3300017581: Metatranscriptome of marine eukaryotic communities from Atlantic Ocean in f/2 medium with seawater, 20 C, 28 psu salinity and 694 ?mol photons light - Amphidinium carterae CCMP 1314 (MMETSP0398) (SRX549006-SRR1294392)

Overview

Basic Information

• IMG/M Taxon OID: 3300017581
• GOLD Reference (Study | Sequencing Project | Analysis Project): Gs0128947 | Gp0212252 | Ga0187694
• Sample Name: Metatranscriptome of marine eukaryotic communities from Atlantic Ocean in f/2 medium with seawater, 20 C, 28 psu salinity and 694 ?mol photons light - Amphidinium carterae CCMP 1314 (MMETSP0398) (SRX549006-SRR1294392)
• Sequencing Status: Permanent Draft
• Sequencing Center: National Center for Genome Resources
• Published?: N
• Use Policy: Open

Dataset Contents

• Total Genome Size: 2152183
• Sequencing Scaffolds: 3
• Novel Protein Genes: 3
• Associated Families: 3

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
All Organisms → cellular organisms → Eukaryota → Sar → Alveolata → Dinophyceae	3

Ecosystem and Geography

Ecosystem Assignment (GOLD)

• Name: The Marine Microbial Eukaryote Meta/transcriptome Sequencing Project (mmetsp)
• Type: Host-Associated
• Taxonomy: Host-Associated → Human → Digestive System → Large Intestine → Fecal → Host-Associated → The Marine Microbial Eukaryote Meta/transcriptome Sequencing Project (mmetsp)

Alternative Ecosystem Assignments

• Environment Ontology (ENVO): marine biome → marine water body → sea water
• Earth Microbiome Project Ontology (EMPO): Free-living → Saline → Water (saline)

Location Information

• Location: Atlantic Ocean
• Coordinates
  • Lat. (^o): 41.56
  • Long. (^o): -70.583
  • Alt. (m): N/A
  • Depth (m): N/A

Associated Families

Family	Category	Number of Sequences	3D Structure?
F001767	Metagenome / Metatranscriptome	638	Y
F006064	Metatranscriptome	382	N
F043963	Metatranscriptome	155	Y

Associated Scaffolds

Scaffold	Taxonomy	Length
Ga0187694_10175	All Organisms → cellular organisms → Eukaryota → Sar → Alveolata → Dinophyceae	1219
Ga0187694_10246	All Organisms → cellular organisms → Eukaryota → Sar → Alveolata → Dinophyceae	1142
Ga0187694_10949	All Organisms → cellular organisms → Eukaryota → Sar → Alveolata → Dinophyceae	682

Sequences

Scaffold ID	Protein ID	Family	Sequence
Ga0187694_10175	Ga0187694_101751	F043963	ASKEPLLPNSKGSRARVSVFYGADEYLDELRKKFEHDHEIAAMKGLLPDEGDPNAGNVQSGDKMLTVQKNNENRSHKTGRLFPTPNKPDPMPPELAFLFTKISPEQMMYMWNILTLCFISQCLLILSYCAGLAFFPEHYWLCTMLFGVPFAYLAIQHIYVDHDVMHGATFPPYTWQKYLTHPFSDFISLPWEEFVLEHNRHHASTVDLLQQGEFGWDPEEFQYAMLEWTWRNKKYPFPIHPFGLVLSGAMLPWVHFFGLNDTGSLFAIEWYFHFPDEGPGGKVNKEFWKKWVPRRCIHTGFVMSLWACVWLLGTWPLGRPLSEGWRFVLPVTCAARCXXXXXXX
Ga0187694_10246	Ga0187694_102461	F001767	ASKEPLLPNSKGSRARVSVFYGADEYLDELRKKFEHDHEIAAMKGLLPDEGDPNAGNVQSGDKMLTVQKNNENRSHKTGRLFPTPNKPDPMPPELAFLFTKISPEQMMYMWNILTLCFISQCLLILSYCAGLAFFPEHYWLCTMLFGVPFAYLAIQHIYVDHDVMHGATFPPYTWQKYLTHPFSDFISLPWEEFVLEHNRHHASTVDLLQQGEFGWDPEEFQYAMLEWTWRNKKYPFPIHPFGLVLSGAMLPWVHFFGLNDTGSLFAIEWYFHFPDEGPGGKVNKEFWKKWVPRRCIHTGFVMSLWACVWLLGTWPLGRPLSEGWRFVLPVTCAARCXXXXVYFFDMFITNFTHSHPWNNFLANDPERTWPMLHETMSFV
Ga0187694_10949	Ga0187694_109491	F006064	AAARNMSLFCCDGALCAHSAKFRAATGPAPIVPDGSQVRGSQALPMLQDWDKLGAKEKEVVQEKLEGIVNAFARELIRGKVFMKLGRNGRLFYRLCTLDKQLTAFSMHIKGAIVEYPFANMQHISFGYDLTDFTHVPVSLPSDALAAVIVMDNRRMNLVFSSPMERDEFVTCMLVLKERHKRTEKA