3300017089: Metatranscriptome of marine eukaryotic communities from unknown location in L/25 medium, at 18 C, 32 psu salinity and 473 ?mol photons light - Gephyrocapsa oceanica RCC 1303 (MMETSP1364)

Overview

Basic Information

• IMG/M Taxon OID: 3300017089
• GOLD Reference (Study | Sequencing Project | Analysis Project): Gs0128947 | Gp0211817 | Ga0186105
• Sample Name: Metatranscriptome of marine eukaryotic communities from unknown location in L/25 medium, at 18 C, 32 psu salinity and 473 ?mol photons light - Gephyrocapsa oceanica RCC 1303 (MMETSP1364)
• Sequencing Status: Permanent Draft
• Sequencing Center: National Center for Genome Resources
• Published?: N
• Use Policy: Open

Dataset Contents

• Total Genome Size: 31742680
• Sequencing Scaffolds: 6
• Novel Protein Genes: 7
• Associated Families: 7

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
All Organisms → cellular organisms → Eukaryota → Haptista → Haptophyta → Prymnesiophyceae → Isochrysidales → Noelaerhabdaceae → Emiliania → Emiliania huxleyi	2
All Organisms → cellular organisms → Eukaryota	1
Not Available	2
All Organisms → cellular organisms → Eukaryota → Haptista → Haptophyta → Prymnesiophyceae → Phaeocystales → Phaeocystaceae → Phaeocystis → Phaeocystis antarctica	1

Ecosystem and Geography

Ecosystem Assignment (GOLD)

• Name: The Marine Microbial Eukaryote Meta/transcriptome Sequencing Project (mmetsp)
• Type: Host-Associated
• Taxonomy: Host-Associated → Human → Digestive System → Large Intestine → Fecal → Host-Associated → The Marine Microbial Eukaryote Meta/transcriptome Sequencing Project (mmetsp)

Alternative Ecosystem Assignments

• Environment Ontology (ENVO): marine biome → marine water body → sea water
• Earth Microbiome Project Ontology (EMPO): Free-living → Saline → Water (saline)

Location Information

• Coordinates
  • Lat. (^o): N/A
  • Long. (^o): N/A
  • Alt. (m): N/A
  • Depth (m): N/A

Associated Families

Family	Category	Number of Sequences	3D Structure?
F009840	Metagenome / Metatranscriptome	312	Y
F012191	Metagenome / Metatranscriptome	282	Y
F049399	Metagenome / Metatranscriptome	146	Y
F080844	Metagenome / Metatranscriptome	114	N
F088199	Metatranscriptome	109	N
F096482	Metagenome / Metatranscriptome	104	Y
F098706	Metagenome / Metatranscriptome	103	N

Associated Scaffolds

Scaffold	Taxonomy	Length
Ga0186105_100488	All Organisms → cellular organisms → Eukaryota → Haptista → Haptophyta → Prymnesiophyceae → Isochrysidales → Noelaerhabdaceae → Emiliania → Emiliania huxleyi	2989
Ga0186105_108341	All Organisms → cellular organisms → Eukaryota	1203
Ga0186105_109741	All Organisms → cellular organisms → Eukaryota → Haptista → Haptophyta → Prymnesiophyceae → Isochrysidales → Noelaerhabdaceae → Emiliania → Emiliania huxleyi	1105
Ga0186105_117312	Not Available	735
Ga0186105_120278	All Organisms → cellular organisms → Eukaryota → Haptista → Haptophyta → Prymnesiophyceae → Phaeocystales → Phaeocystaceae → Phaeocystis → Phaeocystis antarctica	615
Ga0186105_121179	Not Available	582

Sequences

Scaffold ID	Protein ID	Family	Sequence
Ga0186105_100488	Ga0186105_1004882	F012191	MLARTSAVAKLGQRTAARGMGAGMGGGGHANNPCFTFQADWAKNKWKGYTFAIGVWTLGTAIPYYCCWFAQRKAGVEWV
Ga0186105_108341	Ga0186105_1083411	F098706	MLSLSANRAEISTGNLRGDAGKFDNLKASWEKGLEIGDFKTKVAAKYDYNSNKDFLKEVSFSGDLVEGDSADDVSVSYELRRDFASKRSDVRLTASSQGTTLSAEYDTEDQLTEVAVQREVDLGDQKVDVQPSWMVKAKAARVKLMSGLNNGKDKVSAQFDYDVDGKEVGALEVGFTRQLKAGQTLAASYKPDKSDLEVSLQDDNFEDGATWTATANVPLESADANLLDAARVTLKRSWG
Ga0186105_109741	Ga0186105_1097411	F049399	VLSFSEIPAEFADFVAAKQRQLAFNMLSSSAVGVVCANLAALVAGDASVELLVQTSQAQIPLLVLTLIASILSGKVENKPW
Ga0186105_116224	Ga0186105_1162242	F080844	VPFLVGAVTTRLTVTVPSGISGGELVRVAAPDGSYHSVMVPAGLSAGQQFSVELLANPSDGCTGEMHKLRVELEAERHLRRETQQEAIRTRQALEALAQKRRADHALLHEMLRRQRRCIDHLTAQLGAA
Ga0186105_117312	Ga0186105_1173121	F009840	APWAELIEFSMRARRSYLSWLLLCSFRGTSALHLPSRPGVSRRPLLQHALALGALAPGAATAAAEKKPSLKEVVAQIDAGTPKAERNAQGEKADHFPQIAFEGGQGQGKKVVFTVPHQNLSPPSFSYIEYMWIKDEESGAILTARKFRPSDPDLVITAFGSSGQRLTAASKDDKFGIWQGTFRVP
Ga0186105_120278	Ga0186105_1202781	F096482	LNMHIVVFLSAQSFQPLLRPASPLPAARLSPPSCMARWTQQDMRAKRARLPPEVDGLLSADTPRESTEALWAALRACYANEASAVAAATRNTGTILPYLNSPSNIYGCYDVLVGMLGTEGARDVCSKNPGILQCNPRTLALEEPSSIVAAAEQVDFFERGVLGRLPPALRQNLDKVAFMLLAVPIAKRLADCAGQTCGL
Ga0186105_121179	Ga0186105_1211791	F088199	EIHMRCLVLFCARCWRGSALVVAPPAAVSSSARVAAGPVMACNGGKGGNGGKNPPKDKTVYRPKLSKLIQRADSAENVKSVLLTAQTEAMLLKMNWKYRRAAAHQVRKRAAQFGVEVPGNFAAFNVRPRNAKKHLLVPSM