3300017166: Metatranscriptome of marine eukaryotic communities from Atlantic Ocean in filtered seawater, 15 C, 29.4 psu salinity and 162 ?mol photons light - Favella taraikaensis Fe Narragansett Bay (MMETSP0436)

Overview

Basic Information

• IMG/M Taxon OID: 3300017166
• GOLD Reference (Study | Sequencing Project | Analysis Project): Gs0128947 | Gp0212235 | Ga0186523
• Sample Name: Metatranscriptome of marine eukaryotic communities from Atlantic Ocean in filtered seawater, 15 C, 29.4 psu salinity and 162 ?mol photons light - Favella taraikaensis Fe Narragansett Bay (MMETSP0436)
• Sequencing Status: Permanent Draft
• Sequencing Center: National Center for Genome Resources
• Published?: N
• Use Policy: Open

Dataset Contents

• Total Genome Size: 23519948
• Sequencing Scaffolds: 14
• Novel Protein Genes: 16
• Associated Families: 16

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
All Organisms → cellular organisms → Eukaryota → Sar → Alveolata → Ciliophora → Intramacronucleata → Spirotrichea	9
All Organisms → cellular organisms → Eukaryota → Sar → Alveolata → Ciliophora → Intramacronucleata → Spirotrichea → Stichotrichia → Sporadotrichida → Oxytrichidae	2
All Organisms → cellular organisms → Eukaryota → Sar → Alveolata → Ciliophora → Intramacronucleata → Spirotrichea → Stichotrichia → Sporadotrichida → Halteriidae → Halteria → Halteria grandinella	1
All Organisms → cellular organisms → Eukaryota → Sar → Alveolata → Ciliophora → Intramacronucleata → Spirotrichea → Stichotrichia → Sporadotrichida	1
All Organisms → cellular organisms → Eukaryota → Sar → Alveolata → Ciliophora → Intramacronucleata → Spirotrichea → Choreotrichia → Tintinnida → Xystonellidae → Favella → Favella ehrenbergii	1

Ecosystem and Geography

Ecosystem Assignment (GOLD)

• Name: The Marine Microbial Eukaryote Meta/transcriptome Sequencing Project (mmetsp)
• Type: Host-Associated
• Taxonomy: Host-Associated → Human → Digestive System → Large Intestine → Fecal → Host-Associated → The Marine Microbial Eukaryote Meta/transcriptome Sequencing Project (mmetsp)

Alternative Ecosystem Assignments

• Environment Ontology (ENVO): marine biome → marine water body → sea water
• Earth Microbiome Project Ontology (EMPO): Free-living → Saline → Water (saline)

Location Information

• Location: Atlantic Ocean
• Coordinates
  • Lat. (^o): 41.30051
  • Long. (^o): -71.71543
  • Alt. (m): N/A
  • Depth (m): 1

Associated Families

Family	Category	Number of Sequences	3D Structure?
F011523	Metagenome / Metatranscriptome	290	Y
F015657	Metagenome / Metatranscriptome	253	Y
F018935	Metagenome / Metatranscriptome	232	Y
F019022	Metagenome / Metatranscriptome	232	Y
F019023	Metagenome / Metatranscriptome	232	Y
F026284	Metagenome / Metatranscriptome	198	Y
F034341	Metagenome / Metatranscriptome	175	Y
F044532	Metagenome / Metatranscriptome	154	Y
F045792	Metagenome / Metatranscriptome	152	Y
F051179	Metagenome / Metatranscriptome	144	Y
F062157	Metagenome / Metatranscriptome	131	Y
F067781	Metagenome / Metatranscriptome	125	Y
F071293	Metagenome / Metatranscriptome	122	Y
F081745	Metagenome / Metatranscriptome	114	Y
F083237	Metagenome / Metatranscriptome	113	Y
F096063	Metagenome / Metatranscriptome	105	Y

Associated Scaffolds

Scaffold	Taxonomy	Length
Ga0186523_101750	All Organisms → cellular organisms → Eukaryota → Sar → Alveolata → Ciliophora → Intramacronucleata → Spirotrichea	2222
Ga0186523_102046	All Organisms → cellular organisms → Eukaryota → Sar → Alveolata → Ciliophora → Intramacronucleata → Spirotrichea	2117
Ga0186523_102072	All Organisms → cellular organisms → Eukaryota → Sar → Alveolata → Ciliophora → Intramacronucleata → Spirotrichea → Stichotrichia → Sporadotrichida → Oxytrichidae	2108
Ga0186523_103244	All Organisms → cellular organisms → Eukaryota → Sar → Alveolata → Ciliophora → Intramacronucleata → Spirotrichea → Stichotrichia → Sporadotrichida → Oxytrichidae	1797
Ga0186523_106059	All Organisms → cellular organisms → Eukaryota → Sar → Alveolata → Ciliophora → Intramacronucleata → Spirotrichea	1342
Ga0186523_107984	All Organisms → cellular organisms → Eukaryota → Sar → Alveolata → Ciliophora → Intramacronucleata → Spirotrichea → Stichotrichia → Sporadotrichida → Halteriidae → Halteria → Halteria grandinella	1127
Ga0186523_108973	All Organisms → cellular organisms → Eukaryota → Sar → Alveolata → Ciliophora → Intramacronucleata → Spirotrichea	1023
Ga0186523_109618	All Organisms → cellular organisms → Eukaryota → Sar → Alveolata → Ciliophora → Intramacronucleata → Spirotrichea	963
Ga0186523_110107	All Organisms → cellular organisms → Eukaryota → Sar → Alveolata → Ciliophora → Intramacronucleata → Spirotrichea	920
Ga0186523_111263	All Organisms → cellular organisms → Eukaryota → Sar → Alveolata → Ciliophora → Intramacronucleata → Spirotrichea → Stichotrichia → Sporadotrichida	815
Ga0186523_112594	All Organisms → cellular organisms → Eukaryota → Sar → Alveolata → Ciliophora → Intramacronucleata → Spirotrichea → Choreotrichia → Tintinnida → Xystonellidae → Favella → Favella ehrenbergii	713
Ga0186523_112901	All Organisms → cellular organisms → Eukaryota → Sar → Alveolata → Ciliophora → Intramacronucleata → Spirotrichea	689
Ga0186523_113932	All Organisms → cellular organisms → Eukaryota → Sar → Alveolata → Ciliophora → Intramacronucleata → Spirotrichea	609
Ga0186523_114169	All Organisms → cellular organisms → Eukaryota → Sar → Alveolata → Ciliophora → Intramacronucleata → Spirotrichea	590

Sequences

Scaffold ID	Protein ID	Family	Sequence
Ga0186523_101750	Ga0186523_1017503	F015657	MLQDGQEILEGRFQIVKKLGSGAFGEIYKVEKKKTKQFYAAKIVSFAFIA
Ga0186523_102046	Ga0186523_1020463	F034341	MELYASENNFNIFYEKKRRELRNLQQLNEFVKPNPYFVYFMFKDTIHVDDYGSIKETLFKFPSMTRGSQN
Ga0186523_102072	Ga0186523_1020721	F062157	MRHCIDNQIESMVLMDSYVKKNEIRLNTFEYLMRSHEHTLKDQFIKSNFIDRLFSDYIRDFREFNIQFSKIDIEFLAFRRSYPLRLESISLLNTTLMLKKNAPSVYTEVLMYARRHFLCRNEMNLLQTGSMSNKEATSLLLFAIILESNEEDLIYVMVQEGVHRVIKGHLKEYPSLNKRFPVLHQFISGATRSNF
Ga0186523_103244	Ga0186523_1032445	F083237	MVEAFVSTKFFLSVASKMNYDDGIVFTENNIVAYLAELEEYIGSLITYMAFKRDDPNAATSAIPLAQLNEKKFGQRDLDIDLNSIPAKPQREDPVLE
Ga0186523_104399	Ga0186523_1043992	F067781	MFVPLRNAKSQKADFDCVAKIMAIHEMDAYTNELKLRDASGTTFYTLALRLKFPHLKAGQAVRVRSATWDETSNQKSVLSLQHYSNIMTFIGSSKLAGAVARVQDDSAADRAELAKDVPSVAVTISEIDRKYANLPSTSLEELFGGKATADTYRTSFCVTRVEPADIRDAVKVYDRKAKKVSTAKGAKGGELVWNVQLSVKDASTLSNANQYRILNYSHEGLGAAFLGKPSNLWTDAAAAKRVEKSVANLTKFNVWVDAVVERKNGWYYIKDTKLRQ
Ga0186523_106059	Ga0186523_1060593	F019023	MKEGYKHPYHSAEHPISFSYYYYMKTLFEAVGPEQVSPHYESLSRSRRGLIFMFLYIGSITSLSRMGSWSHNEWLRAMVFHHEYIIAFYVGMSELRHFTFLVGPKFTNFYNVYTRYETQQLVSQWADHTEEAQM
Ga0186523_107984	Ga0186523_1079842	F044532	MSAINFYSSIFPEYYWQKPQHDLGNRVVHSSLYKTMNPIRSRYDYAPNEYSQMPFYLGSVPQLNWLYGSLDYSFQKYHK
Ga0186523_108973	Ga0186523_1089732	F011523	MRPDVTNETYVVFRALAKDTDGDFGKFVNSTKKPRDEAQRWRAFKNIARFVKNPVGYLYWKMDPFFAQNRIRVMWGFVIFHLWSSFLLYVMIKNKKEKMIEHWRYRIGETDKTHGQLNRDRRMPVNRIKNYVRYSNFHQVRRNKRISMIHLNWWCRDQNFRKYFEMRKKKDIKPALSGFAHESIFKETAAKNLEISQMRNTHESR
Ga0186523_109618	Ga0186523_1096181	F026284	VKMSEVASRIPVERATGKYKRDWHSTQAEQDAYDDRMRRAMNPQISDYVQNGELICFGVSEHTLEERQFEWTPKALHDLNVLKSWFPKRDLSMITRPAYQSDFNWTNYASRAQLRVALGLLFIRELPIKNFYVRCWLAYGWICWFIVRGVGRGLRHNRPIVLYNHAFNAKALVNYPDLFHWTISRVLPKNPPVPDAHREWRTRQTPVYHQYHKNVYRYRYRRPRYVQWDGSMNQPVMPFLHDQGTDVNNGTFKRNVNTSPQLK
Ga0186523_110107	Ga0186523_1101071	F071293	MVYKIRNKGFGAVFSGTGNVRAYPARKTMVNPDLSTHVTLQVQITRFTGMRVLHNYRNISRATKQFMMGDRFFEQLMILTIREHYFRPMYYKAPIENTFFLGRTLADLTDRHYALFANNQHPLQLAAYNEYNTFLQDLHDQASAARDEEDGQRFTQAIGEA
Ga0186523_111263	Ga0186523_1112631	F045792	MENAKIYAENVIRNRKEAINLRRFGVKMGALSAKLESAHRTQQIST
Ga0186523_111263	Ga0186523_1112632	F081745	MLQKCMKQMDSLGVAGSIGNFEQVFEDLDVKTGDMNAALDNIYSTSIDNGEVMDLLTQMR
Ga0186523_112594	Ga0186523_1125942	F019022	IKARMVFHITNYMRETNVWMIRKMRWILWGTFSFIPIYRNVYWDFLGRRVAWKDSLRGETEADKEAAAVADRADWGYTPRYEGKYDFSIKTKKQAEQTRE
Ga0186523_112901	Ga0186523_1129012	F051179	MIFFYTNFDKCRREIINYEEKRATPSMNKRHPKESKPEALALLRCHAQNLQFEPVCNDPFNDARECLFKMDGQMRICEPELNLFEECVHDPKSFARFQAMATPVQREARDYFSTIHRKNYFF
Ga0186523_113932	Ga0186523_1139321	F096063	MQGDLYSGRYSNDEIRRILEINARPTFLQKPEAAFYKKNALENGPTWAEKREFVHWLINDSNISASSKLYLRENQYWIEKYQLRGLKYGLFASSATFLFFPVIRRQPFVRRFAISMLPMAYFLNWGYVWGHENWWRRQKEVVVTYEIFTGNRHRTTMK
Ga0186523_114169	Ga0186523_1141692	F018935	MSSPQGSGRSTYSYYDYTKSYDSRFLNKYQSHTHWWAGRASGFIELLRLKSVRLKSNRNWMWFDVRYGTKFLYIFYMPQLVYLTASYAITPVWRRLDERYHLRFADGEFDDIDEVEPFVTYQQRKKPYTRRKYADAVKLVYEGKEEYDYAQEQPQRYR