3300017061: Metatranscriptome of marine eukaryotic communities from unknown location in MLH medium with 10g/L glucose, double vitamins, at 27 C, 30 psu salinity and 658 ?mol photons light - Crypthecodinium cohnii Seligo (MMETSP0323_2)

Overview

Basic Information

• IMG/M Taxon OID: 3300017061
• GOLD Reference (Study | Sequencing Project | Analysis Project): Gs0128947 | Gp0211789 | Ga0186077
• Sample Name: Metatranscriptome of marine eukaryotic communities from unknown location in MLH medium with 10g/L glucose, double vitamins, at 27 C, 30 psu salinity and 658 ?mol photons light - Crypthecodinium cohnii Seligo (MMETSP0323_2)
• Sequencing Status: Permanent Draft
• Sequencing Center: National Center for Genome Resources
• Published?: N
• Use Policy: Open

Dataset Contents

• Total Genome Size: 19241266
• Sequencing Scaffolds: 21
• Novel Protein Genes: 26
• Associated Families: 24

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
All Organisms → cellular organisms → Eukaryota → Sar	9
All Organisms → cellular organisms → Eukaryota → Sar → Alveolata → Dinophyceae	5
All Organisms → cellular organisms → Eukaryota → Sar → Alveolata → Dinophyceae → Peridiniales → Endodiniaceae → Brandtodinium → Brandtodinium nutricula	1
All Organisms → cellular organisms → Eukaryota → Sar → Stramenopiles → Ochrophyta → Chrysophyceae → Chromulinales → Chromulinaceae → Spumella → Spumella elongata	4
All Organisms → cellular organisms → Eukaryota → Sar → Alveolata → Perkinsozoa → Perkinsea → Perkinsida → Perkinsidae → Perkinsus → Perkinsus marinus	1
All Organisms → cellular organisms → Eukaryota → Sar → Alveolata → Dinophyceae → Gonyaulacales → Pyrocystaceae → Alexandrium	1

Ecosystem and Geography

Ecosystem Assignment (GOLD)

• Name: The Marine Microbial Eukaryote Meta/transcriptome Sequencing Project (mmetsp)
• Type: Host-Associated
• Taxonomy: Host-Associated → Human → Digestive System → Large Intestine → Fecal → Host-Associated → The Marine Microbial Eukaryote Meta/transcriptome Sequencing Project (mmetsp)

Alternative Ecosystem Assignments

• Environment Ontology (ENVO): marine biome → marine water body → sea water
• Earth Microbiome Project Ontology (EMPO): Free-living → Saline → Water (saline)

Location Information

• Coordinates
  • Lat. (^o): N/A
  • Long. (^o): N/A
  • Alt. (m): N/A
  • Depth (m): N/A

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000007	Metagenome / Metatranscriptome	8691	Y
F000076	Metatranscriptome	2620	Y
F000085	Metagenome / Metatranscriptome	2467	Y
F000326	Metagenome / Metatranscriptome	1295	Y
F000342	Metatranscriptome	1262	Y
F000631	Metagenome / Metatranscriptome	971	Y
F000665	Metagenome / Metatranscriptome	949	Y
F001154	Metatranscriptome	763	Y
F001618	Metagenome / Metatranscriptome	662	Y
F003249	Metatranscriptome	497	Y
F006386	Metatranscriptome	374	Y
F008230	Metatranscriptome	336	Y
F011080	Metatranscriptome	295	Y
F016530	Metatranscriptome	246	Y
F018723	Metagenome / Metatranscriptome	233	Y
F033310	Metatranscriptome	177	Y
F035313	Metatranscriptome	172	Y
F036711	Metagenome / Metatranscriptome	169	Y
F054880	Metatranscriptome	139	Y
F067800	Metagenome / Metatranscriptome	125	Y
F075673	Metatranscriptome	118	Y
F079552	Metatranscriptome	115	Y
F079569	Metagenome / Metatranscriptome	115	Y
F082720	Metatranscriptome	113	Y

Associated Scaffolds

Scaffold	Taxonomy	Length
Ga0186077_101991	All Organisms → cellular organisms → Eukaryota → Sar	1159
Ga0186077_103121	All Organisms → cellular organisms → Eukaryota → Sar → Alveolata → Dinophyceae	1020
Ga0186077_103425	All Organisms → cellular organisms → Eukaryota → Sar → Alveolata → Dinophyceae	991
Ga0186077_103636	All Organisms → cellular organisms → Eukaryota → Sar → Alveolata → Dinophyceae → Peridiniales → Endodiniaceae → Brandtodinium → Brandtodinium nutricula	970
Ga0186077_104098	All Organisms → cellular organisms → Eukaryota → Sar → Alveolata → Dinophyceae	929
Ga0186077_104668	All Organisms → cellular organisms → Eukaryota → Sar → Stramenopiles → Ochrophyta → Chrysophyceae → Chromulinales → Chromulinaceae → Spumella → Spumella elongata	887
Ga0186077_105229	All Organisms → cellular organisms → Eukaryota → Sar	849
Ga0186077_105792	All Organisms → cellular organisms → Eukaryota → Sar	813
Ga0186077_106356	All Organisms → cellular organisms → Eukaryota → Sar → Alveolata → Perkinsozoa → Perkinsea → Perkinsida → Perkinsidae → Perkinsus → Perkinsus marinus	781
Ga0186077_106502	All Organisms → cellular organisms → Eukaryota → Sar	773
Ga0186077_106767	All Organisms → cellular organisms → Eukaryota → Sar → Stramenopiles → Ochrophyta → Chrysophyceae → Chromulinales → Chromulinaceae → Spumella → Spumella elongata	757
Ga0186077_107284	All Organisms → cellular organisms → Eukaryota → Sar → Stramenopiles → Ochrophyta → Chrysophyceae → Chromulinales → Chromulinaceae → Spumella → Spumella elongata	729
Ga0186077_107359	All Organisms → cellular organisms → Eukaryota → Sar → Alveolata → Dinophyceae	726
Ga0186077_107980	All Organisms → cellular organisms → Eukaryota → Sar	698
Ga0186077_108636	All Organisms → cellular organisms → Eukaryota → Sar	669
Ga0186077_108933	All Organisms → cellular organisms → Eukaryota → Sar	656
Ga0186077_109967	All Organisms → cellular organisms → Eukaryota → Sar → Alveolata → Dinophyceae → Gonyaulacales → Pyrocystaceae → Alexandrium	616
Ga0186077_111915	All Organisms → cellular organisms → Eukaryota → Sar	551
Ga0186077_112927	All Organisms → cellular organisms → Eukaryota → Sar → Stramenopiles → Ochrophyta → Chrysophyceae → Chromulinales → Chromulinaceae → Spumella → Spumella elongata	520
Ga0186077_113424	All Organisms → cellular organisms → Eukaryota → Sar → Alveolata → Dinophyceae	506
Ga0186077_113615	All Organisms → cellular organisms → Eukaryota → Sar	501

Sequences

Scaffold ID	Protein ID	Family	Sequence
Ga0186077_101991	Ga0186077_1019911	F000342	MAAPYGSMGDPMGMEAKAPGSVFTPGKRRRMNLVAICGNIFVPWFVFSGIFGGMSFSLHYQKPVLAWLLVLVGLALTGVSGFLAQKTKQVEREEMWYTFSTVALLIATVTAAVFGDMNFWYNMQPFYDIENLNTYPSVNPAREKGQQLMDAGRVYFADGAGLDMRKAMGFKNLDLYCVAPIVHGEDQLASYDFWAVGVNCCSGVSSDFRCGEFNNPHARSGLRLMRDDQRPFFRLAVQQAEAAYNIKATHPLFFYWMQDPVAEMNAYRDDGFKYYLLGIFTHFAFNVFCVVAAVVGFSKIGRL
Ga0186077_103121	Ga0186077_1031211	F011080	VAEMKADLQRLRKPTAKCLEEIFQRYHQACLSTSPQMKEIEVKEPDVNWKALVMSLPPPHNKIVLGVGIRKILLAETECIYQGMYRFHVVRLDGSRAMFDFREAYNDAYHNYKDKSFKHDVELALRAAVLHQLVQHKEMLSKDSQMELVSHISGVVLPWEKAVVQHFPVTFQMLVDSFLNEHQLHMEEIKLDFCEDHGYRIKDQDLLDKWRIFHRSKAHYRVISTEEAMEQDHL
Ga0186077_103425	Ga0186077_1034251	F033310	VVQIARRDMPKGEEVFLWPGRLSNSEMVVRHGMSFQRNPIGIGRNITQPPNWNDNPSSKVRLEYEKYNCSTLEAFELRFSPLGTPSKSFVRCYRISWFLVNGWYSPGLQSRRRELDKWPPPKKYSKDDWLSWTQADAEVNRVILEYCRDMRGRLKDMLDSATAEDFRKSKDPLDKLIWKLRSEESKTFKECINAARAIS
Ga0186077_103636	Ga0186077_1036361	F082720	LSKADGVGFVFSPKLPCAKNIQRIVSIFVNQSGRICMRIFADIIRASAYVKPLELGDWVEMAIDLEGRVATFNIWANTENGWPDMVGKPVSTAVFPYGQRLGKLDPEHRPEGAKTGKSSHKPIKLNVGHLACVVKNVGVTINLAS
Ga0186077_104098	Ga0186077_1040981	F075673	KFRGSLLAGLYAGSGGLWVRNFFWNITFFEWKRFFHNSIDQLPEWAPSLYCRHIMWLRGLDVKDQANILTFEAATLATYLTFFNMAGDNVKTKMSVDPQRYPTFIGTCKDIWASHGVVGFARGSLFKGIYLILGATVAIGIQERLSAIMASFVGR
Ga0186077_104668	Ga0186077_1046682	F016530	ATVALPEDAWDMLGLSLPDGISEKSLSVKNGQVVLLTAGDWFSSQTSLEVDKRDAYRQQWQYEAEARLARVEAKKSPLEKSGEGLTAQKFSWSKDGQKPFEWRKLYHALVGGVGGLPDGGIITETVFNPTVMRMYTDHRVMGNIVLPGVSHVSLMAATGSVGFPNPGGISSEWHMSIKETLFERPYIVNSGAELIAAIQSGADPSQVGGMTPVGVPVVYCRATTVTKERGQIKPTIDWAK
Ga0186077_105076	Ga0186077_1050761	F000076	MAEEEGQEVIFTENAAPDREIWDEKGGLIKKGAAEIAERDQDHVPEVKVLTTLGMFAVPVVAETTIGEIRQKVQEWKPEYSLEQIELVCKDKDAWGPLFNKTSRPRDDDETVESLWSDWDIPRRMMQVALWIKEKNEETGEWESTFWKMLEESKCDDWSFQGHTI
Ga0186077_105229	Ga0186077_1052291	F036711	MPVWQNVNLKQKAIFEIIQREPVETLPYYLNDEELDFFVRGLSMGPHAKTYLPQIVEREKRPIYICRGYAPPTYSRVVKLRYYGPDPLLKDAGSNWSAGEPGELLEVVIGWRWLYAYWDGPLVDEVDGAWNEKQWPSIANPSWSWTSVKIVTPPYYVPEDGRPWRASNPALLPVSVPKGKGRGKGGSGSGMLDTTASEANPKVGCRTEDEWSQNKNN
Ga0186077_105792	Ga0186077_1057922	F035313	KQRALVVSYQLLLVLTASCRVFPKVVDMADVPAGYVNGCGHEFDPKEAEKSGKLTKDDPIQEHYKKGGFFGSITGAFGDKKTMYCHHMTTDCEPAVRAAKRQNIDCKTAEEVWNVIGRKPCCGRFAYDSKSGKLKCGAVVKKDHDNTCNGDTCLFVASGLDCPVPTWAHK
Ga0186077_106356	Ga0186077_1063561	F008230	WLLLDFLFNHTVRSPCKPAPKPPRFVKMAMRMTRRLLSVPAVKDFATYEAMKTSGTTMMVGFFNAHFSTAGKMYQSQFESMAASYPKAKFYTCDIDDVPMAAYDAEVTEVPSIVMLPLGLKPDGSPYDKSDMVVVAPELARFDQVLPRAKSVIDGTTVIENPEGQKPWEFDPATGTTMPPHQ
Ga0186077_106502	Ga0186077_1065021	F000665	SNPQFKGLENSLGAVYYNFPHSGAIQGFFDGHPVVNWRHENLMRLFFRALRSFMKPGGIVKVASNMNAVGVRYSYIIGSAVENEFIHFETMPFLEWHLHRYGRSYGDKRDIYKRPDAQKNQSYNAQAADRDMVYCFVYQPTGEQLPPQFVRLPPSLKTLSGCPDGPFKNLQGAAKLATAKQLHQRFVTEISGTHVG
Ga0186077_106667	Ga0186077_1066671	F000085	LPKPMAAPLALLLMLLPGGQGQNWPACQEQNTVIRNAGRALFANMQGFGAVVGCFQDDCQNSDKFVASSIESCTKVCLSIPECEFWVWGQEEGEQKCWLRLGDDGREAGEGWVSGARTCHPPNQQAQVMGNVECWIDGFDYDTCCDPKFGPSGNTQCWDGVFNYERCCFPRDEL
Ga0186077_106767	Ga0186077_1067672	F000631	MKMRTLSVVAVVLSALSVDAAQLRARATQEPDTACGKGFENLVQGSQDYYRTAAVELFKHPLHTMDNATFEQEFECWFASMCTTKCGGLPPLAEQRKKSLTDMCSNVADDWLKIWNLFTQEEVKWFKANYPSAPVEDAESDNKIFYKQAMETAKEVNKKEVLCLTLFTIDDECVKWPYIRLSK
Ga0186077_107284	Ga0186077_1072841	F000631	LISRSASSYPQLTMQLFLSTFLAVVAGLIYAGEAALLRAKTAQEPDTACGKGFENLVQGSQDYYRTAAVELFKHPLHTMDNATFEQEFECWFASMCTTKCGGLPSLAESRKKDLTATCSSVEADWLKVWNFFTQEEVKWFKTNYPAAEVEGSEEGTAIYYKQAMQTAKEINKKEMLCLTLFTIDDECVKWPYIRLSK
Ga0186077_107359	Ga0186077_1073591	F018723	KTEQSAAQRSFDLAMASKADPKAKAKGKEPLCEIFPVKDVFPLFQDRKTKQLPLNDVPYVLRACGLTIYGEEEAKIKAEVEKVDGMGKPVSLSTLQDWMENNQASYTRTHEEAYNALWTLCQEGIIGEVKDKSQTIIIPHLRHLVSEVGDKIKPDTFDKVIKGDNTITSDAINLDDFINYLKK
Ga0186077_107980	Ga0186077_1079801	F001618	MWRPDPGPCVARVEDWGDHPDDVEYMQTLKAMPKRIMKRRELVIKNTDLEKAVKKQGRVNFSVACWELSEYSKSSGLGSDAASIIHVFYESKDERKVLNAFSGAGVDLEKAEAVPVDPSSSNRHEQEIMYSQECLFIKDDCLYEEGPPLSPEELKRRFGM
Ga0186077_108248	Ga0186077_1082481	F000076	HLLPSLLDPTLKRWGEPITASSLHGAADAMAEEEGQEVIFTENAAPDREIWDEKGGLIKKGAAEIAERDQDHVPEVKVLTTLGMFAVPVVAETTIGEIRQKVQEWKPEYSLEQIELVCKDKDAWGPLFNKTSRPRDDDETVESLWSDWDIPRRMMQVALWIKEKNEETGEWESTFWKMLEESKCDDWSFQGHTI
Ga0186077_108636	Ga0186077_1086361	F003249	MFRLTVISTIAALGAFSAAEGKALLNIAKKSEWTPEPCEELEPGKPCAKLYEHPQGSTTVMPCPVESHTNADGCAALFGGKGDGEQCPQITCPKALGVTMKLVCTGGCCPTCWAPDHVIGLDRHKALENPAVVDPAPQAPTTCGGVRCFEPVCAEGQKKGHVEGDCCYSCVPGR
Ga0186077_108933	Ga0186077_1089331	F054880	KDGTPTFFEVPLSSTKYYLSIYATESSAYTLTVLADIGAFPRPGAAGKIEASQLRELQVQLSWSPASFIPTGISNVKKYWVYSSMLLDNDDRSNMAVFLRPDKIMNTVCGLTNNTDREYTTVLPSSCGTTCNVTVDGVITDKRYVFNVIVESARGYKMAYAGLIMKTDWEVVRQATSDKTLKVIGAVSGSVLGMVVIIYFLMLKLYG
Ga0186077_109967	Ga0186077_1099671	F079552	SRNWSLTSCSHFDFLSHPPLLASFPWIRVEEMKFAAVVLLALVADAAAGTLKAKTAEKYPVYSPGAAGSVETCEGITCQPVDCKPPFKYQSPEESGTCCPLCWADSVKVPEDRSWAKGMTGGVGMNNNADPILCRDVVCLAPDCPEYDQFFDGRCCTKCKSSKAVTPADLAKDFKEMK
Ga0186077_110200	Ga0186077_1102001	F000007	MGSTSKFLFALCNLAVITLVAGRANPKKDLAKEMMHDLEMNFNKIAPFGKEDTAKELQDHAAKTQDTLVDAVENAEVAEIKRAVFRALTRLRAATIKEFDTIARLETQAIDAYNDAHHYRAENPLAHLHEDEAPVETDKLKSFH
Ga0186077_111915	Ga0186077_1119151	F001154	MVRVIIGKPEDPWCEIELTEEDVEDWKKGVDIAEEKLKEVLQLPPITIENCHEREDGDLQWDEITFDEEVNGKYWHALIMALHRIREEFIKKQRKMKHLDWYLTMKQTSDKRNAKYYI
Ga0186077_111959	Ga0186077_1119591	F000326	ELANQQAYGELKAAKEDEIKAGQAQIDSKTGELADTDEKNAQAKVDVDDTKASLSADEQFLSMLKEKCSMADKEWEERQKTRQLEMEAVSQALAVLSGDDAHDLFTRTFNPSFLQSSSSSDASKDFRASASQVLAAVAAKYSNPKLGALAYQVKLDAFTRVKKAIDDMVAQLLKEKDDEIKHK
Ga0186077_112927	Ga0186077_1129271	F006386	GANDTGGVFAILWWLNFPDSGPGGKCDKAFYNKWLPVRVKHVVFVLSLWTLVWLLGSWGLDRPLIDGWKFTFMVSAFFRLGFALAWIFIANVNHCHMWNEFLARDPERTWPVLHACMAFALGGRHRWNEMLFHDVHHMCPGRIGAMSQRGRFHGWQKVHDACVEILANGLWK
Ga0186077_113424	Ga0186077_1134241	F067800	MSVPNMANVFMPAVGGLVGLWAASKIVPVMYHWDLIPGVGSPAYWERAKKIRYDYYSEGIVYSPYDTGDPIKELPAESVGKMYLRQKGGGWKLQSEM
Ga0186077_113615	Ga0186077_1136151	F079569	GIKFFEWENPKDLSKYQKMTSAQVDAALKGSNFLTKWVD