Sample 3300017212

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Sample 3300017212

3300017212: Metatranscriptome of marine eukaryotic communities from Antarctic Ocean in f/2 medium w/o silicate, 4 C, 31 psu salinity and 521 ?mol photons light - Myrionecta rubra CCMP 2563 (MMETSP0798)

Overview

Basic Information
IMG/M Taxon OID	3300017212 Open in IMG/M
GOLD Reference (Study \| Sequencing Project \| Analysis Project)	Gs0128947 \| Gp0212325 \| Ga0186613
Sample Name	Metatranscriptome of marine eukaryotic communities from Antarctic Ocean in f/2 medium w/o silicate, 4 C, 31 psu salinity and 521 ?mol photons light - Myrionecta rubra CCMP 2563 (MMETSP0798)
Sequencing Status	Permanent Draft
Sequencing Center	National Center for Genome Resources
Published?	N
Use Policy	Open

Dataset Contents
Total Genome Size	34196124
Sequencing Scaffolds	14
Novel Protein Genes	14
Associated Families	13

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
Not Available	7
All Organisms → cellular organisms → Eukaryota → Cryptophyceae → Cryptomonadales → Hemiselmidaceae → Hemiselmis → Hemiselmis andersenii	1
All Organisms → cellular organisms → Eukaryota → Cryptophyceae → Pyrenomonadales → Geminigeraceae	2
All Organisms → cellular organisms → Eukaryota → Cryptophyceae	2
All Organisms → cellular organisms → Eukaryota → Cryptophyceae → Pyrenomonadales → Geminigeraceae → Guillardia → Guillardia theta → Guillardia theta CCMP2712	2

Ecosystem and Geography

Ecosystem Assignment (GOLD)
Name	The Marine Microbial Eukaryote Meta/transcriptome Sequencing Project (mmetsp)
Type	Host-Associated
Taxonomy	Host-Associated → Human → Digestive System → Large Intestine → Fecal → Host-Associated → The Marine Microbial Eukaryote Meta/transcriptome Sequencing Project (mmetsp)

Alternative Ecosystem Assignments
Environment Ontology (ENVO)	marine biome → marine water body → sea water
Earth Microbiome Project Ontology (EMPO)	Free-living → Saline → Water (saline)

Location Information
Location	Southern Ocean
Coordinates	Lat. (^o)	N/A	Long. (^o)	N/A	Alt. (m)	N/A	Depth (m)	N/A
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F004150	Metagenome / Metatranscriptome	450	Y
F011303	Metagenome / Metatranscriptome	292	N
F011561	Metagenome / Metatranscriptome	289	Y
F012426	Metagenome / Metatranscriptome	280	Y
F026478	Metagenome / Metatranscriptome	197	Y
F039949	Metagenome / Metatranscriptome	162	Y
F046194	Metagenome / Metatranscriptome	151	Y
F073633	Metagenome / Metatranscriptome	120	N
F074943	Metatranscriptome	119	N
F086658	Metagenome / Metatranscriptome	110	Y
F086664	Metagenome / Metatranscriptome	110	N
F101267	Metagenome / Metatranscriptome	102	N
F101270	Metagenome / Metatranscriptome	102	N

Associated Scaffolds

Scaffold	Taxonomy	Length	IMG/M Link
Ga0186613_102945	Not Available	1893	Open in IMG/M
Ga0186613_104070	Not Available	1659	Open in IMG/M
Ga0186613_105100	Not Available	1505	Open in IMG/M
Ga0186613_105705	Not Available	1432	Open in IMG/M
Ga0186613_105712	All Organisms → cellular organisms → Eukaryota → Cryptophyceae → Cryptomonadales → Hemiselmidaceae → Hemiselmis → Hemiselmis andersenii	1431	Open in IMG/M
Ga0186613_106139	Not Available	1378	Open in IMG/M
Ga0186613_109613	All Organisms → cellular organisms → Eukaryota → Cryptophyceae → Pyrenomonadales → Geminigeraceae	1066	Open in IMG/M
Ga0186613_109878	All Organisms → cellular organisms → Eukaryota → Cryptophyceae	1048	Open in IMG/M
Ga0186613_109934	All Organisms → cellular organisms → Eukaryota → Cryptophyceae → Pyrenomonadales → Geminigeraceae	1045	Open in IMG/M
Ga0186613_114563	Not Available	790	Open in IMG/M
Ga0186613_115967	All Organisms → cellular organisms → Eukaryota → Cryptophyceae	734	Open in IMG/M
Ga0186613_118098	All Organisms → cellular organisms → Eukaryota → Cryptophyceae → Pyrenomonadales → Geminigeraceae → Guillardia → Guillardia theta → Guillardia theta CCMP2712	651	Open in IMG/M
Ga0186613_119875	Not Available	592	Open in IMG/M
Ga0186613_122786	All Organisms → cellular organisms → Eukaryota → Cryptophyceae → Pyrenomonadales → Geminigeraceae → Guillardia → Guillardia theta → Guillardia theta CCMP2712	506	Open in IMG/M

Sequences

Scaffold ID	Protein ID	Family	Sequence
Ga0186613_102945	Ga0186613_1029453	F039949	LIVKTTIVVMMIAFITVRSSLVPLIEGLCAQIYFRFEISVVCSHLLLFFFVKEKTC
Ga0186613_104070	Ga0186613_1040702	F011561	VKREATIAGLASEGLAMISGSAGAGSSAVVGPTPTDPVPVEFRKCGRDLKTLSAAQKHTNEERGGSRDPGVRRPGAGRGQLPARSKIWSSLFP
Ga0186613_105100	Ga0186613_1051001	F046194	VHGERTEHARQPDGAQDSTITPSISGTGSLRETTRLQGQATSPYLRSKVYAARVKTCARRTTAHLHPCCALRTSLRASDSPDKAQHQLSPPKLRIPIPCYTSYNTISPSYTPLPGVMTALALRTSLILVVEFHAVCRCTICGAQADSEARIPGITMTARVDIFTNTVTSNPQISQPKFPNQICDSHPDSIEQTTNVHFIPPLTINKDKKNEVLKYKLTLSLRPL
Ga0186613_105705	Ga0186613_1057051	F012426	MKLLYICTCVFLIYNILEYVYHSACDNKFSVQLDPYLVQRKYTFRIYVSKLITTQSSSPYKVVLVSTSMVIVIVLLIQHVNL
Ga0186613_105712	Ga0186613_1057121	F073633	PQKMRRVVLLAVAGSAAAFLPVAPFGSTAPALKASSGLRLRSGRTSIKMVDWDYDKKEKEDNYDGPGSERGQINRSDEVGARSSERLANAKKNAQDGDLGSKSGLAKGNLKEGDRDPISGRLILDPLKIPTAEQGAPGTWAEYLAMRKLKEGGSARDFAGNVIDDVKPSYAVQDGTWGPPKDAKENVDDIFEKQPVSEKAPVFEVDAEMAARNAERASEDAKKQDEIESRMAKWMADAAAKKAAGN
Ga0186613_106139	Ga0186613_1061391	F086658	MPSGNGQDGMMSALWEMGCEEDSDYHQVVGDGASGQGCGPLCQIRLVESQVRVIERAEKRSTPQG
Ga0186613_109613	Ga0186613_1096131	F011303	MAPLSQAQVDTWVEDFMEAMQAPCDWKKLQELMNKRCTVEMPDEPKCKKFDDWKKKAEPFFNSFKAAKRTMPKGTRPIIVQSKKDEVEVIYAEQVKFTWTKGLEETYPNCTIVSGDKAKIFIYNRVLINGKGEGTWFQPVFSKNDFKMADREEDKDSLLDQIYEDFTATNERFADDMKVEFPVAGKMDKTQMFNLLSQFGDVTRSMMKGCPPVNMSTGKDEIFEGIVPAQYSFKWNTALNDTFKLELAHGADVVLSSYDCLKIQKGKVISFAPHFDAQVNIKPAGKSGAN
Ga0186613_109878	Ga0186613_1098781	F101267	MGCCSSRAPGSHEWQANVPGSYKQNPVPIVNKKQEVPADFFQKCFMKGYLRTLPKKQRIWCMIHENNFYFMDSAEDTEPRKFFCFDGCLVKLNGKELEIQTAELMGGSVPRATYKFMAEDEDKALEWYEAALKASSRCN
Ga0186613_109934	Ga0186613_1099341	F011303	PQALPRTLLESQTPAVTPVTAMAPLSQAQVATWVEDFMEAMQSPCDWKKLQELMNKRCTVEMPDEPKCKKFDDWKKKAEPFFNSFKAAKRTMPKGTRPIIVQSKKDEVEVIYAEQLKFTWTKGLEDTYPNCTIVSGDKAKIFIYNRVLINGKGEGTWFQPVFSKNDFKMADREEDKDSLLDQIYEDFTATNERFSDDMKVEFPVAGKMDKTQMFNLFSQFGDVTRSMMKGCPPVNMSTGKDEIFEGIVPAQYSFKWNTALNDTFKLELAHGADVVLSSYDCLKIQKGKVISFAPHFDAQVNIKPVGKSGAN
Ga0186613_114563	Ga0186613_1145631	F074943	MNMADETVSMMNDAIASQGSDIDESQRQIKRLLEENLEIWKANLKE
Ga0186613_115967	Ga0186613_1159671	F026478	RILTLVAVFLLALLALATVEGAKPKRKQVGVTDEEVVKAKEFALAEIVKLSDSYRDMKITKVISAETARSAFADGTNFFLKMELECKSVCAAPLSPASTCRRGHYKGVNEIIVFEKDDGHYDGIAIDEFPQMDGEYHPCTPSYKGPEKCNPAEHRTPEQAALFLDDDEEDAAKDEL
Ga0186613_118098	Ga0186613_1180981	F101270	MRFTKLMMSMLPAVEPWVVPGENVMNPGGVENVNPLDTLSSEYHPWGVRIAPLEYGATDYAQFGEVCGSEGPEGGEWAC
Ga0186613_119875	Ga0186613_1198752	F004150	FEVKIAFIIARKRNIVVVLFGTLKVQSFMLTEVRDCDLLIVVTSSTFLKRKDMLKEKSS
Ga0186613_122786	Ga0186613_1227861	F086664	EISPFKVGQIQKLLSDVSKDALPELGGQIAPYFAVVQIVFLMMFLAYFVLGVVSVAVDFDAMDCACAEDSWIWLYVLLVIVIPTSMGVVMGFIKGAMAAADLEAKLGFDTAIFTALPPPVLYITFGILGIVLWANMTEECGDFYSGSHGLLFVIFHIQVVIMSIASIF

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