3300016849: Metatranscriptome of marine eukaryotic communities from Indian Ocean in L1 medium with seawater, 24 C, 33 psu salinity and 573 ?mol photons light - Bathycoccus prasinos RCC 716 (MMETSP1460)

Overview

Basic Information

• IMG/M Taxon OID: 3300016849
• GOLD Reference (Study | Sequencing Project | Analysis Project): Gs0128947 | Gp0212125 | Ga0186413
• Sample Name: Metatranscriptome of marine eukaryotic communities from Indian Ocean in L1 medium with seawater, 24 C, 33 psu salinity and 573 ?mol photons light - Bathycoccus prasinos RCC 716 (MMETSP1460)
• Sequencing Status: Permanent Draft
• Sequencing Center: National Center for Genome Resources
• Published?: N
• Use Policy: Open

Dataset Contents

• Total Genome Size: 13508201
• Sequencing Scaffolds: 13
• Novel Protein Genes: 13
• Associated Families: 13

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
All Organisms → cellular organisms → Eukaryota	2
All Organisms → cellular organisms → Eukaryota → Viridiplantae → Chlorophyta → Mamiellophyceae → Mamiellales → Bathycoccaceae → Bathycoccus → Bathycoccus prasinos	8
All Organisms → cellular organisms → Eukaryota → Viridiplantae	1
All Organisms → cellular organisms → Eukaryota → Viridiplantae → Chlorophyta → Mamiellophyceae → Mamiellales → Bathycoccaceae → Ostreococcus → unclassified Ostreococcus → Ostreococcus sp. 'lucimarinus'	1
Not Available	1

Ecosystem and Geography

Ecosystem Assignment (GOLD)

• Name: The Marine Microbial Eukaryote Meta/transcriptome Sequencing Project (mmetsp)
• Type: Host-Associated
• Taxonomy: Host-Associated → Human → Digestive System → Large Intestine → Fecal → Host-Associated → The Marine Microbial Eukaryote Meta/transcriptome Sequencing Project (mmetsp)

Alternative Ecosystem Assignments

• Environment Ontology (ENVO): marine biome → marine water body → sea water
• Earth Microbiome Project Ontology (EMPO): Free-living → Saline → Water (saline)

Location Information

• Location: Indian Ocean
• Coordinates
  • Lat. (^o): -14.483333
  • Long. (^o): 113.45
  • Alt. (m): N/A
  • Depth (m): 70

Associated Families

Family	Category	Number of Sequences	3D Structure?
F040116	Metagenome / Metatranscriptome	162	N
F043073	Metagenome / Metatranscriptome	157	N
F044280	Metagenome / Metatranscriptome	154	N
F057841	Metagenome / Metatranscriptome	135	N
F064084	Metagenome / Metatranscriptome	129	N
F064692	Metagenome / Metatranscriptome	128	N
F075610	Metagenome / Metatranscriptome	118	N
F082736	Metatranscriptome	113	N
F088834	Metagenome / Metatranscriptome	109	N
F089782	Metagenome / Metatranscriptome	108	N
F091243	Metagenome / Metatranscriptome	107	N
F102428	Metagenome / Metatranscriptome	101	N
F102591	Metatranscriptome	101	N

Associated Scaffolds

Scaffold	Taxonomy	Length
Ga0186413_100052	All Organisms → cellular organisms → Eukaryota	6669
Ga0186413_100057	All Organisms → cellular organisms → Eukaryota	6544
Ga0186413_100462	All Organisms → cellular organisms → Eukaryota → Viridiplantae → Chlorophyta → Mamiellophyceae → Mamiellales → Bathycoccaceae → Bathycoccus → Bathycoccus prasinos	4020
Ga0186413_101007	All Organisms → cellular organisms → Eukaryota → Viridiplantae → Chlorophyta → Mamiellophyceae → Mamiellales → Bathycoccaceae → Bathycoccus → Bathycoccus prasinos	3208
Ga0186413_101079	All Organisms → cellular organisms → Eukaryota → Viridiplantae → Chlorophyta → Mamiellophyceae → Mamiellales → Bathycoccaceae → Bathycoccus → Bathycoccus prasinos	3130
Ga0186413_101331	All Organisms → cellular organisms → Eukaryota → Viridiplantae	2896
Ga0186413_101555	All Organisms → cellular organisms → Eukaryota → Viridiplantae → Chlorophyta → Mamiellophyceae → Mamiellales → Bathycoccaceae → Bathycoccus → Bathycoccus prasinos	2711
Ga0186413_102356	All Organisms → cellular organisms → Eukaryota → Viridiplantae → Chlorophyta → Mamiellophyceae → Mamiellales → Bathycoccaceae → Bathycoccus → Bathycoccus prasinos	2127
Ga0186413_103375	All Organisms → cellular organisms → Eukaryota → Viridiplantae → Chlorophyta → Mamiellophyceae → Mamiellales → Bathycoccaceae → Bathycoccus → Bathycoccus prasinos	1594
Ga0186413_103649	All Organisms → cellular organisms → Eukaryota → Viridiplantae → Chlorophyta → Mamiellophyceae → Mamiellales → Bathycoccaceae → Ostreococcus → unclassified Ostreococcus → Ostreococcus sp. 'lucimarinus'	1471
Ga0186413_105069	All Organisms → cellular organisms → Eukaryota → Viridiplantae → Chlorophyta → Mamiellophyceae → Mamiellales → Bathycoccaceae → Bathycoccus → Bathycoccus prasinos	942
Ga0186413_105522	Not Available	778
Ga0186413_105552	All Organisms → cellular organisms → Eukaryota → Viridiplantae → Chlorophyta → Mamiellophyceae → Mamiellales → Bathycoccaceae → Bathycoccus → Bathycoccus prasinos	768

Sequences

Scaffold ID	Protein ID	Family	Sequence
Ga0186413_100052	Ga0186413_1000524	F102428	LTGIANADLESTSIKSQSKAQHANDFFAKYPSLHAFFDHELELSAIDEGDETCELEIRPSLNAILSILTRLKVNTNDGGRNVIEDDILDPSSFIPHLEACSSSKYMSIRDRCATAVATVARPFERSRIVTAALDEATYSEGYSNRTHGALLRTRSVLKVILDECCARNSTHKMCDEFTEEIARCALRGLLQSSHLFTDMDGPGSSTVPALLASTWLECAIATLHLSDVVISRASSSNICSPRLSSMPAALLEIVDASTTSVDVFQRLLDQRYLGEPGLSNLSSVISSRLVEWNIVNKKDVSTISRVLTEDRVPYEGKEAILETLLTCALANKISDTDACSLEASIWEYLHRTTSCLGGVGCDYECSYASLKLTLQLLGGWNITSRNHSEHLNTLGALQQRIRNEECRVEAMRTWGVLLSGRMNEARVCDENMSEIAANAYEFVTLLDCETLDWQSGSTDVRLAAADALHNSGLLNFVFRNGDKELVSSIAVNNEARTKLVEITFRLLEDEDDDVRRSACEGIMCAINGTIKLDDLPRTEYVIKIAFHALFDGRTIMRPWLADSFARLLPEVNKSTSARLLSAFSEQIKSSPRNHQKIFDEEEHPRKEQMLLAQMATHALKCGMMRNDSYTNSVVTALSTANVTIEGCVNNLERLINIAKSANIDASRYVNENVEAFHFVTVNMIVIWMLKKSSPPARIRDICDVFSKESSVYPSLRDLALCTVLGNSSKEGLDVNQRHHPCFLL
Ga0186413_100057	Ga0186413_1000573	F057841	MTAHVESSSYGATKCDSDTDDTIADESLLLPQGTQTPARYCFQCIDDQQHPSIFWDNFSTAMWLITDILWTENNPLAVCIAPFVVVGYVKAFFSFDGDWARYATDLARTVAMCSWILGNTFWLFQELSENKEKTGIDATILFPYDPWVILTLFLITMMIEPGIFFYYRSRGIDWFKLTPILKPIGNMGMMCWAMKDFAWYLAGEEILKEEYVWIPKVVWAIADVLIMYQLFPMFFQALQAWGIFSCFTEYASYKQREKTFFERFAHVIDELATSSWALSMTLWSFGEIFMPNDTFAQNLTNAPAKGNLRWWCGHVLILGAFPFFVKVTMDVFSQINYVAKKRRRSCPENLEN
Ga0186413_100462	Ga0186413_1004621	F064692	MPPMIEELGLHPGDVSRFGCQYDGDAPKMRSEMSVEDEEDPIARTFNATVHSVLDRLTANPRSKIIAKDTETLLSILSEKIALIPRAHRCLIERLDGTSHAKHDVLSCTDIVKYLNEQVEVQEALEKVCLADVPHLYRKGFTVLKSGDKVYRDETLFVTNNDALQQQSALDFFPDIVGEKVSVCFVTTAPSSFVTPRPRAFRVHVRGDLTSSDLRGMNVENLSMLKLDPLSFSATMRRRHRDQTKATRDNRANKEVFQDVDPKVTSLKDCMVLLTNGCRRIYVVTGDLTGSSGVLDARNFLVGLIVQDEDIECVVSEGSQ
Ga0186413_101007	Ga0186413_1010071	F043073	TPRLFTNQNIVRFDRISRIRTTQSYCIMWSSLSSSQKVILVSNLMGVYYAVCILGDKIGLPMESAGSKFFGKASVVQASGASWTGLLLCTMLADGFYVCFKCSESARLRYCVLGLVCACQRLTLQIAHSTPAIRAVGGISAAKEYTPGIIASFVFIGLFASVVQTSNLPAGKVWFKPATTTAKCLFGMTLGCLGFFFQMTMTDFLAVAYNVRGKRTAIEYAQMDWACVMLMGTIIGLIFAQSYLNENEQVGFAKVRTVATLCMMYLMRTEKSITPCKFHKESMIQMGIMAAMGIYAAHGKDIMKKLKLA
Ga0186413_101079	Ga0186413_1010791	F044280	VTTNRIMNRGKLATWLFTLFVLVFRVPVFLNSKTKSTFAPIDNFAAFVTKYFSGTDDDGAPLPQPPVIARALLYPSQLTTQLSQSLKCNAKENMKVTKIEGKEDYNCPPYFPEFESFVTRKEIMRTHKRLVKTFGEDSRTIYVVYIGSVLLTYSAAFAFFSGTCGRVGVYAIAMLALGTLTNSGKRDGVVPLPGLFIISALTFTSMIFGRKTRRRTKNKKQKTR
Ga0186413_101331	Ga0186413_1013312	F091243	FFEIPPLKKRRSSAHTHTHTHKRCARRSVVVVVVHEKQNAMMSRHYYRHRISPPLFFFFFLATCVAFVAFAIDRSNAIRVPDFTTGIKSKFSVMNESVKMMNPKNRRAKELEEREALMKDAYGDDKIVGWDAVNNKPIYDENWSSNKALLEKYNPGSTAREDLPKYKHLADREEEQNWLYRNSENAELMKEFERRKQIVYAPPAPILQGESTKAVDEALLGGMSPEERGKMDKSLTSFQRKVMNAMLGGSQVGSDDCNVDAVKGGFLTDRQIQHLREQKAKIGKDSFHHAAGKLSKGGHVESKLEMDAEHRRCVEEVVVNDMCDRAAAGAYLNKVLKEAEGMWKKMQGTSIRDHARYEPLNEKAMVARNRWGAAKKCVDTMMPGYWRETVASEKFRKREEGISDASRKFAAMGGMEKGKVEINGKKIHT
Ga0186413_101555	Ga0186413_1015551	F075610	VMAAAAAHAQRHALSSDVDHYSSPSVRLSADTSNAGSNARSVLIENDYEVTYGTYFKIVRMKCGFHHVVNNPSRCTKITYVLRKRGTAIPTTDPHTNESIETTNEDGVQTRHFEIPATSIAVGGTFVLAYLEMLDVNTDTLKLIDSRRMHSPCMQLAVHTGDIVDQATAVYDSNWNMDTSAWSAKCDELNVDLAFTDEFGTGKCDNREDANVMFHGNADNTAILRAEWVKFVSLFFDKEQFANEYFALESDAVDAIKNYVEKGIVASLAEKKTCVWVQKSFDGQHYEILHDVYRTSLCTDAGMNAYEGEEGALKKAFAIDTQLEQFHSTIRDYDVVVDESYFYNVSSKNVTDYENNLAFDQLSGETVKAKTGNGGLLLRVDASRGNAMTDDLKESGEVRPALLLNDFVSNVYGGTLSNHDSCPKYFRRADEPEIYVTHENCAALEAADNEKKCVSDLKEEAERLTPSSSVLDSSAVAMRGTMLARIGVSIATTMVVLLTIA
Ga0186413_102356	Ga0186413_1023562	F040116	CIKNMEPTNIVLGASTGISTVDAIPNVEAFGMLFLGFLFCFFGLKYHMYFQYCLTFVAGAFFSVRLLGMASDAIPGDLVNADNELYIGAAFGLLMCMGIFFYNFWFYRILAACAGFGLGGGATILIGLFAPIAADYVLYTGAAGAVLGIFFMTTYIKTLVGMMYILCGGFMVASASSFFLEEASLSKSSPLWITNSLSINLRDPATLASIMCGVVCAGFGYCFSTRKKKDGMHEDEENAPLLSKR
Ga0186413_103375	Ga0186413_1033751	F089782	MATLGSENKDESIAKNALQFSKKAPSGAFSAIDEQSATDSGLFLRELSEVSPQSVANPLLCDGVFVCSNVLEDHNASSSRKSHAFAILANMFVNDDVLSRTQLHKNKKLAKIAIEHLFSLDTTVDRPCLTEVARLLVAAGQKCKSMGYQWGELGDEMDDVWWLELLYDEDVQQRLKSIKELGENAATNRGGSVDELCGLIGDIELLTVNSPVGTMM
Ga0186413_103649	Ga0186413_1036491	F064084	EREEMRPIVNTIVSGGETSSSQQPGVVLGKPNAPKSAVAAKYNNCGKKSVSFAESDELLGGSIIQQGDHHGERRKKRDGGLLLLFSNWRTAYAISLACAALLAMPFAYMAGYESATTSLLHKFGVAPVPSTSVIGEFYHDALTGMFPDGIPQWPLDINLMIITRHQNKEDYQGFHAIKAVFPRAEQTWGVEPTAWPKHIDEAEHAVSNIRNINARNFADVNKIASSKDRYWDERRSAQNLVGVPWIDAIDLREANTGALRSERVGLSHHIGCLFAHMKAWQNMKDLGMNKAWIMEADGLLKMQEYSNIPLWAMTSVAQNLPEDADFVLLHKGMDKFCGTDGSLCAMHSTFEAKNLFDPSDRAMLSFRHWPVEGSEAGLQTYIVSERFVDKMQEFLAAHGSDMIDAFLYGNLCQNEYKSQEDRGKLWAMNYMHQHAQKAPYSSADERGLKILNCYIVAPA
Ga0186413_105069	Ga0186413_1050691	F088834	MFSATAANKAKGDEEANTVAQASAQLAAMQQRKDNQYNARMAIYDWLDRLVMDKKRFVTTFLAYTFCVIVMGVYIGDWNSATMPGREQGQWCAMQAKECKRQADVCLVSGGIRAGSAQPMVGLDKEKAFMEGGDIGGTDFAGGEVPQHIQQMHAEWTQSRDNRAATVARLKELRVNLLCHELRVQQQRKKGALDYDRINSFMNKAGKARGEYEKLEAVVKVVYPEVIPEVEELDQMKNPDCKHVHGGRV
Ga0186413_105522	Ga0186413_1055221	F082736	LLSSSVLLRFLRSRYRFFLLLQHELDVARRRHVRVDATVRSVRSSSLRNSPVDLDVRDVKVIDVQTLYFGVRLGVLEQIDQDFRALLWPSALAVRGAFLLRLGRSPDATAESAKDDASLHLHDRVQETLRIAQTSPFDVHRRLSHVLEMHSQIRASRFARFRRVVGLSGVLDHRVVGKKKFVFFCSVGGGEWPFSIQLKGKK
Ga0186413_105552	Ga0186413_1055521	F102591	KGDFSSLLPHLNNNTHYLAHTFIPNSSFIIIMAPTTAQKLLAAYNGFYGVTLYHNWVTYYGPKGIMPYFLKTEGPVALMAWRMLGCLLLGITYGLLTAGPKDKTALKIATVGQAMMLPLMAMAGFGTDAATYAQTMWKTQLVVHAAMTYVGYSASQPTKTRSSSRRR