3300017128: Metatranscriptome of marine eukaryotic communities from unknown location in K medium w/o silicate, at 23 C, 0 psu salinity and 659 ?mol photons light - Hemiselmis andersenii CCMP 1180 (MMETSP1042)

Overview

Basic Information

• IMG/M Taxon OID: 3300017128
• GOLD Reference (Study | Sequencing Project | Analysis Project): Gs0128947 | Gp0211824 | Ga0186112
• Sample Name: Metatranscriptome of marine eukaryotic communities from unknown location in K medium w/o silicate, at 23 C, 0 psu salinity and 659 ?mol photons light - Hemiselmis andersenii CCMP 1180 (MMETSP1042)
• Sequencing Status: Permanent Draft
• Sequencing Center: National Center for Genome Resources
• Published?: N
• Use Policy: Open

Dataset Contents

• Total Genome Size: 32192993
• Sequencing Scaffolds: 4
• Novel Protein Genes: 4
• Associated Families: 3

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
All Organisms → cellular organisms → Eukaryota → Cryptophyceae	4

Ecosystem and Geography

Ecosystem Assignment (GOLD)

• Name: The Marine Microbial Eukaryote Meta/transcriptome Sequencing Project (mmetsp)
• Type: Host-Associated
• Taxonomy: Host-Associated → Human → Digestive System → Large Intestine → Fecal → Host-Associated → The Marine Microbial Eukaryote Meta/transcriptome Sequencing Project (mmetsp)

Alternative Ecosystem Assignments

• Environment Ontology (ENVO): marine biome → marine water body → sea water
• Earth Microbiome Project Ontology (EMPO): Free-living → Saline → Water (saline)

Location Information

• Coordinates
  • Lat. (^o): N/A
  • Long. (^o): N/A
  • Alt. (m): N/A
  • Depth (m): N/A

Associated Families

Family	Category	Number of Sequences	3D Structure?
F010032	Metagenome / Metatranscriptome	309	N
F020015	Metagenome / Metatranscriptome	226	N
F082776	Metatranscriptome	113	N

Associated Scaffolds

Scaffold	Taxonomy	Length
Ga0186112_110132	All Organisms → cellular organisms → Eukaryota → Cryptophyceae	987
Ga0186112_111950	All Organisms → cellular organisms → Eukaryota → Cryptophyceae	873
Ga0186112_113239	All Organisms → cellular organisms → Eukaryota → Cryptophyceae	801
Ga0186112_113261	All Organisms → cellular organisms → Eukaryota → Cryptophyceae	800

Sequences

Scaffold ID	Protein ID	Family	Sequence
Ga0186112_110132	Ga0186112_1101321	F020015	QDAVWELMVSPSPYSAVVSPDIGDKRRTQMMQAAVCTALALAAVVCVGLVVHERGSGAVGREELGGAYYAVAKPPAFNFNRFIRHAWVYDGRAADPDMTNFVQHVARKHHYKLQIHHLTSFRDNAFRAALFSENIHCIVFPPLVHFPGVSELAAKDLCGYVSAGNNAVFIGSYNWLSVMNDVFGFQLMSDYKDGPYYRNDRNVRGTPFQWSMNRLQQPDGSVYGVKVDSIPMDGKCMFDTMGACVVFYIKYNLGTVTYIAFDYDTPYGIDHWDQILHAGMMM
Ga0186112_111950	Ga0186112_1119501	F010032	RSVAMVSSRTLNTVSCAAALMCLALAVVHVRSSRPSTLFQESAVVPQQTTELSWLQTSSFVDQIYMYAGLAVDNKHETGFIAKEIRKHNYQTVVRLFTSLDDATVRAVLWDQSVHCLVWPPLVRYPGISETAKTDLRAYAAAGNNVVFLGNYVAVQFMNDVFGFQLTDDYQNGPYYRNDRNVRNTPFQYLPSRIEQASIETYAVKTRSLPPGGKSMLDTLGATVAFAVRYDMGTVCYVGYNYNTPFHADQWTRVLHSAIDM
Ga0186112_113239	Ga0186112_1132391	F082776	RRFIVMVATYGSMPEGAPARQPRSGRRAALISIAALAMVGCIALTTLSARAEDPTGMDTLAAWKAQESARPTMLVSENDAANPSGGVLENVPATVVAPVPGPPDFNGASAVVARLPNIGFAPSLLTEKGFETRGSFTVRKSRAGESFYLRVYGKLNHNIRCTLRGYRNLSGDFTGNTIYTGFKKIYNGKSQVQTGHVPRGIVGEFDIMTCRDLGNGEVQYFRIRYS
Ga0186112_113261	Ga0186112_1132611	F020015	GGGQTEGQVAMGGAYYAVTKPPAFNFNRFIENAWIYDGRSADSGTEGFIEHMAKRHHYKLNIHRLQSLRDNEVRAALFSKSIHCIIFPPLTHFPGLSELAKKDLRGYVSSGNNAVFIGSYEWLSIMNDAFGFRLMSDYKEGPFYRNDRNVRGTPFQWSMSRIQQPDASVYAAKVDSLPLDGKCMFDTMGACVVFYVKYNLGTVTYIGFDYDTPYGIEHWDQILHAAMMM