3300017014: Metatranscriptome of marine eukaryotic communities from Arabian Sea in L1 medium, 20 C, 32 psu salinity and 531 ?mol photons light - unclassified eukaryote CCMP 2000 (MMETSP1178)

Overview

Basic Information

• IMG/M Taxon OID: 3300017014
• GOLD Reference (Study | Sequencing Project | Analysis Project): Gs0128947 | Gp0212305 | Ga0186593
• Sample Name: Metatranscriptome of marine eukaryotic communities from Arabian Sea in L1 medium, 20 C, 32 psu salinity and 531 ?mol photons light - unclassified eukaryote CCMP 2000 (MMETSP1178)
• Sequencing Status: Permanent Draft
• Sequencing Center: National Center for Genome Resources
• Published?: N
• Use Policy: Open

Dataset Contents

• Total Genome Size: 14302310
• Sequencing Scaffolds: 26
• Novel Protein Genes: 30
• Associated Families: 29

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
All Organisms → cellular organisms → Eukaryota → Haptista	4
All Organisms → cellular organisms → Eukaryota → Sar → Stramenopiles → Ochrophyta → Pelagophyceae → Pelagomonadales → Aureococcus → Aureococcus anophagefferens	1
All Organisms → cellular organisms → Eukaryota → Sar → Stramenopiles → Ochrophyta → Dictyochophyceae → Florenciellales → Florenciella → Florenciella parvula	1
All Organisms → cellular organisms → Eukaryota → Haptista → Haptophyta → Prymnesiophyceae → Phaeocystales → Phaeocystaceae → Phaeocystis → Phaeocystis antarctica	5
All Organisms → cellular organisms → Eukaryota	1
Not Available	6
All Organisms → cellular organisms → Eukaryota → Viridiplantae → Streptophyta → Streptophytina → Embryophyta → Bryophyta → Bryophytina → Bryopsida → Funariidae → Funariales → Funariaceae → Physcomitrium → Physcomitrium patens	1
All Organisms → cellular organisms → Eukaryota → Haptista → Haptophyta → Prymnesiophyceae → Prymnesiales → Chrysochromulinaceae → Chrysochromulina → Chrysochromulina tobinii	2
All Organisms → cellular organisms → Eukaryota → Haptista → Haptophyta → Prymnesiophyceae → Prymnesiales → Prymnesiaceae → Prymnesium → Prymnesium polylepis	1
All Organisms → cellular organisms → Eukaryota → Haptista → Haptophyta → Prymnesiophyceae → Isochrysidales → Noelaerhabdaceae → Emiliania → Emiliania huxleyi	2
All Organisms → cellular organisms → Eukaryota → Discoba → Heterolobosea → Tetramitia → Eutetramitia → Vahlkampfiidae → Naegleria → Naegleria gruberi	1
All Organisms → cellular organisms → Eukaryota → Viridiplantae → Chlorophyta → core chlorophytes → Chlorophyceae → CS clade → Chlamydomonadales → Chlamydomonadaceae → Chlamydomonas → Chlamydomonas reinhardtii	1

Ecosystem and Geography

Ecosystem Assignment (GOLD)

• Name: The Marine Microbial Eukaryote Meta/transcriptome Sequencing Project (mmetsp)
• Type: Host-Associated
• Taxonomy: Host-Associated → Human → Digestive System → Large Intestine → Fecal → Host-Associated → The Marine Microbial Eukaryote Meta/transcriptome Sequencing Project (mmetsp)

Alternative Ecosystem Assignments

• Environment Ontology (ENVO): marine biome → marine water body → sea water
• Earth Microbiome Project Ontology (EMPO): Free-living → Saline → Water (saline)

Location Information

• Location: Arabian Sea
• Coordinates
  • Lat. (^o): 14.449
  • Long. (^o): 64.9997
  • Alt. (m): N/A
  • Depth (m): N/A

Associated Families

Family	Category	Number of Sequences	3D Structure?
F009840	Metagenome / Metatranscriptome	312	Y
F010660	Metatranscriptome	300	Y
F012191	Metagenome / Metatranscriptome	282	Y
F015559	Metagenome / Metatranscriptome	253	Y
F024007	Metagenome / Metatranscriptome	207	Y
F024700	Metagenome / Metatranscriptome	204	Y
F027998	Metagenome / Metatranscriptome	193	Y
F036921	Metagenome / Metatranscriptome	169	N
F040437	Metagenome / Metatranscriptome	161	N
F047692	Metagenome / Metatranscriptome	149	N
F052327	Metagenome / Metatranscriptome	142	N
F053739	Metagenome / Metatranscriptome	140	N
F057085	Metagenome / Metatranscriptome	136	N
F060579	Metatranscriptome	132	N
F066367	Metatranscriptome	126	N
F074299	Metagenome / Metatranscriptome	119	N
F074300	Metagenome / Metatranscriptome	119	N
F083576	Metagenome / Metatranscriptome	112	N
F083577	Metatranscriptome	112	N
F085082	Metatranscriptome	111	N
F086477	Metagenome / Metatranscriptome	110	N
F091179	Metatranscriptome	107	N
F093091	Metatranscriptome	106	N
F093100	Metagenome / Metatranscriptome	106	N
F094782	Metagenome / Metatranscriptome	105	N
F096457	Metatranscriptome	104	N
F098439	Metatranscriptome	103	N
F100300	Metagenome / Metatranscriptome	102	N
F102200	Metagenome / Metatranscriptome	101	N

Associated Scaffolds

Scaffold	Taxonomy	Length
Ga0186593_102256	All Organisms → cellular organisms → Eukaryota → Haptista	1152
Ga0186593_102669	All Organisms → cellular organisms → Eukaryota → Sar → Stramenopiles → Ochrophyta → Pelagophyceae → Pelagomonadales → Aureococcus → Aureococcus anophagefferens	1088
Ga0186593_102984	All Organisms → cellular organisms → Eukaryota → Sar → Stramenopiles → Ochrophyta → Dictyochophyceae → Florenciellales → Florenciella → Florenciella parvula	1045
Ga0186593_103251	All Organisms → cellular organisms → Eukaryota → Haptista → Haptophyta → Prymnesiophyceae → Phaeocystales → Phaeocystaceae → Phaeocystis → Phaeocystis antarctica	1013
Ga0186593_103443	All Organisms → cellular organisms → Eukaryota	994
Ga0186593_103868	Not Available	955
Ga0186593_103968	All Organisms → cellular organisms → Eukaryota → Viridiplantae → Streptophyta → Streptophytina → Embryophyta → Bryophyta → Bryophytina → Bryopsida → Funariidae → Funariales → Funariaceae → Physcomitrium → Physcomitrium patens	945
Ga0186593_104154	All Organisms → cellular organisms → Eukaryota → Haptista → Haptophyta → Prymnesiophyceae → Prymnesiales → Chrysochromulinaceae → Chrysochromulina → Chrysochromulina tobinii	929
Ga0186593_104246	All Organisms → cellular organisms → Eukaryota → Haptista → Haptophyta → Prymnesiophyceae → Phaeocystales → Phaeocystaceae → Phaeocystis → Phaeocystis antarctica	921
Ga0186593_104410	All Organisms → cellular organisms → Eukaryota → Haptista → Haptophyta → Prymnesiophyceae → Prymnesiales → Prymnesiaceae → Prymnesium → Prymnesium polylepis	908
Ga0186593_105172	All Organisms → cellular organisms → Eukaryota → Haptista → Haptophyta → Prymnesiophyceae → Phaeocystales → Phaeocystaceae → Phaeocystis → Phaeocystis antarctica	847
Ga0186593_105288	Not Available	840
Ga0186593_105370	Not Available	834
Ga0186593_105603	All Organisms → cellular organisms → Eukaryota → Haptista → Haptophyta → Prymnesiophyceae → Prymnesiales → Chrysochromulinaceae → Chrysochromulina → Chrysochromulina tobinii	818
Ga0186593_106244	Not Available	780
Ga0186593_106618	All Organisms → cellular organisms → Eukaryota → Haptista → Haptophyta → Prymnesiophyceae → Phaeocystales → Phaeocystaceae → Phaeocystis → Phaeocystis antarctica	758
Ga0186593_106878	All Organisms → cellular organisms → Eukaryota → Haptista → Haptophyta → Prymnesiophyceae → Isochrysidales → Noelaerhabdaceae → Emiliania → Emiliania huxleyi	743
Ga0186593_107238	All Organisms → cellular organisms → Eukaryota → Discoba → Heterolobosea → Tetramitia → Eutetramitia → Vahlkampfiidae → Naegleria → Naegleria gruberi	718
Ga0186593_107241	All Organisms → cellular organisms → Eukaryota → Haptista	718
Ga0186593_107739	All Organisms → cellular organisms → Eukaryota → Haptista	685
Ga0186593_107968	All Organisms → cellular organisms → Eukaryota → Viridiplantae → Chlorophyta → core chlorophytes → Chlorophyceae → CS clade → Chlamydomonadales → Chlamydomonadaceae → Chlamydomonas → Chlamydomonas reinhardtii	670
Ga0186593_108228	All Organisms → cellular organisms → Eukaryota → Haptista → Haptophyta → Prymnesiophyceae → Phaeocystales → Phaeocystaceae → Phaeocystis → Phaeocystis antarctica	654
Ga0186593_108275	Not Available	651
Ga0186593_108819	All Organisms → cellular organisms → Eukaryota → Haptista	618
Ga0186593_109136	All Organisms → cellular organisms → Eukaryota → Haptista → Haptophyta → Prymnesiophyceae → Isochrysidales → Noelaerhabdaceae → Emiliania → Emiliania huxleyi	599
Ga0186593_110155	Not Available	539

Sequences

Scaffold ID	Protein ID	Family	Sequence
Ga0186593_102256	Ga0186593_1022561	F027998	GFFFYDRTILSEELTNTNAAEIGITTITTANTTLLKNALNEGVILITNLIF
Ga0186593_102669	Ga0186593_1026691	F098439	QPVEMLRSFVLLVAPLVIVAKKGDAPPPAPSGVEEFVNELKGCGSDVLAALMGAASDVAGYLLALPRFATDLFVWCVQFLRDLPGLGNNVFNGDQKTLDQLASFCVTVGSICFVMYISVAAVNMALQTLCSTKEYFKDYLELPAMKTVFGVEVPKPLTQVRNAVQKEVLDRIISWKFSFVMPLSGERGPPSTSAMIGNSAAAISLCMMLACAPAVLALMQNGPNKGDAEALAYTMGTALGIQYLVGKTKA
Ga0186593_102984	Ga0186593_1029841	F102200	MVSANGATIACGAVAAISILAALPMLTGDSGVIPESLKKGTSMDKKGKLKAMDPDLLVHFARTLGHELVVFVTAIAASVANNRCALLAKFLACGMLLSAGWHHAWGNKNEVIGQVVFATAIGYFGFISSGETIPATKWGKHAIACTLLAALMGAVALSLLSGSGLALPTALETLNLGAEQAIGKDVGLSALCTLAGALDNNSPTLCKILPVGLMVAAWSHAMMDDVQGAVLDSCIALGFAILGFGFAAPETGGKKAQ
Ga0186593_103251	Ga0186593_1032511	F074300	KNQASLKAGGWRSKSRWLLFQMGLFSSHILPTLLAGIKYMLTKLTFPLALFGFFTPTPAPIEAGGPVDKPHPHLPRALNQMVGRWKLQEKINVDQFMAGLGINGAKRAALRLAGQEYELLADTSALTIVTSDLRGRSALKLPLGGRGVVAHDGDDGAAVRRAAYVHKDAVVVTETLVGESQPLSICSRTLQSDGRMRIDISKRTPDGRTVAMAAIASRCRPPPSLRLQC
Ga0186593_103443	Ga0186593_1034431	F093091	ARLPTTMARGSNPLERTSVQLMLGVALIALCANSAVDRTDDGLPWEVTLGGFCVFAVIFSAVYAKRTEVALGICSILFVLMPTYHVHNSEVPFKNWLLGSVAPMGAPKGDVLKAVWSNSPNTSKVDEMLGLRSVGLSLMHFSMFNPGIALSINTSEVYHSGLKLDDPLTKERTHDYLLFTSPRKVRRRTESIALLARVPTKFDVWPKDIEDYEFSLQTAANIVAPPTFTGELVKLDKGRAIDAMKNKHNLRPFLLDVYNVEYKYD
Ga0186593_103868	Ga0186593_1038681	F100300	RMPTALLLVLLSLLADADAFVHTRPCIRLSVTRPFHGAARPLSRAVVRLAEEGESLTDAFASFVNQGKKLKPGEGAAARTDVKGLPIGKGGDTRDTSLGAIRAALQNWEVLKDPRNWQAEEFGLVGALGLIAAAIVWGYFTYVSPPEAMPAGPSRAVMVREAKIAECNGDAACEQKAIESTEEAIQLQKDLERCLYSAFSGSEKRMCQMKYGGKSVLGFF
Ga0186593_103968	Ga0186593_1039681	F036921	PSLPRSRSRSGAALDAMGTSAGFFGITCQGPVNGLASLTLSIFNMDHPNDRAWLKKVFDTVVGPDGEMMTSDHVSDFLVCFYRARSEGPTQSGGHVPLYPNNEWQFISELCAAGPISFHTLLDALQEAQANFVEPEAPLEYNSNAVMCNDKVKHTRKVLGPQQQFRKPLTTSQEVGWELGATVPGDLRLLEVGKHPFHLRTSATTQFSDAQEKHTWGRSIGGEFSAYASHKLLEFGGFGIGI
Ga0186593_104154	Ga0186593_1041541	F015559	SRCPLRRFEHGARTFVMSHKWGTSTKVGDAFPNVAVDIGFAGLDPNNRKMSGDLNKGQKTLWVSLPGAFTPT
Ga0186593_104246	Ga0186593_1042461	F052327	TDFCFPIMPEASLEKEFSQVGTMARPAGVPGGLGSSNLGSEYYGKMLKKGTDRGAHALQTASPYAERAEPGWAPKEATVRPSWSDKGAGTVSAGCIDNTYMPAPLKNKWGKQREMSAQEVVVLPHKQATDLLAVTLGTQMPLPKETIEDMPSVREPYSKTIPLFHPIDPMRAEAGFIRGPNIIPGAAPPPISPLHNAPPIQMVPEDWKLRKLEYEKEQKGLGRIPVLKKVSDEATRGAVGPHASFLRKPAGLPGGLSLIPVKP
Ga0186593_104410	Ga0186593_1044101	F086477	MVAEGLGEGLAKPEEVSLKWRRDKLGDGIQLDADCTSVSRRCRNGWGVQLADAWLTKDITTIAIECHELNEDAYIGLVGRNYNPEDWSGKLSESKHGIVLHTATGRITHKGSGTSFVLRKLHPGARLVLTVDMQKRELTFELKASGADDAKAFSNAEAPSESTLVVEDIQAEVALAVCLGPGDQRLRLAGCVRSKPEMTLLGKRVKDFWDEENVVPPLALNVRSDDDPQSQNRKMQENLKAVAGFLE
Ga0186593_104943	Ga0186593_1049431	F083576	GQLQLFAMALARSKLSVWLKVFISITLVASACGFRAAPALRGAAHGRVPAATITMQLWAGKKKSRYEDDGSRLQGADAIGSVDEKLKGGWFSDFKFGTEVEVAVPKDKKKKKAMRGMAADNSDRGLSGNTAYRNTESARFGSYEGQKIRKAKLEAYINSEEEASDGTFGKIISGSALVSIFGSLIAAYLYYGGDGLMAATAKQRALSGMDGGSRQAGAEVCMTTDCMDEPGAL
Ga0186593_105172	Ga0186593_1051721	F094782	FIKSRTSQAAMRLNPPTMSASARLALSLSMATLVTRDNPLVCTPLAETRAKAELAQKQSMVELGFARRLYVPPPRPATRIAAEDANWQEMGLANAVRITEPAAARVISLPLTNERGLSKPKRLTFPPLGDAVQRVLQPGASPGRVFKPAITPQPSSEGRALAKWLRR
Ga0186593_105288	Ga0186593_1052881	F009840	RLGSGSEVARKRMHGTLRTLRILAMLSSAVALAPSRLCLSPSRPRVSRRPILQQALALGLLLPSASSAAEKRPNLKEVVAQLDANTSKEERNAAGDKADHFPKIAFEGGQGQGKKVVFTVPHENLSPPDFSYIEFMWIKDERSGAILTARKFRPSDPDLVITAFGSSGQKLTAASKDNKFGIWQGTFVVP
Ga0186593_105370	Ga0186593_1053702	F096457	QRHARMAKGSSSLPAPVRAIVGVLTLALRAAQLVVATGLIYFIVCQGTMLAKEQKVIKKVPTFVNEGPHCGFVAEQGWSKEYPALGCHKRAFALRDLVKLAPALKWTPTDLAAMAEKRSPYGVSDFLAIFTSRDSLI
Ga0186593_105603	Ga0186593_1056032	F074299	CLERRDVGGGATSAAMDIADMRAVRQASSSLQNDVANLRRRIENSAFQDAEPDAKVWSFQGCSGRRVLVDRRNPEKFDTSNARYTASSWRVGSRSTEINPVTGTHSYDTGNLYRTVHWRDVNNGFGLNGYFTNDLARAGMWKNDGLNTSQTRSKTVANPSNWGTPKHQPTFM
Ga0186593_106244	Ga0186593_1062441	F047692	MHGGEGSQEERFKSHCDWIAGVRAQYQRQMQAAGEDSPDWLRLADTQPLHERFSDAMEFGDFEPPVYRSIGSAVSTVGSVDTDFDEPVYRSVVQLGDRASGSADVEDFEAVSSPVAVTTSTTVEAEWMRSMPPLVKRQRAFKF
Ga0186593_106618	Ga0186593_1066181	F053739	FYDLARTDRWHSMRAPRLLVATFLVAAAEGRVRIPTSERPTVADSIDMRVPWRSNYLRDHQVVGIIRPHGGERRFSKAANGFVGSEPFSRGLVWIVRREFKPLKRIRRKRPFKVRLLHMDPAAILGKLAAEEQIDIDPFEVPSGEYKGKLAVAVSLRKPKPWYRRLL
Ga0186593_106878	Ga0186593_1068781	F040437	ADDQVKEGTAEFYRRRFESSVMGQHAMMPDLALSKHFKSSEEPAPFPSGPNTSFLDPTPMPARFMEASLVEHNLRHVNAKPQNPTYSTSASEVGRLPLQAADFPIRWYGLRGEFTTAFFLGGKGPSSKVNTGLNSAMDRSDFHITFDQGWSGHLGLRDHNIPSLNAASFLGKPARSWRDIGR
Ga0186593_107238	Ga0186593_1072381	F024700	STLRVWPWLCAEGDPFCAMPRAVSSAQKNSMYESMDLMGIISTLESHWVVLDAELSEIRKDFAALRTLTRKYGEFWNRSLTQLKKARTQKENLLKEIKFQMELFNLHIQQGRDLCSKLSVVASHIKTAPAQLQSQLAIEVVSPILANSSNPLSTAR
Ga0186593_107241	Ga0186593_1072411	F083577	MRMPTRLLVLLACLLANADAQSSKSAKSRGKLAGKTPSTTVVGKLRLAMLTWYCAETSGHVDDRPCQNFHFMQKLRKAEDPETRKRLVQERSATMPKDDAGRKKLAMQSREGYLKMYKAYCAQPSPANPAVCTNESLKKVYENMEKSIKQSTNAA
Ga0186593_107739	Ga0186593_1077391	F024007	FLGTPLFMAKPASSAPEKNDGGIVVALVLLIAALCAVFFSAIVLYASATDVVLSKEKKEKVVPARRLARLLAGWANVGNAVVHALLVIMLLTDSARYKVYFPEAEMPIGPIILGVVNGFVGYKTLNGGGIQTALGWNTFVALAGSLMPIVWPKFLDVGMSTWPYLSIFLWLGIYAFESTAFFFSTVAFSLKHVNVKEA
Ga0186593_107968	Ga0186593_1079681	F093100	RYQDDPSRGKSASVRPFNAKPRLKNPEDDAVIAMARDRHKKELQIEKQRHIMSGASGAVLHKILELKQLEADIRAIEEGVKEYQDQVDLMNDRKKDIGKIVKVEQAWCDNFNKLIGPFETKYEESKAEVKGSFDFAKTKYKDSLQTLIDDFGFHPAFKRWFDEF
Ga0186593_108228	Ga0186593_1082281	F091179	TPCWGFSDLRAMLSLVASSLSLNVGGPALTVSRAPAASMVAALETKFVYERPAPIGTTSGEEYPNTALHAPKLEGVFGKVVPTGKLAKSPKFLQQDFLFGTPKRPEVYFAQCTPASMGENRRSWQAYHAPF
Ga0186593_108275	Ga0186593_1082752	F066367	AATDRRPDRPTVRDSTQQRTMATPQGMPPPKTFGDLSEAKAAMRKVLEVLVAHQAELQELITECGDDQQKKMTSLIPKLQKVLAGPMEEAGFPPPPMGIMQGVMAFTQAQTMEGGECIKDGVDMLKAAMMGNFPSDEQLADIKAKLE
Ga0186593_108819	Ga0186593_1088191	F010660	MLHRVLCLLALCSSASALIAGPMAAHATQQRVAASPMMACNGGKGGRGGEGPPKDKMRRGQIKALIQAADSAEKVNAILLSSQTERLLLNMNWKVRSSAQRNLRKRATQFGVDVPLDFGAFNVRPRNTPKAQLKPTVLTESAPHPDAVAALANLRFA
Ga0186593_109136	Ga0186593_1091361	F057085	MGRGGDLEAKVRKVLPKDEQIVLAMIGFYASIYGVVKVAKMAGGKAPEPEKSPLAAAVATATGGSVGKFGFEPPTLDSFDAWSENADNWKKWEEFISGPKLDLWVEGKL
Ga0186593_109217	Ga0186593_1092171	F060579	MLGLLAAACSFNAPMTNVGQSAVVARTDVSMNTKYTVAAGLAKKKNPKTGDSKSLWGYTVGSRAPDTARASGTTKSEQSLLDKLTGKASTPDVKGKVQKTRRI
Ga0186593_110155	Ga0186593_1101551	F085082	DTPLAPKPSHQPHMLKVLVLLLSAGHATALMPTTRLQVQNLKHARATPLQMSDVKGPKDWAFIKGTDASGREYTYMYLDAKKGAAPERNRLAEAIGQEENPFAFILEPYFILLFAPFALVMAIEFDHILKFGRF
Ga0186593_110232	Ga0186593_1102321	F012191	ALPLLLSSRKMAAGVLRSSALAQMASRAASRGMGAGMGGGGHANNPAFMFQADYAKNKWKPALFVGICTAVGCGIPWFSVKFAQRKAGVEW
Ga0186593_110408	Ga0186593_1104081	F012191	LLSSRKMAAGVLRSSALAQMASRAASRGMGAGMGGGGHANNPAFMFQADYAKNKWKPALFVGICTAVGCGIPWFSVKFAQRKAGVEW