3300017200: Metatranscriptome of marine eukaryotic communities from unknown location in JM medium, at 23 C, 0 psu salinity and 285 ?mol photons light - Cryptomonas curvata CCAP 979/52 (MMETSP1050)

Overview

Basic Information

• IMG/M Taxon OID: 3300017200
• GOLD Reference (Study | Sequencing Project | Analysis Project): Gs0128947 | Gp0211829 | Ga0186117
• Sample Name: Metatranscriptome of marine eukaryotic communities from unknown location in JM medium, at 23 C, 0 psu salinity and 285 ?mol photons light - Cryptomonas curvata CCAP 979/52 (MMETSP1050)
• Sequencing Status: Permanent Draft
• Sequencing Center: National Center for Genome Resources
• Published?: N
• Use Policy: Open

Dataset Contents

• Total Genome Size: 34455691
• Sequencing Scaffolds: 30
• Novel Protein Genes: 31
• Associated Families: 18

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
All Organisms → cellular organisms → Eukaryota → Cryptophyceae → Cryptomonadales → Cryptomonadaceae → Cryptomonas → Cryptomonas curvata	12
All Organisms → cellular organisms → Eukaryota → Cryptophyceae	10
Not Available	1
All Organisms → cellular organisms → Eukaryota → Cryptophyceae → Pyrenomonadales	2
All Organisms → cellular organisms → Eukaryota → Cryptophyceae → Pyrenomonadales → Geminigeraceae → Guillardia → Guillardia theta → Guillardia theta CCMP2712	4
All Organisms → cellular organisms → Eukaryota → Cryptophyceae → Pyrenomonadales → Geminigeraceae → Guillardia → Guillardia theta	1

Ecosystem and Geography

Ecosystem Assignment (GOLD)

• Name: The Marine Microbial Eukaryote Meta/transcriptome Sequencing Project (mmetsp)
• Type: Host-Associated
• Taxonomy: Host-Associated → Human → Digestive System → Large Intestine → Fecal → Host-Associated → The Marine Microbial Eukaryote Meta/transcriptome Sequencing Project (mmetsp)

Alternative Ecosystem Assignments

• Environment Ontology (ENVO): marine biome → marine water body → sea water
• Earth Microbiome Project Ontology (EMPO): Free-living → Saline → Water (saline)

Location Information

• Coordinates
  • Lat. (^o): N/A
  • Long. (^o): N/A
  • Alt. (m): N/A
  • Depth (m): N/A

Associated Families

Family	Category	Number of Sequences	3D Structure?
F010032	Metagenome / Metatranscriptome	309	N
F012351	Metagenome / Metatranscriptome	281	Y
F019282	Metagenome / Metatranscriptome	230	Y
F020015	Metagenome / Metatranscriptome	226	N
F025760	Metagenome / Metatranscriptome	200	Y
F026478	Metagenome / Metatranscriptome	197	Y
F032673	Metagenome / Metatranscriptome	179	Y
F034819	Metagenome / Metatranscriptome	173	Y
F036560	Metagenome / Metatranscriptome	169	N
F041012	Metagenome / Metatranscriptome	160	Y

Associated Scaffolds

Scaffold	Taxonomy	Length
Ga0186117_102184	All Organisms → cellular organisms → Eukaryota → Cryptophyceae → Cryptomonadales → Cryptomonadaceae → Cryptomonas → Cryptomonas curvata	2022
Ga0186117_103054	All Organisms → cellular organisms → Eukaryota → Cryptophyceae	1720
Ga0186117_104120	Not Available	1483
Ga0186117_105547	All Organisms → cellular organisms → Eukaryota → Cryptophyceae	1276
Ga0186117_108244	All Organisms → cellular organisms → Eukaryota → Cryptophyceae → Cryptomonadales → Cryptomonadaceae → Cryptomonas → Cryptomonas curvata	1040
Ga0186117_108401	All Organisms → cellular organisms → Eukaryota → Cryptophyceae → Cryptomonadales → Cryptomonadaceae → Cryptomonas → Cryptomonas curvata	1031
Ga0186117_109401	All Organisms → cellular organisms → Eukaryota → Cryptophyceae	967
Ga0186117_109562	All Organisms → cellular organisms → Eukaryota → Cryptophyceae	958
Ga0186117_110949	All Organisms → cellular organisms → Eukaryota → Cryptophyceae → Cryptomonadales → Cryptomonadaceae → Cryptomonas → Cryptomonas curvata	886
Ga0186117_111606	All Organisms → cellular organisms → Eukaryota → Cryptophyceae → Cryptomonadales → Cryptomonadaceae → Cryptomonas → Cryptomonas curvata	855

Sequences

Scaffold ID	Protein ID	Family	Sequence
Ga0186117_102184	Ga0186117_1021843	F091436	MKGYDALDCTLISLGSAGHRLGQLSELCFLPDKVARFLFEFHASDYKGLGLPVIPSSASSGTIHKLLKTPHVCI
Ga0186117_103054	Ga0186117_1030541	F084315	VKAMEKATLLECPAKTRGRFSRPSVMIAVTAVSALCILVAAVSFQRMAAVSSAPDELLTEKLVLFKMAPPPEPWSPPENLWMYWGDAPNKRFGHSGDNLRHLVRLGRIGGGEYRDPHFLESFKTATFRDLSEQCCTALLIAPMKHNMPVWNAYSNIAQRLRNYVANGNHIIFTGGSLVSMEFINTYFWYNIEPTSTGSGGHFDGSGYGNWSPGPWRKLVDKNLPWVFKMTPDTLYQDHTSVQTAQLSSLPDGARVIYMSPQSSPVFQIRFCQRLSDKHGEAPIKTLPRDCWRYAAKGYPCSCGTLTYVGYDWHYDQTSEAWDKVMLGAVEFQSDSEVSATNSPNCYQAPKKVYDPTDPLPPPKCST
Ga0186117_104120	Ga0186117_1041201	F041012	MEDAGIIKLYDPSPIPCLYVAPVANMVGRVPLFPLYLAGNSTPTIPHRFSKHKGSGFPMGSADSAAADGRRGSNTYEVNTWLWLFGQGKPRLGGLTVEETALKKSAKREEQAKRSVETRRRRKAARSSSQ
Ga0186117_105547	Ga0186117_1055471	F020015	APFMALGSASVVAPVMIGSKSSEWQGYAKRVFLVSLAAVAIICIGVVVAERKSSNQNDALGGAYYAVTKPPAFNFNRFIENTWIYDGRSASRDEEGFIEKLARRHHYKLQIHHLNTFKDNEFRASLFSQDIHCIIFPPLSHFPGIGELAKKDLRGYVSAGNNVVFIGSYEWLSVMNDIFGFQLMSDYKDGPYYRNDRNVRGTPFQWSMSRLEQPDGSIYSVKIDSIPMEGACMFDTMGACVVFFTKYNLGTIVYIAFDYDTPYGIGHWDQILHAAMMM
Ga0186117_108244	Ga0186117_1082441	F044900	VRLDINLLKPSRIEFADQPAPSLSLPEGHYSPPKWLEYVYRTAHPVLRWLPTKLAEWIGENLQDELEFPDKADQRAEPGSGWTPAELNHILQTHVVDGTLTTFGCVEWESNLCRGVMRARCYPFDMPKHRFHGMNPKDTILVIPPYPYCIEEERNDVPLEDCWY
Ga0186117_108401	Ga0186117_1084011	F034819	VLVVPPYPYCIEEDRHAVDLEDCWTARPQLFFSCHLRPNGGRKPTDGRHKIGPDDLRYNLIFFSTFKELTLPIKGPMEDAGVVKLYEPSPTQCLYVAHAQNMVGRIPLMPCFLDGNATPTIPHKYSKNKNSCFLAGCADAAAEDGRRGSNVYEVNPWLWQFGSGKPHLGGLTIEETSDRQDASRKASDKRRKETREGRRGS
Ga0186117_109401	Ga0186117_1094011	F010032	LRMVSSSSRLVNTLAVSVILGCVAFVAWRAQPSSQSVDELFQAKALETQQTTELSFLQTSAFVDQIYMYAGLAVDNKHETGFIAKEIRKHNYQTVIRLFTSLDDATFRAVLWDQAVHCLVWPPFVRYPGISETAKTDLRAYTAAGNNVVFIGNYVAVQFMNDVYGFQLMDDYQNGPYYRNDRNVRNTPYQFLPSRIEQASIETYAVNTRSIPPGGKSMLDTLGATVAFVVRYDLGTVCWIGYNYNTPFHADQWTRVLHAAIDM
Ga0186117_109562	Ga0186117_1095621	F087277	ITTMLNDGEVRRLRTAFFAVASAAAIFAAVICILSSTGSSNAAAPISGTERWLESGRASIDMFHVARSPMQKYELRGDPLPRQVHYYSNVGDRLPVLADEERETRQTFQELVQLGHTCVVLMRRAIWSIDPTVFEPQYDLQVRLDSIHTGLKQLAAQTGVYLTNPPVVQVDESVFDEAADDISRFRKLVERIPEMHNAQFYWIVQYNIIRTELRKISSQLTEVVNVAKHRFLEVADSIDSMRVNIETIHDDRRR
Ga0186117_110346	Ga0186117_1103462	F036560	MLENLYGKHAAALYAQAADFNKTARFYYMKAEDAYYLANAQASYDDWRRARRQWDYFYRYVSGFVVCSFIYF
Ga0186117_110949	Ga0186117_1109491	F012351	MFADLHHLHQFISLEQGGAVTATSWVGGTNAGEADIYFGATHINADNVNESWLSDDQASDFNAGVNGPIDRNEGAYNGYAAVKAFWADTTNMDNLRGGDATGLATPGAQEISIAADGTVSGFGNTVHTNSADSFY
Ga0186117_111606	Ga0186117_1116062	F036560	MLENLYGKHAAALYAQAADFNKTARFYYMKAEDAYYLANAQASYDDWRRARRQWDYFYRR
Ga0186117_112347	Ga0186117_1123471	F096602	LNVKTDFDLQGDGLVWYARPQLFFNCTLCPTGAKGFSGSHKEVSLVYFSTFEPIELTPDSIMQRAGVPMLYDSASNPRLPCLYICPVANVLGRAPLIPCFIGGNSHPTIPYRFKDDRRLGHASADTQRDRGNGSRLYEVHIWMWRYGRGRARTVSIAEAERIRSERLSESRIRAAETRKRRSEAAAAGGAEGGSRA
Ga0186117_112450	Ga0186117_1124501	F036560	MLENLYGKHAAALYAQAADFNKTARFYYMKAEDAYYLANAQASYDDWRRARRQWDYFYRCDHRALNMLY
Ga0186117_112566	Ga0186117_1125661	F032673	QNMVLLLDYGAVPIDQVKSEPSANQPGRHSRKIVAILGCIAAFAMIAMAYQFSAEDDGTATLAALKSQEINDILSKAKHMSTEQLQAEVSALEAKTQRPLRTTSLVASEDTAANPMGGVLENVPATIVAPVPGPPDFNGASAVVARLPNIGFAPSMLEEKGFESRGTFTVRQSRAGESFYLRIYGKLNHNIRCTIRGYRNLMGDFTGNTIYTGFKLIYNGKSQIHTGHIPRGIQGEFDIMTCRDMGNGEVQYFRIRYD
Ga0186117_112792	Ga0186117_1127921	F096602	MISYVISYLISYCEQDCVVLLAPFPNNPNPVESFNVKTDFDLQGDGLVWYARPQLFFNCTLCPTGAKGFSGSHKEVSLVYFSTFEPIELTPDSIMQRAGVPMLYDSASNPRLPCLYICPVANVLGRAPLIPCFIGGNSHPTIPYRFKDDRRLGHASADTQRDRGNGSRLYEVHIWMWRYGRGRARTVSIAEAERIRSERLSESRIRAAETRKRRSEAAAAGGAEGGSRA
Ga0186117_113077	Ga0186117_1130772	F012351	VLTVVLRQMFADLHHLHQFVSLEQGGSVTAASWVGGTGAGEANIYFGATHITADNVHESWLSDDQVSDMNAGVNGPIDRNEGAYNGYAAVKAFWADTTNMDNLRGGDATGLATPGAQEVTSDADGVSGFGNTVHSYSGDSFY
Ga0186117_113501	Ga0186117_1135011	F096687	MQFEVLYGKKAAALYTQAGDYQKTARFYYKKAEDTYYQANNWAAYDDWRRARDQWDYFYSRNR
Ga0186117_115690	Ga0186117_1156902	F012351	MVQVLTVVLRQMFADLHHLHQFVSLEQGGSVTAASWVGGTGAGEANIYFGATHITADNVHESWLSDDQVSDMNAGVNGPIDRNEGAYNGYAAVKAFWADTTNMDNLRGGDATGLATPGAQEVTSDADGVSGFGNTVHSYSGDSFY
Ga0186117_116775	Ga0186117_1167751	F092159	VETGADVAPQQTSMLNRVVATTMPVQQTTMLNWANLSDRAQKVKGLNFCASQFVTEDEVKYCVAKLFSGDVKFATMADY
Ga0186117_117521	Ga0186117_1175212	F019282	LADINTINTWAEPHNANGVTPNTIIDSNDEPPANNQQRIATRNY
Ga0186117_118642	Ga0186117_1186422	F019282	MVLGRRMFSFLAELAPGYVIPDINTINTWAEPHNANGVTPNTIIDSNDEPAGNNQQRIIARNY
Ga0186117_119527	Ga0186117_1195271	F025760	MFLVPLSALRNDPYSMFDTKATGNWYKADEPWGAFLQTDGNPAVTVHPYESDPSSGSFNPQAQTTWVPTDWSSWPNYNVHGYGIY
Ga0186117_120091	Ga0186117_1200912	F069742	VYERKQEEQVFCVLHVESILGKLPVVPIGDTGTIQFSMRQHAQDFVGAAFDTIEGSGDGSRWWFINTWALSWAR
Ga0186117_120564	Ga0186117_1205641	F032673	EDEGTVTLAAMNAQEMRDLLSNAKHMSTAQLQAAVSELESEKHGKSARTISLVASEDTAANPMGGVLENVPATIVAPVPGPPDFNGASAVVARLPNIGFAPSLLEEKGFESRGTFTVRQSRAGESFYLRIYGKLNHNIRCTVRGYRNLMGDFTGNTVYTGFKLIYNGKSQIQTGHIPRGITGEFDIMTCR
Ga0186117_121373	Ga0186117_1213731	F036560	PRKLCRCSRMVFSHLQQTEELYGKHAAALYAQAADFNKTARFYYMKAQDAYYLANAQASYDDWRRSRRQWDYFYRRK
Ga0186117_122304	Ga0186117_1223041	F012351	QMFADLHHLHQFISLEQGGSVSTVSTVSGTTAGEADIYFGAAHMNVDNVAEDWIDDDQVSDMSVGGNGPVTRNEGMYNAYTAIKAYWSDTINMDNLRGGDATGMATPGAMEVTSDSDGVSGAGNTVHTYSGDSFY
Ga0186117_122706	Ga0186117_1227061	F096687	VEATMREILYGKKAAALYTQAGDYQKTARFYYKKAEDTYYQANNWASYDDWRRARDQWDYFYSRNR
Ga0186117_122952	Ga0186117_1229521	F026478	KMAPSSISRVALSALIVIVLAVSCSAKPKRKQVSIEDEDVIKARDFALAEIIKLTDSYRDMKINKVISAETARSAFADGTNYFLKMELECTSICAAPLSPASTCRRGHYKGVNEIIVFEKDDGHYDGIAIDEFPQMDGEYHPCTPSYKGPEKCNPAEHRTPEQAALFLDD
Ga0186117_123089	Ga0186117_1230892	F025760	MHRFDTKATGNWYKADEPWGAFLQTDGNPAVTVHPYESDPSSGSFNPQAQTTWVPTDWSSWPNYNVHGYGIY
Ga0186117_123125	Ga0186117_1231252	F019282	MFSLLRTTMLEYVPDINTINTWAEPHNANGVTPNTIIDSNDEPPANNQQRIATRNY
Ga0186117_123407	Ga0186117_1234071	F012351	TMFADIHHLHQFMSLEQGGSVTAISTASGTAAGVSDTYFGAEHINADDASKAWMSDDQISDMAAGVNGPVDRNEGMYNAYAGVKAYWSDTTVMDNLRGGDATGLATPGAQEGVSEADGVSGFGNTVHSYSGETFY