3300017040: Metatranscriptome of marine eukaryotic communities from Ross Sea in L1 medium with NH4Cl, 4 C, 32 psu salinity and 517 ?mol photons light - Synedropsis cf. recta CCMP 1620 (MMETSP1176)

Overview

Basic Information

• IMG/M Taxon OID: 3300017040
• GOLD Reference (Study | Sequencing Project | Analysis Project): Gs0128947 | Gp0211966 | Ga0186254
• Sample Name: Metatranscriptome of marine eukaryotic communities from Ross Sea in L1 medium with NH4Cl, 4 C, 32 psu salinity and 517 ?mol photons light - Synedropsis cf. recta CCMP 1620 (MMETSP1176)
• Sequencing Status: Permanent Draft
• Sequencing Center: National Center for Genome Resources
• Published?: N
• Use Policy: Open

Dataset Contents

• Total Genome Size: 22615853
• Sequencing Scaffolds: 3
• Novel Protein Genes: 4
• Associated Families: 4

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
All Organisms → cellular organisms → Eukaryota → Sar → Stramenopiles → Ochrophyta → Bacillariophyta → Bacillariophyceae → Bacillariophycidae → Naviculales → Naviculaceae → Fistulifera → Fistulifera solaris	1
All Organisms → cellular organisms → Eukaryota → Sar → Stramenopiles → Ochrophyta → Bacillariophyta → Coscinodiscophyceae → Rhizosoleniophycidae → Rhizosoleniales → Rhizosoleniaceae → Proboscia → Proboscia inermis	1
All Organisms → cellular organisms → Eukaryota → Sar → Stramenopiles → Ochrophyta → Bacillariophyta	1

Ecosystem and Geography

Ecosystem Assignment (GOLD)

• Name: The Marine Microbial Eukaryote Meta/transcriptome Sequencing Project (mmetsp)
• Type: Host-Associated
• Taxonomy: Host-Associated → Human → Digestive System → Large Intestine → Fecal → Host-Associated → The Marine Microbial Eukaryote Meta/transcriptome Sequencing Project (mmetsp)

Alternative Ecosystem Assignments

• Environment Ontology (ENVO): marine biome → marine water body → sea water
• Earth Microbiome Project Ontology (EMPO): Free-living → Saline → Water (saline)

Location Information

• Location: Ross Sea
• Coordinates
  • Lat. (^o): -77.8333
  • Long. (^o): 163.0
  • Alt. (m): N/A
  • Depth (m): N/A

Associated Families

Family	Category	Number of Sequences	3D Structure?
F015298	Metagenome / Metatranscriptome	255	Y
F051162	Metagenome / Metatranscriptome	144	Y
F075465	Metagenome / Metatranscriptome	119	Y
F100304	Metagenome / Metatranscriptome	102	Y

Associated Scaffolds

Scaffold	Taxonomy	Length
Ga0186254_111002	All Organisms → cellular organisms → Eukaryota → Sar → Stramenopiles → Ochrophyta → Bacillariophyta → Bacillariophyceae → Bacillariophycidae → Naviculales → Naviculaceae → Fistulifera → Fistulifera solaris	806
Ga0186254_112402	All Organisms → cellular organisms → Eukaryota → Sar → Stramenopiles → Ochrophyta → Bacillariophyta → Coscinodiscophyceae → Rhizosoleniophycidae → Rhizosoleniales → Rhizosoleniaceae → Proboscia → Proboscia inermis	687
Ga0186254_114185	All Organisms → cellular organisms → Eukaryota → Sar → Stramenopiles → Ochrophyta → Bacillariophyta	547

Sequences

Scaffold ID	Protein ID	Family	Sequence
Ga0186254_106647	Ga0186254_1066471	F100304	MKTAAFGLLVAGLSAANAIELTPDNWEASVAGKTVLIKFQAPW
Ga0186254_111002	Ga0186254_1110021	F075465	GVFDQQMDIPIVLTDSEKTQHNSEWRTYRERVNNLIKHRGQAFSLIHGQCTQMLQDRMKQDIGWDTVSVSYKPILLYKLIEKTILSQTEDQYPFATVYDQEHGFYSFRQETMTNPQWYERFNTKIDVGEAIGVTRQHKVLLEYVAKEVHRSDYDSLGVDDKKTVRADAEERYISYAFLRQSGKQHGILKTNLQNDFTTGDDHYPKTRQQTLHLLDKYSKTVVTKAIGSEGTSFAQNDKQGDDRGSDSFDVKYWKNKECFKCNKKGHPA
Ga0186254_112402	Ga0186254_1124021	F015298	NQTHDRQRKNDQTRSNQQTMNGILEYLIAHKDWLLLVCFSVDAVNTLISFPLIMWKGPKWLLKSTDPDAKEKVEDADAKAVVDLTDTDRKSFEVLWEIFGICYEGYFGFTISTLICLFKVPETRPIFAYSLFALYLYKARAFLTTIKTDNPQGKGKLISILFFYWPCYGGYCLLHSIENYFL
Ga0186254_114185	Ga0186254_1141851	F051162	MPLVKIFAKTTMMKTIPLAALQSKLCDIWGTKPNTTKLMLQRVDEWTDESFAEDVYVDIRAKGTDERTREYVLEGMHRVQDAFKSEDLIANVRLETYEGPRYFHLPPPASGSS