3300016978: Metatranscriptome of marine eukaryotic communities from Mediterranean Sea in f/2 medium, 20 C, 36 psu salinity and 297 ?mol photons light - Pseudo-nitzschia arenysensis B593 (MMETSP0329)

Overview

Basic Information

• IMG/M Taxon OID: 3300016978
• GOLD Reference (Study | Sequencing Project | Analysis Project): Gs0128947 | Gp0212106 | Ga0186394
• Sample Name: Metatranscriptome of marine eukaryotic communities from Mediterranean Sea in f/2 medium, 20 C, 36 psu salinity and 297 ?mol photons light - Pseudo-nitzschia arenysensis B593 (MMETSP0329)
• Sequencing Status: Permanent Draft
• Sequencing Center: National Center for Genome Resources
• Published?: N
• Use Policy: Open

Dataset Contents

• Total Genome Size: 26199916
• Sequencing Scaffolds: 7
• Novel Protein Genes: 8
• Associated Families: 8

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
All Organisms → cellular organisms → Eukaryota → Sar → Stramenopiles → Ochrophyta → Bacillariophyta → Bacillariophyceae → Bacillariophycidae → Bacillariales → Bacillariaceae → Pseudo-nitzschia → Pseudo-nitzschia arenysensis	1
All Organisms → cellular organisms → Eukaryota → Sar → Stramenopiles → Ochrophyta → Bacillariophyta → Bacillariophyceae → Bacillariophycidae → Bacillariales → Bacillariaceae → Fragilariopsis → Fragilariopsis cylindrus → Fragilariopsis cylindrus CCMP1102	2
All Organisms → cellular organisms → Eukaryota → Sar → Stramenopiles → Ochrophyta → Bacillariophyta	2
All Organisms → cellular organisms → Eukaryota → Sar → Stramenopiles → Ochrophyta → Bacillariophyta → Bacillariophyceae → Bacillariophycidae → Bacillariales → Bacillariaceae → Pseudo-nitzschia	1
All Organisms → cellular organisms → Eukaryota → Sar → Stramenopiles → Ochrophyta → Bacillariophyta → Bacillariophyceae → Bacillariophycidae → Bacillariales → Bacillariaceae → Pseudo-nitzschia → Pseudo-nitzschia australis	1

Ecosystem and Geography

Ecosystem Assignment (GOLD)

• Name: The Marine Microbial Eukaryote Meta/transcriptome Sequencing Project (mmetsp)
• Type: Host-Associated
• Taxonomy: Host-Associated → Human → Digestive System → Large Intestine → Fecal → Host-Associated → The Marine Microbial Eukaryote Meta/transcriptome Sequencing Project (mmetsp)

Alternative Ecosystem Assignments

• Environment Ontology (ENVO): marine biome → marine water body → surface water
• Earth Microbiome Project Ontology (EMPO): Free-living → Saline → Water (saline)

Location Information

• Location: Mediterranean Sea
• Coordinates
  • Lat. (^o): 40.8083
  • Long. (^o): 14.25
  • Alt. (m): N/A
  • Depth (m): N/A

Associated Families

Family	Category	Number of Sequences	3D Structure?
F015298	Metagenome / Metatranscriptome	255	Y
F023270	Metagenome / Metatranscriptome	210	Y
F045520	Metagenome / Metatranscriptome	152	Y
F056296	Metagenome / Metatranscriptome	137	Y
F056297	Metagenome / Metatranscriptome	137	Y
F075635	Metatranscriptome	118	Y
F081743	Metagenome / Metatranscriptome	114	Y
F102464	Metagenome / Metatranscriptome	101	Y

Associated Scaffolds

Scaffold	Taxonomy	Length
Ga0186394_102607	All Organisms → cellular organisms → Eukaryota → Sar → Stramenopiles → Ochrophyta → Bacillariophyta → Bacillariophyceae → Bacillariophycidae → Bacillariales → Bacillariaceae → Pseudo-nitzschia → Pseudo-nitzschia arenysensis	2533
Ga0186394_104284	All Organisms → cellular organisms → Eukaryota → Sar → Stramenopiles → Ochrophyta → Bacillariophyta → Bacillariophyceae → Bacillariophycidae → Bacillariales → Bacillariaceae → Fragilariopsis → Fragilariopsis cylindrus → Fragilariopsis cylindrus CCMP1102	2008
Ga0186394_104644	All Organisms → cellular organisms → Eukaryota → Sar → Stramenopiles → Ochrophyta → Bacillariophyta	1931
Ga0186394_110135	All Organisms → cellular organisms → Eukaryota → Sar → Stramenopiles → Ochrophyta → Bacillariophyta → Bacillariophyceae → Bacillariophycidae → Bacillariales → Bacillariaceae → Pseudo-nitzschia	1038
Ga0186394_111869	All Organisms → cellular organisms → Eukaryota → Sar → Stramenopiles → Ochrophyta → Bacillariophyta → Bacillariophyceae → Bacillariophycidae → Bacillariales → Bacillariaceae → Fragilariopsis → Fragilariopsis cylindrus → Fragilariopsis cylindrus CCMP1102	796
Ga0186394_112196	All Organisms → cellular organisms → Eukaryota → Sar → Stramenopiles → Ochrophyta → Bacillariophyta	742
Ga0186394_113122	All Organisms → cellular organisms → Eukaryota → Sar → Stramenopiles → Ochrophyta → Bacillariophyta → Bacillariophyceae → Bacillariophycidae → Bacillariales → Bacillariaceae → Pseudo-nitzschia → Pseudo-nitzschia australis	595

Sequences

Scaffold ID	Protein ID	Family	Sequence
Ga0186394_102607	Ga0186394_1026071	F056297	MGLISKFFPISVPLPRPPVPAGKTRICVSGFGISHHTGRARTIAAEIAEAYPDEYETWYYFDTRGFRPAFLEPIKAEIKESGGSLPENHASSPFVWLETQGASKKEMVGIGGRDMLCDWTKEKFDANDPKNAKFLPLCDEEPPRKFSVICFDNTTPGTAKTSA
Ga0186394_104284	Ga0186394_1042842	F045520	MAFNRLYKHIESLIQTDDDVGDSIPCKADILSVRECRKGGKACDELGLDLLRCMAQFKVDETEKIRTSIGVAKYNEYVKEMEDKHGKEKAAEMINEPTEQLKDIEAYQVLHRIANDKHPKGPPKTKDDLMKWSYADQVRLEMGEGEWWDALKIIGYEFGLAKTDALFGLKKENDLINSAQTRLIPGFDEKKASAMSAAKKIEESVKEAAPGGKTASDFAAAFNDLYPTKADLDAAL
Ga0186394_104644	Ga0186394_1046441	F081743	MEWNLPDPLWLDIDNPKFGKMAELGRIVRVGFVQDVPFLYFNRRFKGSDHPFYKAVYEKAVKIDKGLADMMDTCIIK
Ga0186394_109229	Ga0186394_1092292	F056296	MKTIISILLSLMAVANAVELTPDNFEELTAGKTVFIKFQAPW
Ga0186394_110135	Ga0186394_1101351	F023270	VHHQPPPCDFAHRIPPEHIIAQQPQQFKIPRLNISTMVYSRCRNSLVAALVLAVMTMTTNTIHISSVEAKNAHFTMEFIPTFKNGLPHRCKPEEVKVMETFLGDILAKETGMVEHSVEYLDRMYDPSEGSQVSGVAAHMKKHHFAKVRGFDFTFDCPLQEGHYSCPDNDWCHVLCLDESVKPGHESLTEQASHLKERLHQHAKTLEGPYNVKCLGHTPDLDFHLLISVSP
Ga0186394_111869	Ga0186394_1118692	F075635	EKQESLVLIIVTKDISYVKTKYKIKMASKPTAEISSGDADYVSYDQKPKLGHVFCGVCCDVRTACLVVNIVSLAFAGLGLVSLAPQMDRPGFERFGILMAAFVLGIVCNAVGLYGALKFKKMFTLIAAIWFGIEAILSLVMFMDFVGFSIAVLFLYPHVVFYKELQEGIMSRENYAHEKNCCNSCF
Ga0186394_112196	Ga0186394_1121961	F015298	KRNGRILNRFKVYHYYVLDHKLKNQTNAKMSMINGMLGYMIAHKDWLLLGCFSVDAINTMISFPLIMYNGPKWVLKSTEPDAKEKIEDAEEAKKVVDLSDCDRKSFEVLWEIFGVCYEGYFGFTISTLICLFQAPETRPIFAYSLFALYLYKAKAFFTTFRTDNVQGKSKLMTILYFYWPCYGGYCLLHMLEKYLS
Ga0186394_113122	Ga0186394_1131221	F102464	ILPPKKKQSPEDRAKDVEGVLNWMRTNSISPTEVEESTPGRFDKLSSIPINRRSPEDRQKDVDDITDWIRQGKPSEPGTPADEFQRVDQILPPKKKQSPEDRAKDVEGVLNWMRTNNVSPTSPEDFTPSKFNKVPIVPVKIRSPEDRQKDVEDITSWIRQGKPSKPGTPAEEFQTIDQMLPPKTKQSPEDRAKDVESV