3300016943: Metatranscriptome of marine eukaryotic communities from Pacific Ocean in f/2 medium, 13 C, 21 psu salinity and 100 ?mol photons light - Pseudo-nitzschia pungens cf. cingulata (MMETSP1060)

Overview

Basic Information

• IMG/M Taxon OID: 3300016943
• GOLD Reference (Study | Sequencing Project | Analysis Project): Gs0128947 | Gp0212017 | Ga0186305
• Sample Name: Metatranscriptome of marine eukaryotic communities from Pacific Ocean in f/2 medium, 13 C, 21 psu salinity and 100 ?mol photons light - Pseudo-nitzschia pungens cf. cingulata (MMETSP1060)
• Sequencing Status: Permanent Draft
• Sequencing Center: National Center for Genome Resources
• Published?: N
• Use Policy: Open

Dataset Contents

• Total Genome Size: 31921501
• Sequencing Scaffolds: 5
• Novel Protein Genes: 7
• Associated Families: 7

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
All Organisms → cellular organisms → Eukaryota → Sar → Stramenopiles → Ochrophyta → Bacillariophyta → Bacillariophyceae → Bacillariophycidae → Bacillariales → Bacillariaceae → Fragilariopsis → Fragilariopsis cylindrus → Fragilariopsis cylindrus CCMP1102	1
All Organisms → cellular organisms → Eukaryota → Sar → Stramenopiles → Ochrophyta → Bacillariophyta → Bacillariophyceae → Bacillariophycidae → Bacillariales → Bacillariaceae → Pseudo-nitzschia	1
All Organisms → cellular organisms → Eukaryota → Sar → Stramenopiles → Ochrophyta → Bacillariophyta → Coscinodiscophyceae → Thalassiosirophycidae → Thalassiosirales → Thalassiosiraceae → Thalassiosira → Thalassiosira pseudonana	1
All Organisms → cellular organisms → Eukaryota	1
All Organisms → cellular organisms → Eukaryota → Sar → Stramenopiles → Ochrophyta → Bacillariophyta	1

Ecosystem and Geography

Ecosystem Assignment (GOLD)

• Name: The Marine Microbial Eukaryote Meta/transcriptome Sequencing Project (mmetsp)
• Type: Host-Associated
• Taxonomy: Host-Associated → Human → Digestive System → Large Intestine → Fecal → Host-Associated → The Marine Microbial Eukaryote Meta/transcriptome Sequencing Project (mmetsp)

Alternative Ecosystem Assignments

• Environment Ontology (ENVO): marine biome → marine water body → sea water
• Earth Microbiome Project Ontology (EMPO): Free-living → Saline → Water (saline)

Location Information

• Location: Pacific Ocean
• Coordinates
  • Lat. (^o): 47.6901
  • Long. (^o): -122.40041
  • Alt. (m): N/A
  • Depth (m): N/A

Associated Families

Family	Category	Number of Sequences	3D Structure?
F023270	Metagenome / Metatranscriptome	210	Y
F045520	Metagenome / Metatranscriptome	152	Y
F056296	Metagenome / Metatranscriptome	137	Y
F069652	Metagenome / Metatranscriptome	123	Y
F080841	Metagenome / Metatranscriptome	114	Y
F089930	Metagenome / Metatranscriptome	108	Y
F098604	Metagenome / Metatranscriptome	103	Y

Associated Scaffolds

Scaffold	Taxonomy	Length
Ga0186305_105058	All Organisms → cellular organisms → Eukaryota → Sar → Stramenopiles → Ochrophyta → Bacillariophyta → Bacillariophyceae → Bacillariophycidae → Bacillariales → Bacillariaceae → Fragilariopsis → Fragilariopsis cylindrus → Fragilariopsis cylindrus CCMP1102	2187
Ga0186305_105730	All Organisms → cellular organisms → Eukaryota → Sar → Stramenopiles → Ochrophyta → Bacillariophyta → Bacillariophyceae → Bacillariophycidae → Bacillariales → Bacillariaceae → Pseudo-nitzschia	2023
Ga0186305_108297	All Organisms → cellular organisms → Eukaryota → Sar → Stramenopiles → Ochrophyta → Bacillariophyta → Coscinodiscophyceae → Thalassiosirophycidae → Thalassiosirales → Thalassiosiraceae → Thalassiosira → Thalassiosira pseudonana	1451
Ga0186305_109283	All Organisms → cellular organisms → Eukaryota	1276
Ga0186305_111829	All Organisms → cellular organisms → Eukaryota → Sar → Stramenopiles → Ochrophyta → Bacillariophyta	857

Sequences

Scaffold ID	Protein ID	Family	Sequence
Ga0186305_100651	Ga0186305_1006512	F069652	VSSLYCSARFHVFNSPLARAFFALFGTIQACNMGAAMTECMAEAFSKDLNARPVALLVITAGKPDDSDALDECLRGTVQHCAENYETCPISVTFVHIGDDADAEEYLKYLDDGIQAECAANGETFDLVDTVKDEDIKAAMAEIKGTQSSGKNGALLGAIAGAALGVGGMYLVNKQQAKKRTEGWNGKWKVTYDGEEITTLDIVDDKEGNLTIDGFPDSEPTTGTYTTDDEEEYAISFVDPNGDWEIEGTVEDEHSIVWSDGTRWDEIPPEGASFGALAAAGIGGAAAAGATGYLLDKKFFNKAAKKDQCDYFILMDRSASMAVIDNSVGL
Ga0186305_105058	Ga0186305_1050581	F045520	MAFNKLFKHIEGLIQNDDEVNDSVPCKADILTVRECRKGGKACDDLGLDLLRCMAQFKVDATEKVRTTIGVSKYYEYLKEMEDKHGKEKAAEIINEPSEQLKDIEAYQVLHRIANNTHPKGAPKTKDDLMNWTYADQVRLEMGEGDWSDAVKIIGYEFGLAKTDALFGLKRENDMIHSAQSRLIPGFEDRKASALAAAKKIEDSVKEAAPGGKTAADFKAAFDDLYPSKDDLEAALK
Ga0186305_105730	Ga0186305_1057302	F023270	MISMPTSPSASSWKSSAMAIFGMLQLLLATSVGFVQARNAHFTMEFIPTFKNGLPHKCRPEEVKIIEKFLGDILAEETGMVEHSVQYLDNMYDAAEHHNSEASAASFHLKRHHFSKVRGFDFTFDCPTQNDHYACPDKDWCHVLCLDESVKPGHESLTQQASKLKEKLHRHSKTLEGPYNVKCLGHTAELDFHLLVSVSP
Ga0186305_108297	Ga0186305_1082971	F080841	LQSTILLHTMFKISCASLLAAIFFVIGNALTITYYVKEYQRSHFDYDDYTNLDPGYIEVEWGFRIINRPLYLSAGILNVIAWFFLMFPIVHLSWILSQGGKKWIGLHIAIGVLILTGSLTEWISHVLYIGASMTSELLAREFNLDNWITSNSEDQIGWRTLEMTHIVTYGFVSAIGAIEWLILSVVMVLIHISVKRWRRNVDSTTFSACWNALGLFVALMSMLEFTAEVLRLSGFRSFAKIAFWYSSANRLILIPTWLVLLGSRLPYASLKLNQQAHMREQEPLVGTT
Ga0186305_109283	Ga0186305_1092831	F056296	MKSIISILLTLFAVSNAVELTLDNYDELTAGKTIFVKFLAPW
Ga0186305_111322	Ga0186305_1113221	F098604	MAPLIHDVDFSLASHENTIEQPKTIFAPLHENSIATSRRVSFGVMVATYEVMNLEDYTSDEKKATWFDSNDMRRMKESVRSEAKLAESGLLVQGDDVSLRGLESRTRDGLKRKRRNRMNAYAAVFFEIDCQDQEGFIDEELIADAYFTHTEHCSMTAQMIGKRDEKEAMEIFQTQKKDFFGKNFHDTLVRLSTTEGFLASSAA
Ga0186305_111829	Ga0186305_1118291	F089930	ANKTALEPLSMHDILEVKAGCSGYDHTELPSAAGRSKSKDGKRKSENRQGSLFITLTATPTPMAATRSYILRFKSRSARNEFLNGMRCVMADMQIHEGVSISGLQTSPETEEYDDDEEVMVPLGAVNNVMNSEREAYDRILLMLLQGYDDIKEREDELLKLRKKLENVMEESAEKDRVQANDSRLIMQLSKKLETLLMDNEDLRDQNDRLNTRLIAAECEKMNSQ