3300017256: Metatranscriptome of marine eukaryotic communities from Pacific Ocean in f/2 medium with seawater, no Na2SiO3, 25 C, 34 psu salinity and 324 ?mol photons light - Symbiodinium sp. CCMP 2430 (MMETSP1115)

Overview

Basic Information

• IMG/M Taxon OID: 3300017256
• GOLD Reference (Study | Sequencing Project | Analysis Project): Gs0128947 | Gp0212025 | Ga0186313
• Sample Name: Metatranscriptome of marine eukaryotic communities from Pacific Ocean in f/2 medium with seawater, no Na2SiO3, 25 C, 34 psu salinity and 324 ?mol photons light - Symbiodinium sp. CCMP 2430 (MMETSP1115)
• Sequencing Status: Permanent Draft
• Sequencing Center: National Center for Genome Resources
• Published?: N
• Use Policy: Open

Dataset Contents

• Total Genome Size: 52918223
• Sequencing Scaffolds: 13
• Novel Protein Genes: 17
• Associated Families: 13

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
All Organisms → Viruses → Predicted Viral	1
All Organisms → cellular organisms → Eukaryota → Sar → Alveolata → Dinophyceae	2
All Organisms → cellular organisms → Eukaryota → Sar → Alveolata → Dinophyceae → Suessiales → Symbiodiniaceae → Symbiodinium	4
All Organisms → cellular organisms → Eukaryota → Sar → Alveolata → Dinophyceae → Suessiales → Symbiodiniaceae → Symbiodinium → Symbiodinium natans	1
All Organisms → cellular organisms → Eukaryota → Sar → Alveolata → Dinophyceae → Suessiales → Symbiodiniaceae → Symbiodinium → Symbiodinium microadriaticum	3
All Organisms → cellular organisms → Eukaryota → Sar → Alveolata → Dinophyceae → Suessiales → Symbiodiniaceae → Symbiodinium → unclassified Symbiodinium → Symbiodinium sp. CCMP2592	2

Ecosystem and Geography

Ecosystem Assignment (GOLD)

• Name: The Marine Microbial Eukaryote Meta/transcriptome Sequencing Project (mmetsp)
• Type: Host-Associated
• Taxonomy: Host-Associated → Human → Digestive System → Large Intestine → Fecal → Host-Associated → The Marine Microbial Eukaryote Meta/transcriptome Sequencing Project (mmetsp)

Alternative Ecosystem Assignments

• Environment Ontology (ENVO): marine biome → marine water body → sea water
• Earth Microbiome Project Ontology (EMPO): Free-living → Saline → Water (saline)

Location Information

• Location: Pacific Ocean
• Coordinates
  • Lat. (^o): -23.5
  • Long. (^o): 152.0
  • Alt. (m): N/A
  • Depth (m): N/A

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000085	Metagenome / Metatranscriptome	2467	Y
F000241	Metagenome / Metatranscriptome	1481	Y
F002609	Metagenome / Metatranscriptome	543	Y
F004725	Metagenome / Metatranscriptome	426	Y
F021306	Metagenome / Metatranscriptome	219	Y
F022654	Metatranscriptome	213	Y
F030772	Metagenome / Metatranscriptome	184	Y
F036711	Metagenome / Metatranscriptome	169	Y
F043414	Metagenome / Metatranscriptome	156	Y
F054571	Metagenome / Metatranscriptome	139	Y
F057101	Metagenome / Metatranscriptome	136	Y
F064392	Metatranscriptome	128	Y
F082123	Metagenome / Metatranscriptome	113	Y

Associated Scaffolds

Scaffold	Taxonomy	Length
Ga0186313_108276	All Organisms → Viruses → Predicted Viral	1639
Ga0186313_110117	All Organisms → cellular organisms → Eukaryota → Sar → Alveolata → Dinophyceae	1498
Ga0186313_110142	All Organisms → cellular organisms → Eukaryota → Sar → Alveolata → Dinophyceae → Suessiales → Symbiodiniaceae → Symbiodinium	1496
Ga0186313_110273	All Organisms → cellular organisms → Eukaryota → Sar → Alveolata → Dinophyceae → Suessiales → Symbiodiniaceae → Symbiodinium	1486
Ga0186313_121230	All Organisms → cellular organisms → Eukaryota → Sar → Alveolata → Dinophyceae → Suessiales → Symbiodiniaceae → Symbiodinium	912
Ga0186313_123895	All Organisms → cellular organisms → Eukaryota → Sar → Alveolata → Dinophyceae → Suessiales → Symbiodiniaceae → Symbiodinium	814
Ga0186313_130151	All Organisms → cellular organisms → Eukaryota → Sar → Alveolata → Dinophyceae → Suessiales → Symbiodiniaceae → Symbiodinium → Symbiodinium natans	610
Ga0186313_130982	All Organisms → cellular organisms → Eukaryota → Sar → Alveolata → Dinophyceae → Suessiales → Symbiodiniaceae → Symbiodinium → Symbiodinium microadriaticum	585
Ga0186313_130989	All Organisms → cellular organisms → Eukaryota → Sar → Alveolata → Dinophyceae → Suessiales → Symbiodiniaceae → Symbiodinium → Symbiodinium microadriaticum	585
Ga0186313_131016	All Organisms → cellular organisms → Eukaryota → Sar → Alveolata → Dinophyceae → Suessiales → Symbiodiniaceae → Symbiodinium → unclassified Symbiodinium → Symbiodinium sp. CCMP2592	584
Ga0186313_131275	All Organisms → cellular organisms → Eukaryota → Sar → Alveolata → Dinophyceae → Suessiales → Symbiodiniaceae → Symbiodinium → Symbiodinium microadriaticum	576
Ga0186313_132474	All Organisms → cellular organisms → Eukaryota → Sar → Alveolata → Dinophyceae → Suessiales → Symbiodiniaceae → Symbiodinium → unclassified Symbiodinium → Symbiodinium sp. CCMP2592	543
Ga0186313_132832	All Organisms → cellular organisms → Eukaryota → Sar → Alveolata → Dinophyceae	534

Sequences

Scaffold ID	Protein ID	Family	Sequence
Ga0186313_108276	Ga0186313_1082761	F043414	DCFNSEPATRDLAAMAKAMKVSKRPAAMKKVSMKKVKSKVAMSKTPAPAGLGNFKIRIGIIHGKVFDPIKVGTHDRNYPEHLKIKNNTGPNADGWGGQFMADVSTGLKIVRLHPDIFHVDFMTMEQVTEKRLSRNHLTFNFWGDMSIALMNEKPKLAKRLQKIQMNPNFRHHPVWDYYEWILHKSRYMKACERAGIPMIDTIHLEKGFNARDVLKKIVAKGWDKFFVKPAYMSFFGAGVINGKTQDFIDNIEPLLQYEAENKHQKEFLVQPYMLKPNGEVFDEIRNFFCDGEWAYSVYTDGVDYEGFWEQPKGKLKEACKKLAIQTMEEVKKVHKWEGKRINSLLNRIDIGIIPDKSRKLGYRIFVNEIEPQMTTWLGRYCPFVIQDRMAEVCVKQAHEMLKRSLAAKRKMPSPQKVRQLLDVLEQRLKES
Ga0186313_110117	Ga0186313_1101171	F082123	GHSARSTVVWALCNMVVPETHPIHHAVDPHFTHMLDVLESDTAKPFIIPILGLIAGIVMMNLPKCMEMAHGATVGTVGKLVLYFGAQSFMNIFMGWVFRTNVTLPKGYELPSGKVLEEDLHGCPVGFALTAMQQFISFFCFILLYFALYYTPYRIEPKVLIEDFGNITKKECWSIISVCIFGSVFALNIALNNFSLGYISIAVNLIIRSCLPLTTFLSQQGLAMFGLYPLKPWKFCEIFLMTLGVFCACIFTMAKIMGAGSHGKSSSNMILGVIICVLSLLCGSLNLALAGVLGEMKLNVYDTVAYMSIPAFLFLLPFAMFLDKPVPGEWPQVFGVDHATDWQILRQVAVIAPKTFALFALSGVFSFMYNIVQFSIVHTLSPSATAFGGNFNKAALVFLTLILPFLQVHALPGSPYIEVIWAAVIGNVCAFSAYSYLQILEKEKAKTAVNPEEKVGFTSDKEVEDWSSGSDSSEDESAAV
Ga0186313_110142	Ga0186313_1101421	F064392	LGQRAFECRRMAEPDDPLVINVVGRHKERENQDLQGEYHMIGMVHGRPAYRKPGTRTVIRYWPVADRWLIDREGVQESDICNAYAEQGGARHPAVEELVWRVWESQHRQHVRDPEFLVTAAPNTIQVLGRAAGKENWALNGEYKLIGLHQGKVAYQKAGKFKHAIRYWRVGDRWLIDLEGLRDVDICNAYADAQSTSYPGEIRLQWHIWDSTRQRHTLDSSLCTLVTPSVIEVVGRESPKENTAMNGSYHLVGLHAGQPAYMKTDGSGHAIRYWPREERWLIDLDGLRDTEICNAYAEAGGTGAHMHPGHLNLVWHVWETSRGRHLTDPAVRSFVAPHFVRISGRDPYKENSTINGDYELVKIVEGKPAYKKADADHVIRFWPAEERWIIDLEAGFHGGDVANSFADAKGAENPGNSELLWYVWETSRGRHVPDEDVIADAVWLPPVDWSKVPGVSD
Ga0186313_110273	Ga0186313_1102732	F002609	MHGVTFPVYEFQKFITHPFSDFISLPWEEFVLEHARHHASTVDLLIQGEFGWDPEEFHYALQQWAGPMGPNWYKYLLTVPWIPVIHFFGLNDTGFLFALEWWMSFPEADASGKCNKEFWTKWMPRRVKHNAVVLGLWACVWFLGTWPLGRPLSEGWRFVLPVTCAARVGFSLAWMFITNFTHSLPWNKFLENDPARTWPKLHNIMALAVGGKHRWNEMLFHDVHHCFPNAMGALSQRGRFHGWKKVHDACVEVLARGLWKPNGDEETEMMKSQKKRSALMKQGMAS
Ga0186313_121230	Ga0186313_1212301	F002609	EEFHYALQQWAGPWGSNWYKYLLTVPFIPVIHFFGLNDTGSLFALEWWMHFPDEGAGGKCNKEFWSKWVPRRIKHNAFVLALWTCVWMLGTYPLGRPLSEGWRFMFTVSFFARVGYSAAWMFITNFTHSLPWNEFLAQDPGRTWPVLHNVMAMVLGGKHRWNEMLFHDVHHAFPNAVGTLSQRGRFHGWEKVHDAAAEVLHRGLWKPNGDEETQMQKTQKKRSLMMKQGK
Ga0186313_123895	Ga0186313_1238951	F022654	ARWPSLAMRLWQLIVLTGPQVTWSDLAEELDTAETCPSCLAKGGGWCTASQRCVEDDTAYCEVESLIGLAGYTDDCGMDEEGQKPRVRPWIDKGVLVSYTFENGSCCMGQGIVSRAYHVLEEYTVLLRDGSKEEVKTDRWNRRKPAKKKDENSEYHNIEFRYFSPRELTVLSGLRPGDLVEAHFAVKKKGAAEDELIKSRRTELAVVINTTVPTVAVNYTTDHIVSVLPRDFVVDTTNATLGPGQSRHTEL
Ga0186313_124196	Ga0186313_1241961	F000241	MARPTLLPAVAVLAGVYSLASFCFVGSPQTPRDCSRVPARVSAEYLERCGPKDSDVPFNAGAASGAGATVEFKKRPFGILRYQPGEGMKGAMAMEIIPKSRYPGDPQGQAFASGVQSGWVVQSINGMNVQNEDFGKIMDMLDDEVADPRFSKSTALALDKQGGRMAEPVEAPLSVVFSSIPGYVYKGAQLTEDGQDGFAR
Ga0186313_127942	Ga0186313_1279421	F000085	LKCGSALAPVDRRAAPMAWSARLLGLASWSLAMADWPGCQENNMVIRNAGRALFTNLQGFGATVGCFQDDCQNTDKFVASSIESCTKVCQSLPECEFWVWGQEEGEQKCWFRLGDDGREAGEGWISGGRACHPPGQQAIVMGNVECWIDGFNYDTCCDPKFGPSGNAQCWDGVFNYDRCCFPKDEL
Ga0186313_129608	Ga0186313_1296081	F000085	RSSAPVHRQTFGTTGYSAGVMLRSLPRLMYIGIVAAQNWPGCQEQNTVIRNAGQALFTNLQGYGATIGCFLDDCMSSDKFVASEIESCAKVCFSLPDCKFWVWGTEEGEQKCWFRTGEAGREAGEGWVSGSKACAPPGTTVMPLGNSECWAEGFGYENCCEAKFGPNGNAQCWDGVYNYDRCCFPKEEL
Ga0186313_130151	Ga0186313_1301511	F036711	DCLAFTSSGAMPVWQNVNLKQKAIFEIIQREETGDLPYYLNDEELDFFVRGLACGPHAKTYLPQLVERDKRPIYIARGYAPPTYSRVVKLRFYGPDPLMKDAGSSWPAGHEGELLEYIVGWRWLYAYWDGPLVDEVDEAWNTKQWPDIARSDWTWEGLRFVTPPYWVPEDGRPWRKARNEEVPIRVTKGKGRGKGAKGPAGNA
Ga0186313_130976	Ga0186313_1309761	F057101	SPTGLLTVQIGKMECGQFVGKIKPDKDVERLARKFKLDDPVTSRLTELKVWRKRNGEEDRATKDLERIEFHLRFAKRPNALCTLLVGKLLECEMDELPDLVKAEKIMTDFKLDEDACSKMREIIEKRHEDEDRVIASVRKHLNSASNASSMLCKIARQLIDGQDLPDPPERPSKGKGGGKDSGKEDVERSERRDR
Ga0186313_130982	Ga0186313_1309821	F004725	MATSAPLLGKQGKAAHSKASIFYGADEYLEELKKKYEHDHEIAALKNALPGEGDPNAAGVAQSSDKMLSVQKNNENRSLKTNRLFPTPNKPDPMPQNLAFLFTKITPEQMIYMWNVLTAIFFTQVLMVIGYCAALACFPDFWWTCTLCFGIPFAYIAIQNIYIDHDVMHGATFPV
Ga0186313_130989	Ga0186313_1309891	F004725	MATSAPLLGKQGKAAHSKASIFYGADEYLEELKKKYEHDHEIAALKNALPGEGDPNAAGVAQSSDKMLSVQKNNENRSLKTNRLFPTPNKPDPMPQNLAFLFTKITPEQMIYMWNVLTAIFFTQVLMVIGYCGALACFPDYWWTCTLCFGIPFSYIAIQNIYIDHDVMHGATFPV
Ga0186313_131016	Ga0186313_1310161	F021306	MASMMGGMGDAMKEQAKKKIEDEMADKAPGSIKPFFPCCGGPVGTMEKCICMVPADQQEQVKSAIDTQ
Ga0186313_131275	Ga0186313_1312751	F004725	MATSAPLLGKEAKAAHSKASIFYGADEYLEELKRKYEHDHEIAALKNALPGEGDPNAAGVAQSSDKMLSVQKNNENRSLKTNRLFPTPNKPDPMPQNLAFLFTKITPEQMIYMWNVLTAIFFTQVLMVIGYCAALACFPDFWWTCTLCFGIPFAYIAIQNIYIDHDVMHGATFPV
Ga0186313_132474	Ga0186313_1324741	F030772	WQRFLTHPFADFLSLPWEEFVLEHNRHHASTVDLLIQGEFGWDPEEFHYALQQWAGPWGSNWYKYLLTVPFIPVIHFFGLNDTGSLFALEWWMHFPDEGAGGKCNKEFWSKWVPRRVKHNAFVLGLWTCVWLLGTYPLGRPLSEGWRFMFAVSFFARVGYSAAWMFITNFTHSLPWNEFL
Ga0186313_132832	Ga0186313_1328321	F054571	SHESAELPPTYRWPGPGSVHEVVWKTFRESVYRTEKDVLLELYSPYRPQHRTHLMVLELVAEALGNLSTLKVARMDTANNYVLPEFGLKDKEKASSFYFVAAAPEKHRRPRRLATKLGRPEELPAQLLRFVHRETRSQEWDFQDRSAWANQEAQRRIRRLRALEKDYEKKMQDEWVQ