NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Sample 3300017218

3300017218: Metatranscriptome of marine eukaryotic communities from Pacific Ocean in f/2 medium with seawater, no Na2SiO3, 25 C, 34 psu salinity and 712 ?mol photons light - Symbiodinium sp. CCMP 2430 (MMETSP1116)



Overview

Basic Information
IMG/M Taxon OID3300017218 Open in IMG/M
GOLD Reference
(Study | Sequencing Project | Analysis Project)
Gs0128947 | Gp0212021 | Ga0186309
Sample NameMetatranscriptome of marine eukaryotic communities from Pacific Ocean in f/2 medium with seawater, no Na2SiO3, 25 C, 34 psu salinity and 712 ?mol photons light - Symbiodinium sp. CCMP 2430 (MMETSP1116)
Sequencing StatusPermanent Draft
Sequencing CenterNational Center for Genome Resources
Published?N
Use PolicyOpen

Dataset Contents
Total Genome Size39004242
Sequencing Scaffolds18
Novel Protein Genes25
Associated Families22

Dataset Phylogeny
Taxonomy GroupsNumber of Scaffolds
All Organisms → Viruses → Predicted Viral1
All Organisms → cellular organisms → Eukaryota → Sar → Alveolata → Dinophyceae → Suessiales → Symbiodiniaceae → Symbiodinium8
All Organisms → cellular organisms → Eukaryota → Sar → Alveolata → Dinophyceae3
All Organisms → cellular organisms → Eukaryota → Sar → Alveolata → Ciliophora → Intramacronucleata → Spirotrichea → Choreotrichia → Choreotrichida → Strombidinopsidae → Strombidinopsis → Strombidinopsis acuminata1
All Organisms → cellular organisms → Eukaryota → Sar → Alveolata → Dinophyceae → Suessiales → Symbiodiniaceae → Symbiodinium → unclassified Symbiodinium → Symbiodinium sp. CCMP25922
All Organisms → cellular organisms → Eukaryota → Haptista → Haptophyta → Prymnesiophyceae → Isochrysidales → Noelaerhabdaceae → Emiliania → Emiliania huxleyi1
All Organisms → cellular organisms → Eukaryota → Sar → Alveolata → Dinophyceae → Suessiales → Symbiodiniaceae → Symbiodinium → Symbiodinium natans1
All Organisms → cellular organisms → Eukaryota → Sar → Alveolata → Dinophyceae → Suessiales → Symbiodiniaceae → Symbiodinium → Symbiodinium microadriaticum1

Ecosystem and Geography

Ecosystem Assignment (GOLD)
NameThe Marine Microbial Eukaryote Meta/transcriptome Sequencing Project (mmetsp)
TypeHost-Associated
TaxonomyHost-Associated → Human → Digestive System → Large Intestine → Fecal → Host-Associated → The Marine Microbial Eukaryote Meta/transcriptome Sequencing Project (mmetsp)

Alternative Ecosystem Assignments
Environment Ontology (ENVO)marine biomemarine water bodysea water
Earth Microbiome Project Ontology (EMPO)Free-living → Saline → Water (saline)

Location Information
LocationPacific Ocean
CoordinatesLat. (o)-23.5Long. (o)152.0Alt. (m)N/ADepth (m)N/A
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000076Metatranscriptome2620Y
F000085Metagenome / Metatranscriptome2467Y
F000241Metagenome / Metatranscriptome1481Y
F001154Metatranscriptome763Y
F004725Metagenome / Metatranscriptome426Y
F010767Metagenome / Metatranscriptome299Y
F018723Metagenome / Metatranscriptome233Y
F022654Metatranscriptome213Y
F028813Metatranscriptome190Y
F030772Metagenome / Metatranscriptome184Y
F036711Metagenome / Metatranscriptome169Y
F043414Metagenome / Metatranscriptome156Y
F057101Metagenome / Metatranscriptome136Y
F058692Metagenome / Metatranscriptome134N
F064392Metatranscriptome128Y
F074387Metagenome / Metatranscriptome119N
F074901Metatranscriptome119N
F085123Metatranscriptome111Y
F085734Metagenome / Metatranscriptome111Y
F088941Metatranscriptome109Y
F093247Metatranscriptome106Y
F098651Metagenome / Metatranscriptome103N

Associated Scaffolds

ScaffoldTaxonomyLengthIMG/M Link
Ga0186309_103877All Organisms → Viruses → Predicted Viral1650Open in IMG/M
Ga0186309_105019All Organisms → cellular organisms → Eukaryota → Sar → Alveolata → Dinophyceae → Suessiales → Symbiodiniaceae → Symbiodinium1530Open in IMG/M
Ga0186309_110527All Organisms → cellular organisms → Eukaryota → Sar → Alveolata → Dinophyceae1135Open in IMG/M
Ga0186309_113966All Organisms → cellular organisms → Eukaryota → Sar → Alveolata → Dinophyceae → Suessiales → Symbiodiniaceae → Symbiodinium972Open in IMG/M
Ga0186309_114385All Organisms → cellular organisms → Eukaryota → Sar → Alveolata → Dinophyceae954Open in IMG/M
Ga0186309_114978All Organisms → cellular organisms → Eukaryota → Sar → Alveolata → Dinophyceae → Suessiales → Symbiodiniaceae → Symbiodinium929Open in IMG/M
Ga0186309_115162All Organisms → cellular organisms → Eukaryota → Sar → Alveolata → Ciliophora → Intramacronucleata → Spirotrichea → Choreotrichia → Choreotrichida → Strombidinopsidae → Strombidinopsis → Strombidinopsis acuminata922Open in IMG/M
Ga0186309_115699All Organisms → cellular organisms → Eukaryota → Sar → Alveolata → Dinophyceae → Suessiales → Symbiodiniaceae → Symbiodinium901Open in IMG/M
Ga0186309_117631All Organisms → cellular organisms → Eukaryota → Sar → Alveolata → Dinophyceae → Suessiales → Symbiodiniaceae → Symbiodinium828Open in IMG/M
Ga0186309_120865All Organisms → cellular organisms → Eukaryota → Sar → Alveolata → Dinophyceae → Suessiales → Symbiodiniaceae → Symbiodinium → unclassified Symbiodinium → Symbiodinium sp. CCMP2592722Open in IMG/M
Ga0186309_123028All Organisms → cellular organisms → Eukaryota → Sar → Alveolata → Dinophyceae → Suessiales → Symbiodiniaceae → Symbiodinium650Open in IMG/M
Ga0186309_123371All Organisms → cellular organisms → Eukaryota → Haptista → Haptophyta → Prymnesiophyceae → Isochrysidales → Noelaerhabdaceae → Emiliania → Emiliania huxleyi639Open in IMG/M
Ga0186309_124061All Organisms → cellular organisms → Eukaryota → Sar → Alveolata → Dinophyceae617Open in IMG/M
Ga0186309_124102All Organisms → cellular organisms → Eukaryota → Sar → Alveolata → Dinophyceae → Suessiales → Symbiodiniaceae → Symbiodinium → Symbiodinium natans616Open in IMG/M
Ga0186309_124769All Organisms → cellular organisms → Eukaryota → Sar → Alveolata → Dinophyceae → Suessiales → Symbiodiniaceae → Symbiodinium597Open in IMG/M
Ga0186309_124787All Organisms → cellular organisms → Eukaryota → Sar → Alveolata → Dinophyceae → Suessiales → Symbiodiniaceae → Symbiodinium → Symbiodinium microadriaticum596Open in IMG/M
Ga0186309_125454All Organisms → cellular organisms → Eukaryota → Sar → Alveolata → Dinophyceae → Suessiales → Symbiodiniaceae → Symbiodinium → unclassified Symbiodinium → Symbiodinium sp. CCMP2592576Open in IMG/M
Ga0186309_127229All Organisms → cellular organisms → Eukaryota → Sar → Alveolata → Dinophyceae → Suessiales → Symbiodiniaceae → Symbiodinium525Open in IMG/M

Sequences

Scaffold IDProtein IDFamilySequence
Ga0186309_103877Ga0186309_1038771F043414DSYLEVEPATRDLAAMAKAMKVSKRPAAMKKVSMKKVKSKVAMSKTPAPAGLGNFKIRIGIIHGKVFDPIKVGTHDRNYPEHLKIKNNTGPNADGWGGQFMADVSTGLKIVRLHPDIFHVDFMTMEQVTEKRLSRNHLTFNFWGDMSIALMNEKPKLAKRLQKIQMNPNFRHHPVWDYYEWILHKSRYMKACERAGIPMIDTIHLEKGFNARDVLKKIVAKGWDKFFVKPAYMSFFGAGVINGKTQDFIDNIEPLLQYEAENKHQKEFLVQPYMLKPNGEVFDEIRNFFCDGEWAYSVYTDGVDYEGFWEQPKGKLKEACKKLAIQTMEEVKKVHKWEGKRINSLLNRIDIGIIPDKSRKLGYRIFVNEIEPQMTTWLGRYCPFVIQDRMAEVCVKQAHEMLKRSLAAKRKMPSPQKVRQLLDVLEQRLKES
Ga0186309_105019Ga0186309_1050191F064392SVQNGRGLGQRAFECRRMAEPDDPLVINVVGRHKERENQDLQGEYHMIGMVHGRPAYRKPGTRTVIRYWPVADRWLIDREGVQESDICNAYAEQGGARHPAVEELVWRVWESQHRQHVRDPEFLVTAAPNTIQVLGRAAGKENWALNGEYKLIGLHQGKVAYQKAGKFKHAIRYWRVGDRWLIDLEGLRDVDICNAYADAQSTSYPGEIRLQWHIWDSTRQRHTLDSSLCTLVTPSVIEVVGRESPKENTAMNGSYHLVGLHAGQPAYMKTDGSGHAIRYWPREERWLIDLDGLRDTEICNAYAEAGGTGAHMHPGHLNLVWHVWETSRGRHLTDPAVRSFVAPHFVRISGRDPYKENSTINGDYELVKIVEGKPAYKKADADHVIRFWPAEERWIIDLEAGFHGGDVANSFADAKGAENPGNSELLWYVWETSRGRHVPDEDVIADAVWLPPVDWSKVPGVSD
Ga0186309_110527Ga0186309_1105271F074901GSRFRLSRFTCLRKFGISDSGMATRAPLLGEKKQAHSKASIFYGADEYLEELKKKYAHDHEIAAMKNLLPGEGDPNAAGVAESKDKMLKVEKNNENRSLKTNRLFPTPNKPDPMPHNLAFLFTKITPEQMMYMWNVLTFIFLTQCAMIVAYCAALAMFPGMWWTCTLCFGIPFSYVAIQNIYIDHDVMHGATFPVYEFQKFLTHPFADFFSLPWEEFVLEHNRHHASTVDLLIQGEFGWDPEEFHYALQQWAGPWSSNWYKYLLTVPFIPVIHFFGLNDTGSLFALEWWMHFPDEGAGGKCNEEFWSKWIPRRIKHNAFVLSLWACIWLLGTYPLGRPLSEGWRFMFTVSFFARIGYSAAWMFITNFTHSLPWNEFLA
Ga0186309_113966Ga0186309_1139661F058692MSKPYSTFQGAYARQSQSAGISPRMDPESMSSFGFGKRKRLNVVSILINVLTPWLVFCGVFASMSFSTHHESPVLAWLAVVAGLAVAGGAGVMARRTKMQDQDPTWYTFAALALGLATVSAAVLGDMNYWYNMQPYYDIENINTYPSVNPAREKGQQLMDAGRVYFEDGTGLDTSKAMAFRNLDRYCVAPIVFGQEPLASYDFWAVGVNCCSGTTADFRCGEFDNPKARSGLRLMREDQRPFFRLAVQQAEAAYNIKANHPLFFYWMQDPVAEVLKYRSDGFKYALIAISTFFAFNILCVAGSVFAFSK
Ga0186309_114385Ga0186309_1143851F093247MNESAPPLLQGGGILGRFENVRVKKSAKKTVTCDAATPEYLRHDFLKPQHLPIERVDEEANFIATSNINETRFHKGFHRRHQADIQQDAARLEHEAARDWARQERAAAQASAAHHLRDKCTFNILTGEGVGRECEFRHVGKKILNPYGSMQATFSEHDREERHRVKNSKHRFFEHPAPEKQVRAANLFNEGLQTTVRESAVLGYGRGGVSRTRARSCGVADNFAHLQALPPEPEYEAPHNGNASQIILG
Ga0186309_114978Ga0186309_1149781F074387KTARRTGSGLPEAAARDMTDRFYPVGMEADAENWKTTYEVMNEMRSFARSPYPPGTAIHQPGSRDHFGYSAPGPIASRLTNSELALTEDTDIPNPREHMAITRIQEPDDRRVFEKHDVDEMLRTYNSPVAKATLSPSKPQSLAKTFSLPTIARRSEAPPKLSERNPVIKKLEDAHFSYFVPKNMQREHKDRLNTAQLSKLKKANMISFPFTGEGTGFRSQGSGANWWPSGSYAQVPTSYRLQFGRPGFFRDTSPLMQSKFPQQAVSAAQEDLQ
Ga0186309_115162Ga0186309_1151621F074901GSRFRLSRFTCLRKFGISDSGMATRAPLLGEKKQAHSKASIFYGADEYLEELKKKYAHDHEIAAMKNLLPGEGDPNAAGVAESKDKMLKVEKNNENRSLKTNRLFPTPNKPDPMPHNLAFLFTKITPEQMMYMWNVLTFIFLTQCAMIVAYCAALAMFPGMWWTCTLCFGIPFSYVAIQNIYIDHDVMHGATFPVYEFQKFLTHPFADFFSLPWEEFVLEHNRHHASTVDLLIQGEFGWDPEEFHYALQQWAGPWSSNWYKYLLTVPFIPVIHFFGLNDTGSLFALEWWMHFPDEGAGGKCNKEFWS
Ga0186309_115699Ga0186309_1156991F010767RLQRLSCRSCGARQPLICLTGGSAWQMAEPGGGSAEIDDSTSKLHEELSSVAPAGSPGCHCLEFDSWWNEGKHRRFVYIRYSITEGAFQMAIDEDSNLYHVPVAYGARTGEAVTVWDLHVGAEVDILGRMTTLQRCSQTTAEWNKYWADRLILLRNRLAEELKKYDTRKNDPWLTWQKARIEAGGADLRLLMGQVAGLCAQLNEYRPRLAAQLSVPQEMLIIEDLPRKHKESQEKAES
Ga0186309_117631Ga0186309_1176311F022654SKARWPSLAMRLWQLIVLTGPQVTWSDLAEELDTAETCPSCLAKGGGWCTASQRCVEDDTAYCEVESLIGLAGYTDDCGMDEEGQKPRVRPWIDKGVLVSYTFENGSCCMGQGIVSRAYHVLEEYTVLLRDGSKEEVKTDRWNRRKPAKKKDENSEYHNIEFRYFSPRELTVLSGLRPGDLVEAHFAVKKKGAAEDELIKSRRTELAVVINTTVPTVAVNYTTDHIVSVLPRDFVVDTTNATLGPGQSRHTEL
Ga0186309_118335Ga0186309_1183351F000241FGSSFLTPAASSCSRPAHFAMARPTLLPAVAVLAGVYSLASFCFVGSPQTPRDCSRVPARVSAEYLERCGPKDSDVPFNAGAASGAGATVEFKKRPFGILRYQPGEGMKGAMAMEIIPKSRYPGDPQGQAFASGVQSGWVVQSINGMNVQNEDFGKIMDMLDDEVADPRFSKSTALALDKQGGRMAEPVEAPLSVVFSSIPGYVYKGAQLTEDGQDGFAR
Ga0186309_120865Ga0186309_1208651F098651AQASCGRPPGHTARPAQGPGPGEMPAVRARASRKHLTEYQGWPKGIYPMSDGWVPPCYPKEEELIEYEEKMKARKKATLVKRHLCVKEPQLQRLSKRAFAQKSEYSMLAYAIAEGEYSGEGDDRSYFVIVFYEPAKKSKVERAFKSVGAALADYEQVVVDPDSKMEQEEKFMFAHGAGDPGECILGEYEYQVVPKGSPEYDDPWGPTHPEGKFWE
Ga0186309_120974Ga0186309_1209741F000076SNSQPSLAPAFPCWCTMAEEEGQEVIFTENTAPDREIWDEKGGLIKKGAAEIAERDQDHVPEVKVLTTLGMFAVPVTAETTIGEIRQKVQEWKPEYSLEQIELVCKDKDAWGPLFNKTSRPRDDDETVESLWSDWDIPRRMMQVALWIKEKNEETGEWESTFWKMLEESKCDDWSFQGHT
Ga0186309_121180Ga0186309_1211801F000085LRCCISRFRLCDSAQIQPRRAFRSSAPVHRQTFGTTGYSAGVMLRSLPRLMYIGIVAAQNWPGCQEQNTVIRNAGQALFTNLQGYGATIGCFLDDCMSSDKFVASEIESCAKVCFSLPDCKFWVWGTEEGEQKCWFRTGEAGREAGEGWVSGSKACAPPGTTVMPLGNSECWAEGFGYENCCEAKFGPNGNAQCWDGVYNYDRCCFPKEEL
Ga0186309_121278Ga0186309_1212781F085734RIVLACERDMEDFTAAMDAVNVDLDEMRARVDSTHSIITSRQRVEATVTAEISTMRLDMGDMQEALKAHDAWMEDVSQSLQEAHERCQQIGLDINDVNQQMQVKLDAKTDIVSWNDMNDDIDASIRTVRDMASSLRFEVDNRRRRVDEELARLRSEMTSMDERVMAKTGDIQRQADEKHAAVSGRLEEGAQHRRELQATLGRHAETHNLIQGQINGQRDELDTRLGFLESSMKKQ
Ga0186309_122111Ga0186309_1221111F000085WLKCGSALEPVDRRAAPMAWSARLLGLASWSLAMADWPGCQENNMVIRNAGRALFTNLQGFGATVGCFQDDCQNTDKFVASSIESCTKVCQSLPECEFWVWGQEEGEQKCWFRLGDDGREAGEGWISGGRACHPPGQQAIVMGNVECWIDGFNYDTCCDPKFGPSGNAQCWDGVFNYDRCCFPKDEL
Ga0186309_123028Ga0186309_1230281F036711NSLLARSLSWTCIQRWARYCGEMPVWQNINLKQKAIFEIIQKPHARDLPYYLTDDELDFFVKGIAWGPHRETYLPRLVERHKRPIYIARGYAPPTYSRLVMLRYYGPDPLLEGHTGWDAGEEGEIMQYVLGWRWLYADWPGPLVDEVEEAWKKSWWPEIAAPEWTWEGLRFCVPPYHLPEDGLPWREGRAAEYEPRVTKGKGKGRARALAAQEENR
Ga0186309_123371Ga0186309_1233711F028813EDDEQQDEAPQMKLKFSPDLVIQSEQFLKRWCPKRPEKAHTIPRVLPTVNEFLSIKKLPVDERWQMLALAGAGSFDPKLDSDPSNPVYTQWVHESMTQNKLACVTAGKEFTWGANVPASTVVVTKSFAETTSVAGMLQYVGRAARRGLTTHGQAIFERDEDLQRIFASPDGLSTEALTMERYAEWWLSRGKVW
Ga0186309_124061Ga0186309_1240611F018723RPLRRAREVHGAMTAEKTGDGKGNPAAKKGGKEPFVQQFELKDVYPHFCDRKTKLLPLADVPYVLRAMGLTIYSEEEKSIREQVEKVDGMGKPVSMKTMQGWIEEHGSKYVKSYDDAYSAVGTLCHEGIIGDKSGRIQVPFLRHLVSEVGDKIKAETFDKIMKGGDSAVGTAIKGDSCPLDEFLNFLQK
Ga0186309_124102Ga0186309_1241021F036711VIDCLAFTSSGAMPVWQNVNLKQKAIFEIIQREETGDLPYYLNDEELDFFVRGLACGPHAKTYLPQLVERDKRPIYIARGYAPPTYSRVVKLRFYGPDPLMKDAGSSWPAGHEGELLEYIVGWRWLYAYWDGPLVDEVDEAWNTKQWPDIARSDWTWEGLRFVTPPYWVPEDGRPWRKARNEEVPIRVTKGKGRGKGAKGPAGNA
Ga0186309_124769Ga0186309_1247691F085123PVVPSDALTQLFECHLALETEQKSQYRRFRDRMDQETVEALQDHYREARKDERRCSDKHRSDVASVLKSLVEGSVHVNHRTSCGLLVDVAALRKRSSTDGFVHVDLDSNVTFVRSLDHDDPATAGIVIEGAVALRRRILQKQGLRLVTVRESEWRDLDESKEKRRHLRNLLSALGDVLE
Ga0186309_124787Ga0186309_1247871F004725WLKARLWKSRSQTDLLQFSVAIVPMATSAPLLGKAAHSKASIFYGADEYLEELKKKYEHDHEIAALKNALPGEGDPNAAGVAQSNDKMLSVQKNNENRSLKTNRLFPTPNKPDPMPQNLAFLFTKITPEQMIYMWNVLTAIFCTQVLMVIGYCAALATFPDYWWTCTLCFGVPFSYIAIQNIYIDHDVMHGATFPVYE
Ga0186309_125454Ga0186309_1254541F030772VMHGATFPVYEWQRFLTHPFADFFSLPWEEFVLEHNRHHASTVDLLIQGEFGWDPEEFHYALQQWAGPWGSNWYKYLLTVPFIPVIHFFGLNDTGSLFALEWWMHFPDEGAGGKCNKEFWSKWVPRRVKHNAFVLGLWTCVWLLGTYPLGRPLSEGWRFMFAVSFFARVGYSAAWMFITNFTHSLPWNEFLA
Ga0186309_126498Ga0186309_1264981F057101RKFKLDDPVTSRLTELKVWRKRNGEEDRATKDLERIEFHLRFAKRPNALCTLLVGKLLECEMDELPDLVKAEKIMTDFKLDEDACSKMREIIEKRHEDEDRVIASVRKHLNSASNASSMLCKIARQLIDGQDLPDPPERPSKGKGGGKDSGKEDVERSERRDRDGADRHHDRDRHKRDRS
Ga0186309_127229Ga0186309_1272291F001154RATWLKPLGSEYLARPEKATSPGMVKVTVGKAEDPWCEIELTEEDVEDWKKGVDITEEKLKEVIQLPPITLDNCHEREDGDLQWDEITFEEEVNGKYWHAVIMALHRIREDFVKKQRKMKHLDWYMTMKKTSDKRNAKYYV
Ga0186309_127501Ga0186309_1275012F088941FWPNRLHTASPLSKLDMSVISPYQTQGKWTHSSGGEINISVDGTGQSVVINHPTVGKQTLEVRKFCQGDGLDYFGFKGKLDGNKITWNNGVVWTKQA

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