPLAQQFGQLKRLSQAFEEQLQRVDEDGFLADTPLGQRRQLETPKEDAPTKTDESTSSLYEAPATKDGEAPKEAVAPAAPRGYAYSW

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

3300018564: Metatranscriptome of marine eukaryotic protist communities collected during Tara Oceans survey from station TARA_142 - TARA_N000003083 (ERX1789499-ERR1719165)

Overview

Ecosystem and Geography

Associated Families

Associated Scaffolds

Sequences