3300016942: Metatranscriptome of marine eukaryotic communities from Pacific Ocean in GSe medium with ammonium, 22 C, 32 psu salinity and 443 ?mol photons light - Pelagomonas calceolata CCMP 1756 (MMETSP0889)

Overview

Basic Information

• IMG/M Taxon OID: 3300016942
• GOLD Reference (Study | Sequencing Project | Analysis Project): Gs0128947 | Gp0212005 | Ga0186293
• Sample Name: Metatranscriptome of marine eukaryotic communities from Pacific Ocean in GSe medium with ammonium, 22 C, 32 psu salinity and 443 ?mol photons light - Pelagomonas calceolata CCMP 1756 (MMETSP0889)
• Sequencing Status: Permanent Draft
• Sequencing Center: National Center for Genome Resources
• Published?: N
• Use Policy: Open

Dataset Contents

• Total Genome Size: 22448723
• Sequencing Scaffolds: 8
• Novel Protein Genes: 8
• Associated Families: 8

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
All Organisms → cellular organisms → Eukaryota → Sar → Stramenopiles → Ochrophyta → Pelagophyceae → Pelagomonadales → Pelagomonas → Pelagomonas calceolata	8

Ecosystem and Geography

Ecosystem Assignment (GOLD)

• Name: The Marine Microbial Eukaryote Meta/transcriptome Sequencing Project (mmetsp)
• Type: Host-Associated
• Taxonomy: Host-Associated → Human → Digestive System → Large Intestine → Fecal → Host-Associated → The Marine Microbial Eukaryote Meta/transcriptome Sequencing Project (mmetsp)

Alternative Ecosystem Assignments

• Environment Ontology (ENVO): marine biome → marine water body → sea water
• Earth Microbiome Project Ontology (EMPO): Free-living → Saline → Water (saline)

Location Information

• Location: Pacific Ocean
• Coordinates
  • Lat. (^o): 30.8333
  • Long. (^o): -136.8333
  • Alt. (m): N/A
  • Depth (m): 5

Associated Families

Family	Category	Number of Sequences	3D Structure?
F006402	Metagenome / Metatranscriptome	374	Y
F017397	Metagenome / Metatranscriptome	241	N
F023863	Metagenome / Metatranscriptome	208	N
F064079	Metagenome / Metatranscriptome	129	Y
F075316	Metagenome / Metatranscriptome	119	N
F081388	Metagenome / Metatranscriptome	114	N
F093977	Metagenome / Metatranscriptome	106	N
F101226	Metagenome / Metatranscriptome	102	Y

Associated Scaffolds

Scaffold	Taxonomy	Length
Ga0186293_100147	All Organisms → cellular organisms → Eukaryota → Sar → Stramenopiles → Ochrophyta → Pelagophyceae → Pelagomonadales → Pelagomonas → Pelagomonas calceolata	6313
Ga0186293_102926	All Organisms → cellular organisms → Eukaryota → Sar → Stramenopiles → Ochrophyta → Pelagophyceae → Pelagomonadales → Pelagomonas → Pelagomonas calceolata	1869
Ga0186293_108435	All Organisms → cellular organisms → Eukaryota → Sar → Stramenopiles → Ochrophyta → Pelagophyceae → Pelagomonadales → Pelagomonas → Pelagomonas calceolata	972
Ga0186293_109288	All Organisms → cellular organisms → Eukaryota → Sar → Stramenopiles → Ochrophyta → Pelagophyceae → Pelagomonadales → Pelagomonas → Pelagomonas calceolata	889
Ga0186293_109463	All Organisms → cellular organisms → Eukaryota → Sar → Stramenopiles → Ochrophyta → Pelagophyceae → Pelagomonadales → Pelagomonas → Pelagomonas calceolata	871
Ga0186293_109975	All Organisms → cellular organisms → Eukaryota → Sar → Stramenopiles → Ochrophyta → Pelagophyceae → Pelagomonadales → Pelagomonas → Pelagomonas calceolata	819
Ga0186293_111914	All Organisms → cellular organisms → Eukaryota → Sar → Stramenopiles → Ochrophyta → Pelagophyceae → Pelagomonadales → Pelagomonas → Pelagomonas calceolata	650
Ga0186293_112140	All Organisms → cellular organisms → Eukaryota → Sar → Stramenopiles → Ochrophyta → Pelagophyceae → Pelagomonadales → Pelagomonas → Pelagomonas calceolata	631

Sequences

Scaffold ID	Protein ID	Family	Sequence
Ga0186293_100147	Ga0186293_1001471	F017397	VVPPGPDCLSQCINQIVAARPPLNHDIHAIDAIGSMAWPCGLPLLDSVSTAAFSPRKDLVKNYLNAPDSLISTQVGLISDPIFVCYGIYMVLMSVASFNNPRIGANLIMFENITYFFSSQTAYFWLAIPCVMTMAPDPSALTYDAVTLTIGGLWVEVHMNYIYGHIAAWAPLENNQAPDKLGLLRAQQMFFVTAPLHTLAIFQGTQDSWKILFAAKDASRWASFDSINAITTAKLWVLTMMVMLSSSIVVGLVRIGTAKKPFDEIERWLGVVMSFVFLSLTAVPSAAMFFHKSVTKAKAKPSLMDRCTAGVFGKALVITPSLFYMFLYSAAIVVLLALRGRARNAGF
Ga0186293_102926	Ga0186293_1029261	F093977	LAAVLHKNDVRLEACRIKWNQNISCRRREYVRAQTASIRQVTVIGLEPEVQRLIQKQKRDIIAQRTAQDLAWSAIRTKLSGKLFDQQVALRETMSRVHAQRDFNENIRIGQSITALQCEFQHRCTITSRAQSGRIEKLQAELQKKLHLDSAKFQRMHQNLCVTKRDRLRTRRDQLACVRDTVYQLQCFGSRIVAEARNSDHAVWIQATISHVNTISKESFSVRTEEVLRRRDTTIGNIIHHDQALTHTWELGIMHAADAYETSCKDYHCAIIARLQIQRTNWIKQTKILIREIQSLNQEVCALKAIGDKTKNRWHDMEMALAKPSYEAGSHAYKLLCTQTSRQQTHAQELYLLDDKCAAAELPIKAITTNIRRLVATYDFLQGQHHEFHQRALISKNKAVQCHLRDNANRLVRIVDKIGLETVRHNHLTKMLASYTRS
Ga0186293_108435	Ga0186293_1084351	F081388	HLSTDLPSKLKGSQPAHSPIDTMARPLLGALLLARLATAQDIDIKRIENPGVVLYKTSGPLPEARLGDDFPGSFPARFLRQAWGLEGPHSPEGAALVNATGVCTSSEITDEFFGQAMLERAKAMFDDRGLRHELDAFLQSGVSNTHSPTPRRMYWVGIDILPNQSLALHSHPNVEFVYVAAGVMHEWRCPKCPVKRKYIPEEIKTNGKTIEKYWGPDLHKVNAKARGMFRHDAYNAGDMFINAIGDVHQSYTEEEGVKLLVMWGDGNADVPLEQLPRHSDFLNVGAAKAWD
Ga0186293_109288	Ga0186293_1092881	F064079	DGTGADGPRSEGGRRILLDNSRVYVRFTPFSSGRFHTIRLSDSEHDHVLR
Ga0186293_109463	Ga0186293_1094631	F023863	LTSLLIERDRRRLAYSQDKSVAQQCKAVRCSTKSKRTTATIMARRCLLVLALTSLSAAQNPWVNRRKNKDKDAPVAADPAAGDTDFSKLNDMVKNLQQAGAAGGAGGEDMFAGMGDMWESLMDSPEMEEMLANPELLKATIKNNPLINAIPGASEQVEALLQSDAFNDPAQLKQAMRQGVDAMKAVGSEFGSQLGAQMKLAQQNPEAFKAQMEAMMSQLAGGPEQGRALMEAAKGLWDGSADPAQLEALSKLPGMEALADPEAMKRQMAELQKMMGAGQVPAMGGEL
Ga0186293_109975	Ga0186293_1099751	F101226	MLGLDRVGGFLEAIAALEPKRVKSDKFQYPKSLSDPDWDGSISINTYTDYSTLYGPFTVHSYHEEWDSGTDIYATDAETGKDLMTYIVQCMRASGRYRGDELFGTPDDDGAREDSEGLREMDEVEADYAGCLVRVGNAASTASRRVLPRRLGTFYRGNVARDHGDDTYDIVYYRYADGERVRETRVAE
Ga0186293_111914	Ga0186293_1119141	F075316	HPGGAEQCALALREVVEERAASLRTVSAPALLGRPIGSDYRSAARLQIGSMGLNWIRERRRSSDKEVVQRKKVVNPDTGETPAGYNKMLRDCARIALAGASATLLCGWPHVALVASAVAAGLLQQGTTYSIKNWKWTAVSWCLLPACLTAWFLRSTAGMIDPDRGYSIYIIFVMVGRFTEFAAGSTVAIFLAFALAAPPDKSGEAR
Ga0186293_112140	Ga0186293_1121401	F006402	MGSDETATATSGGPRVIGVFYWNGVPSGPNYLLFSDVDRLVNSLRDRSEVG