Sample 3300017316

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Sample 3300017316

3300017316: Metatranscriptome of marine eukaryotic communities from Southern California in marine media K with soil extract, 18 C, 36 psu salinity and 359 ?mol photons light - Rhodomonas abbreviata Caron Lab Isolate Isolate (MMETSP1101)

Overview

Basic Information
IMG/M Taxon OID	3300017316 Open in IMG/M
GOLD Reference (Study \| Sequencing Project \| Analysis Project)	Gs0128947 \| Gp0211939 \| Ga0186227
Sample Name	Metatranscriptome of marine eukaryotic communities from Southern California in marine media K with soil extract, 18 C, 36 psu salinity and 359 ?mol photons light - Rhodomonas abbreviata Caron Lab Isolate Isolate (MMETSP1101)
Sequencing Status	Permanent Draft
Sequencing Center	National Center for Genome Resources
Published?	N
Use Policy	Open

Dataset Contents
Total Genome Size	38436432
Sequencing Scaffolds	21
Novel Protein Genes	21
Associated Families	13

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
All Organisms → cellular organisms → Eukaryota → Cryptophyceae → Pyrenomonadales → Geminigeraceae → Guillardia → Guillardia theta	2
All Organisms → cellular organisms → Eukaryota → Cryptophyceae	14
All Organisms → Viruses → Predicted Viral	1
All Organisms → cellular organisms → Eukaryota → Cryptophyceae → Pyrenomonadales → Geminigeraceae	1
All Organisms → cellular organisms → Eukaryota → Cryptophyceae → Pyrenomonadales → Geminigeraceae → Guillardia → Guillardia theta → Guillardia theta CCMP2712	3

Ecosystem and Geography

Ecosystem Assignment (GOLD)
Name	The Marine Microbial Eukaryote Meta/transcriptome Sequencing Project (mmetsp)
Type	Host-Associated
Taxonomy	Host-Associated → Human → Digestive System → Large Intestine → Fecal → Host-Associated → The Marine Microbial Eukaryote Meta/transcriptome Sequencing Project (mmetsp)

Alternative Ecosystem Assignments
Environment Ontology (ENVO)	marine biome → marine water body → sea water
Earth Microbiome Project Ontology (EMPO)	Free-living → Saline → Water (saline)

Location Information
Location	USA: Southern California
Coordinates	Lat. (^o)	N/A	Long. (^o)	N/A	Alt. (m)	N/A	Depth (m)	N/A
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F010032	Metagenome / Metatranscriptome	309	N
F011850	Metagenome / Metatranscriptome	286	Y
F019282	Metagenome / Metatranscriptome	230	Y
F025760	Metagenome / Metatranscriptome	200	Y
F026478	Metagenome / Metatranscriptome	197	Y
F026581	Metagenome / Metatranscriptome	197	Y
F032673	Metagenome / Metatranscriptome	179	Y
F054914	Metagenome / Metatranscriptome	139	N
F067806	Metagenome / Metatranscriptome	125	N
F084315	Metagenome / Metatranscriptome	112	N

Showing 1 to 10 of 13 entries

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Associated Scaffolds

Scaffold	Taxonomy	Length	IMG/M Link
Ga0186227_102596	All Organisms → cellular organisms → Eukaryota → Cryptophyceae → Pyrenomonadales → Geminigeraceae → Guillardia → Guillardia theta	2120	Open in IMG/M
Ga0186227_104923	All Organisms → cellular organisms → Eukaryota → Cryptophyceae → Pyrenomonadales → Geminigeraceae → Guillardia → Guillardia theta	1611	Open in IMG/M
Ga0186227_106828	All Organisms → cellular organisms → Eukaryota → Cryptophyceae	1383	Open in IMG/M
Ga0186227_107053	All Organisms → Viruses → Predicted Viral	1361	Open in IMG/M
Ga0186227_108617	All Organisms → cellular organisms → Eukaryota → Cryptophyceae	1220	Open in IMG/M
Ga0186227_110578	All Organisms → cellular organisms → Eukaryota → Cryptophyceae	1072	Open in IMG/M
Ga0186227_110706	All Organisms → cellular organisms → Eukaryota → Cryptophyceae → Pyrenomonadales → Geminigeraceae	1063	Open in IMG/M
Ga0186227_112309	All Organisms → cellular organisms → Eukaryota → Cryptophyceae → Pyrenomonadales → Geminigeraceae → Guillardia → Guillardia theta → Guillardia theta CCMP2712	964	Open in IMG/M
Ga0186227_114436	All Organisms → cellular organisms → Eukaryota → Cryptophyceae	851	Open in IMG/M
Ga0186227_115056	All Organisms → cellular organisms → Eukaryota → Cryptophyceae	820	Open in IMG/M

Showing 1 to 10 of 21 entries

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Sequences

Scaffold ID	Protein ID	Family	Sequence
Ga0186227_102596	Ga0186227_1025963	F096687	VQFANLYGKKAAALYTQAGDYQKTARFYYKKAEDTYYQANNWAAYDDWRRARDQWDYFYSRNR
Ga0186227_104923	Ga0186227_1049231	F096687	SAAVLVMHTILYGKKAAALYTQAGDYQKTARFYYKKAEDTYYQANNWAAYDDWRRARDQWDYFYSRNR
Ga0186227_106828	Ga0186227_1068281	F084315	RGNAMAIQYGSVPSSTSPVVEPTAKSSRRPVMLYGAVAATALSVLAVIACLAFVAPKQDVPAELLTQDLVLFKMEPPPEPWSPPANLWMYWGEAPNKRFGHSGDNLRHLVKLGRLAGGEYRDPHFLFNYDSQTFRDLSEACCTAMLVTPMKNNMPIWNANSNVAQRLRNYVANGNHMIFSGGSLVSIEFINRYFWYNIEPVSATGIFKGSGYGNYSPGPFKKLIDDDLPWQYKLTPDTLFQDYTSVSSMDLRSLPSGTTVLYMTPKSSPVFMIKFCQRISEKHGEPPIKTVPRDCWRHAARGFPCSCGTITYIGYDWHMDQTAADWDKVMLAAVEYQSDPDVSETFSPNCKQPPKVVVDPHAPIAPPICK
Ga0186227_107053	Ga0186227_1070531	F026581	MVAVYNTFGEVEAARPRDGFKKYAGALAGAWAVLFVAAVMIIGTADNNQESVLLQGAPTQMLAFKEFEPERNVFEEFDADFVPEKKFEYDLANEADFSKINIASGVEGSEVTEGIPDPYAVYHQLVVPEAVYTQPPPYDTTVVEIGEKIFGEPFHEYTAEEEGEAVMGKEYEDTIFDKTLNSVPEPNPSRDWEVLDVQNEPNPNY
Ga0186227_108617	Ga0186227_1086171	F010032	RKRVMVTMSLRALNTISATLALGLVALAGWHMQNPQHFELFQTASEISAPQQTTELSFLQTSAFVDQIYMYAGLGVDNKHETGFIAKEIRKHNYQTMVRLFTSLDDATFRAVLWDQAVHCLVWPPFVRYPGLSETAKTDLRAYAAAGNNVVFLGNYVAVQFMNDVFGFQLTDDYQNGPYYRNDRNCRNTPFQYLPSRVEQASIETYAVKTRSLPPGGKSMLDTLGATVAFVIRYDLGTVCYVGYNYNTPFHADQWTRVLHCAIDM
Ga0186227_110578	Ga0186227_1105781	F032673	MVLLADYGSLSQHVEFARQPRSRVSAMVSGVALLAALAIVGVVALNWDQDDGSVTLAALNKQEMDDILTKAKHMSTAQLRSEVAGLEMGKVAGSQSLVTVNENTAANPDGGVMENVPATVVAPVPGPPDFNGASAVVARLPNIGFAPSLLTEKGFETRGTFTVRKSRAGESFYLRVYGKLNHNIRCTLRGYRNLMGDFTGNTIYTGFKKIYTGKSQLHTQHIPRGIVGEFDIMTCRDLGNGEVQYFRIRYD
Ga0186227_110706	Ga0186227_1107061	F010032	HTSKRHATSSLAPPLAMLAPRVLNTITVSLALCLVALAGWHLHHPEHFELLGKSAAVQQTTELSFLQTSAFVDQIYMYAGLGVDNKHETGFIAKEIRKHNYQTMVRLFTSLDDATFRAVLWDQAVHCLVWPPFVRYPGLSETAKTDLRAYAAAGNNVVFLGNYVAVQFMNDVFGFQLTDDYQNGPYYRNDRNCRNTPFQYLPSRVEQASIETYAVKTRSLPPGGKSMLDTLGATVAFVIRYDLGTVCYVGYNYNTPFHADQWTRVLHCAIDM
Ga0186227_112309	Ga0186227_1123091	F096687	MRCAAACSFQQKKAAALYTQAGDYQKTARFYYKKAEDTYYQANNWASYDDWRRARDQWDYFYSRNR
Ga0186227_114436	Ga0186227_1144361	F032673	AEMVLIADYGSLPQSTQTSRSRSRAPVFVAGFAAVAALALVGFAAFADQDDGSVTLAALNQQEMQDLLSRASTMPTSQLRAEVAKLEASRTTSLVTVNDNTAANPDGAVMENVPATVVAPVPGPPDFNGASAVVARLPNIGFAPSLLTEKGFETRGTFTVRKSRAGESFYLRVYGKLNHNIRCTLRGYRNLMGDFTGNTVYTGFKKIYTGKSQLQTGHIPRGIVGEFDIMTCRDLGNGEVQYFRIRYD
Ga0186227_115056	Ga0186227_1150562	F025760	MLFILPRQFLRNDPYSMYDTEASGNWYKADEPWGAYLQTDGNPAVSIAPYESDPSSGSFNPQAHTTWVPVDWNSWPNYNVHGYGVY
Ga0186227_115564	Ga0186227_1155641	F011850	GAQTFLSSAIENVPFIDEVTGEAQGFTAPKNHFASVISLWVLFALPVWSAAYKQAGCDTPDWFGISQVNEDAPGVGLLAKAAPEYNGPSFREGLEYVFSFVWKPPILIAWKPRTDIEIAAMDPARDTVVSSLYKGFGGALDKTAVYDEEDQLLILSDIVTFEETELGRRREKIAEEAGWYTGNPSFGRSLIEYSEQTRKGKRDVGTVTISTEELAKLRAEAAKN
Ga0186227_116384	Ga0186227_1163841	F025760	LRRYDTKMGGNWYKADEPWGAYLQTEGNPAVTIHPYESDPSSGSFNPQAHTTWVPVDWSSWPNYNVHGYGVY
Ga0186227_117245	Ga0186227_1172451	F096687	MQFDQLYGKKAAALYTQAGDYQKTARFYYKKAEDTYYQANNWAAYDDWRRARDQWDYFYSRNR
Ga0186227_117246	Ga0186227_1172461	F101267	RQNMGCCSSRAPGSHEWQAEVPGSHKANPVPTVNRKQEIPADFFTKCFMRGYLKTLPKKQRIWCMIHENNFYFMDNPEDTEPRKFFCFDGCLVNLKGKELEIQTAELMGGSVPRATYKFTAEDDAKALEWYEASLKASSRRN
Ga0186227_117579	Ga0186227_1175791	F101269	VSNSTSTAMLENLFCIAAGKVGGGTLLAHCFPDHAAPESTQKVNGWGPFFANDSQGYIAYGTGNFDGQGSGHNFDGNVWHPSHGYVNNCDGARSHWSCDYRQA
Ga0186227_117728	Ga0186227_1177281	F067806	MASPAVQVEDLGLSYGSRINSFSVEPRSGWRVRTASAALLVATVALVTLLALSDGQPEVTRMSLSASEMNGGTGGMAHSNGDATDFIDTADLGDYVDAIIGPAPSGLTEGGYKKRGSIAVSKIDASGFYYLNIQGEPGHALKTILQGSDGYHRHWKGYGQIYTGPIHEGNYGGKDYLQIQDLVTGEVEYFRFRFT
Ga0186227_118688	Ga0186227_1186881	F019282	MFALLKMTMLDDVNTINTWAEPHNANGVTPNTIIDSNDEPPCNNQQRMTIRGY
Ga0186227_119534	Ga0186227_1195341	F026478	RSTPRIPLCAHLAPLILCSEQKPSKTMSKTALLVAVAVLLVVVIDSAKPKRKTVSVTDEDVVKARNFALAEIIKLSDSYRDMKINKVQSAETARSAFADGTNYFLKMELECTSLCAAPLSPASTCRRGHYKGVNEIIVFEKDDGHYDGIAIDEFPQMDGEYHPCTPSYKGPEKCNPAEHRTPEQAALFLDDDEEGRKDEL
Ga0186227_121697	Ga0186227_1216971	F025760	MLFILPSNFLRNDPYSMYDTQASGNWYKADEPWGAYLQTDGNPAVSIAPYESDPSSGSFNPQAHTTWVPVDWNSWPNYNVHGY
Ga0186227_121825	Ga0186227_1218251	F054914	PTSSCPTMQNNYGAAAVSSPAPVRRGAQLAFAFAIIAAALVCAVGIISYAKYTNALQPVSTLQFTKLGTEYQVASALMKHATDMQFDENSPVPENLADLAKAAEDEMKIDAEVMGTR
Ga0186227_124254	Ga0186227_1242541	F101269	VSNSTSTAMLENLFCIAAGKVGGGTLLAHCFPDHAAPESTQKVNGWGPFFANDSQGYIAYGTGNFDGQGSGHNFDGNVWHPSHGYVNNCIRQIEA

Showing 1 to 21 of 21 entries

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