NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Sample 3300018549

3300018549: Metatranscriptome of marine microbial communities from Baltic Sea - GS675_0p8



Overview

Basic Information
IMG/M Taxon OID3300018549 Open in IMG/M
GOLD Reference
(Study | Sequencing Project | Analysis Project)
Gs0129055 | Gp0214160 | Ga0188832
Sample NameMetatranscriptome of marine microbial communities from Baltic Sea - GS675_0p8
Sequencing StatusPermanent Draft
Sequencing CenterJ. Craig Venter Institute (JCVI)
Published?N
Use PolicyOpen

Dataset Contents
Total Genome Size4713492
Sequencing Scaffolds4
Novel Protein Genes5
Associated Families5

Dataset Phylogeny
Taxonomy GroupsNumber of Scaffolds
All Organisms → cellular organisms → Eukaryota → Sar → Alveolata → Dinophyceae → Gonyaulacales → Lingulodiniaceae → Lingulodinium → Lingulodinium polyedra1
Not Available3

Ecosystem and Geography

Ecosystem Assignment (GOLD)
NameMetatranscriptome Of Marine Microbial Communities From Baltic Sea
TypeEnvironmental
TaxonomyEnvironmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater Lake → Metatranscriptome Of Marine Microbial Communities From Baltic Sea

Alternative Ecosystem Assignments
Environment Ontology (ENVO)marine biomemarine water bodysea water
Earth Microbiome Project Ontology (EMPO)Free-living → Saline → Water (saline)

Location Information
LocationBaltic Sea
CoordinatesLat. (o)62.09708Long. (o)18.5427Alt. (m)N/ADepth (m).3
Location on Map
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Associated Families

Associated Scaffolds

Sequences


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