3300016689: Metatranscriptome of coastal salt marsh microbial communities from the Groves Creek Marsh, Georgia, USA - 011509AT metaT (Metagenome Metatranscriptome)

Overview

Basic Information

• IMG/M Taxon OID: 3300016689
• GOLD Reference (Study | Sequencing Project | Analysis Project): Gs0128817 | Gp0208592 | Ga0182050
• Sample Name: Metatranscriptome of coastal salt marsh microbial communities from the Groves Creek Marsh, Georgia, USA - 011509AT metaT (Metagenome Metatranscriptome)
• Sequencing Status: Permanent Draft
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Published?: N
• Use Policy: Open

Dataset Contents

• Total Genome Size: 62387767
• Sequencing Scaffolds: 29
• Novel Protein Genes: 33
• Associated Families: 31

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
Not Available	14
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Acidimicrobiia → unclassified Acidimicrobiia → Acidimicrobiia bacterium	1
All Organisms → cellular organisms → Eukaryota → Sar → Alveolata → Ciliophora → Intramacronucleata → Spirotrichea → Oligotrichia → Strombidiidae → Strombidium → Strombidium inclinatum	2
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → unclassified Flavobacteriales → Flavobacteriales bacterium	1
All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	2
All Organisms → cellular organisms → Bacteria → Proteobacteria	2
All Organisms → cellular organisms → Eukaryota → Sar → Alveolata → Ciliophora → Intramacronucleata → Spirotrichea → Oligotrichia → Strombidiidae → Strombidium	1
All Organisms → Viruses → Predicted Viral	2
All Organisms → cellular organisms → Eukaryota → Viridiplantae → Chlorophyta → Mamiellophyceae → Mamiellales → Bathycoccaceae → Bathycoccus → Bathycoccus prasinos	2
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes	1
All Organisms → cellular organisms → Eukaryota → Viridiplantae → Chlorophyta → Mamiellophyceae → Mamiellales → Mamiellaceae → Micromonas → Micromonas commoda	1

Ecosystem and Geography

Ecosystem Assignment (GOLD)

• Name: Coastal Salt Marsh Microbial Communities From The Groves Creek Marsh, Skidaway Island, Georgia
• Type: Environmental
• Taxonomy: Environmental → Aquatic → Marine → Intertidal Zone → Salt Marsh → Salt Marsh → Coastal Salt Marsh Microbial Communities From The Groves Creek Marsh, Skidaway Island, Georgia

Alternative Ecosystem Assignments

• Environment Ontology (ENVO): Unclassified
• Earth Microbiome Project Ontology (EMPO): Free-living → Saline → Water (saline)

Location Information

• Location: USA: Georgia
• Coordinates
  • Lat. (^o): 31.972
  • Long. (^o): -81.028
  • Alt. (m): N/A
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000048	Metagenome / Metatranscriptome	3365	Y
F000052	Metagenome / Metatranscriptome	3223	Y
F002698	Metagenome / Metatranscriptome	536	Y
F004461	Metagenome / Metatranscriptome	437	Y
F005967	Metagenome / Metatranscriptome	385	Y
F012878	Metagenome / Metatranscriptome	276	Y
F016139	Metagenome / Metatranscriptome	249	Y
F019481	Metagenome / Metatranscriptome	229	Y
F020542	Metagenome / Metatranscriptome	223	N
F022590	Metagenome / Metatranscriptome	213	N

Associated Scaffolds

Scaffold	Taxonomy	Length
Ga0182050_1001261	Not Available	656
Ga0182050_1008041	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Acidimicrobiia → unclassified Acidimicrobiia → Acidimicrobiia bacterium	1155
Ga0182050_1009329	Not Available	1061
Ga0182050_1011302	Not Available	723
Ga0182050_1015810	Not Available	658
Ga0182050_1016466	Not Available	510
Ga0182050_1019067	Not Available	530
Ga0182050_1023370	Not Available	738
Ga0182050_1024379	All Organisms → cellular organisms → Eukaryota → Sar → Alveolata → Ciliophora → Intramacronucleata → Spirotrichea → Oligotrichia → Strombidiidae → Strombidium → Strombidium inclinatum	613
Ga0182050_1034043	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → unclassified Flavobacteriales → Flavobacteriales bacterium	1028

Sequences

Scaffold ID	Protein ID	Family	Sequence
Ga0182050_1001261	Ga0182050_10012611	F070820	KRRRIKPFARPTSFDINVVFDIRHYQSVKYGNVIDPYFPAHGTDEAYHVMEGEVLMTTNTPQVRRYGDHQMHVFSFANGLKADGAVLNASDAAFAPEKSPPKAAVLAGLKYAGVAVTEFAPERDIFEQGFVMTMAGLNTLFNNGNSIIYPGDVICADIPFSAAKGARKNRALQTGVPREKLQFIVTPLRDLMAQGVPERLASRFIMGTALSYSRPGSS
Ga0182050_1008041	Ga0182050_10080412	F002698	DQHALTEFINRVKLIDSFIYMKIKDGQIQSTVYLPQRDAVKHHSIQADTIFQVSEWPDTDKEMKIAFFEGSKVIEAIKHFEHDAIKGELEFIENDDEFVASTLRIFNDELEITLSCSEPSLGFKDLSQDQRDAIFARSDAKFDFTLDTHSIGKVKNLFSLDKDETFGINSDVQGINVNGKSFNVVLTPDTSGNGNVTVYKKYLNLLDKEEQTVYVSDSKVVFESNDSHTLLTISTCQTA
Ga0182050_1009329	Ga0182050_10093292	F101072	MKMNMKMPKLSQQAMIVAFAAVLPVLASAYKLRILDAAVLTLSGALAVYNVNCLTAGSCNTWATIVSISFFVMTIMQLMAPREGLEGDEMPKEEVLVADAKEVTQVPAKDEEKPAATAEPAPTEAKMPVEAKPEKAVVKSAPLVTTDEEFEMLKAQLMG
Ga0182050_1011302	Ga0182050_10113021	F005967	MAVTVATLDWGNRTPDLFIDSMVKSAAVLERFRLIDGVKSKVQVPIFDASLTFGSDLCTFDPQSSASIDEKEMTVSTYKWAFKNCKNVLETTYRSVLLKKGQHNPETMDGEFKDWVFDYFAKLSAQKALELAASELTTEMAADADVITYDTDAVLSDANILTHLEGAYQAMSAEMLSQIYGGADRALRPAIFVGTKAMQHYQIAIADKHTTTPQGIIDGGV
Ga0182050_1015810	Ga0182050_10158101	F082736	LLSSSVFLRFFRSRYRFFLFLQHKLDVARRRHVRVDATVRSVRSSSLRDGLIDLDVRDVEIVNVQPLNLGIRFRVLEQVDQDLRALLRPSALAVRGAFLLGLGRSPDATAESAEDDASLHLHDRVQETLRVTQTSPFDVHRRLSHVLEMDSQIRASRFARFRRV
Ga0182050_1016466	Ga0182050_10164661	F096507	NSTISIGSSSDNGETYSTSFTVDDEVTLTAKIYPDSGDVGEEGELYVVMRSTIDGKSVFSALNQSGNWEIWNLSLKSLPAAQYVEYLESVEEVLIYSGALTAGDRAFYVGYSIFPFPFYGWAVTTNLSPFKITVSE
Ga0182050_1019067	Ga0182050_10190672	F059920	MRHSVGKQLTAGVANTIFVVPQGYKAEVDLLFISNLDANNKTTTAYWQHAHDINHKIKIIDLYPMSSHSYLQFSNGSIVMQQGDSFVIEPQEGA
Ga0182050_1023370	Ga0182050_10233701	F033652	MNKKLFASALFAAGAFVSTSALAALGFETSVGNKADGYLQSGNAKVAAGGSSVRANDILINVGGASDIPASTTTTKSEIIVRLPKGLNFSEVPGFKATQAAPGAGLTLKDGSEYGDPTLDAPGVTWSDANGDGGYDRAVVTVAAASAQGDSLTISINLTADSTATAGVKKVSVVVNSGLAVPQDIVEVVSGFTEPVFSASGTKLKTLSQSAQTATVSTQKFTVTVPKGT
Ga0182050_1024379	Ga0182050_10243791	F039672	PKMAPDLTSKRVGQRLPECSAEVVLSTLLFEEIEFLEGLQSVDSEDKSIVWSHTETGHEILNLNVVEDHGGDVVGVLLGHGLVGVGLNLGGDSVGVSEDSGGDLVAESSGVVVSLLLGVGDSEREVLGDLVEVSPDGGEELSLWVLLNLSGFGSSGLVSSDVLIGNGISSDIWESSNVLNRVWVMVVSLDGSGSGDKSAISQEF
Ga0182050_1027556	Ga0182050_10275562	F019481	ASSAWTSNNIAMYPENYQGSISNSNEFCRFNILPSASDHLAYGGDKSLSGLLIIRIFVKAGEGQTRIMQISDILDNSFENKILTNKTEFGKSYLNVEGLDPANQSLYSAQYIIPFKIYGE
Ga0182050_1034043	Ga0182050_10340431	F020542	ERPDDFRLNDPRDVMGSNATTPRLQIEPFPNLDSYWIYYGTYWWGKHEHHQITDSIWYQKDTVISIQEDITGVAETHTYKLLRVLRRDVMDWVGQRDPKGVQHSPESQVTIYPRNQFVRIDEQGRWISLMIWISPTGLQKWEQVLMDVDMPIGTPWVEDYRVTETDTVIIDDRWAVQVSLREPYSISGVDWIEGVGPSRNSLLPGYDGRQTTYFLKKHFIY
Ga0182050_1035295	Ga0182050_10352952	F070044	DGWSLLEWIRACMDSGVQKPIGLSEAEITAFTDKALFESAPFESALARKSKPQKLVWVTNRTAFVRCALSGTIITMLIGAVIGAAITISSMWVLA
Ga0182050_1036194	Ga0182050_10361941	F046847	VNVMADEQKTAEVDTPTTENNEVVISQSKLDKLIDKGYSKGATRAKSELAEQLGVDSIEQARELINAKKEADEANKSDLDKAAELINTLNARIEGLESNNNQMKSDMEIQKVVNANGINDADYFKHLMAQASAGEDFEQDTFIEQLKGEKPYLFNNGVDSQPKRVDATSNKATLNAADRIKSTTSMAELYRLQDEIT
Ga0182050_1039145	Ga0182050_10391452	F105291	FEVIEMTETCKQMVHSSAAVRMAVMPWGSRSTAVLTNDLTSNISINKTWHENCKKPDVSKILDWLVL
Ga0182050_1039826	Ga0182050_10398263	F070044	SLLVWIRACMDSGVQKPIGLSEAEITAFTDKALFESALARKSESKKLLWVTNPTAFVRRALSGTIITMLIGAVIGAAITISSMWVLA
Ga0182050_1040465	Ga0182050_10404651	F026579	WRENMRINLIILMLAFAVMSVSQPTYSETISEVKIIFSADDGEKKPADEEPDCE
Ga0182050_1042838	Ga0182050_10428381	F012878	MAIRGDDNHPGLKNLVSIKDSEMAEEWRKRGLEVRRKNKEKRELAKQTILAMKSLGDEAPDAMSALNYVLVQAMEEGDTDQIIKVASILAEYQAPKLSRQDVTQTNLDASDLTDEELQA
Ga0182050_1046389	Ga0182050_10463891	F016139	MCSFLAHSSNVNDLLEGLDGVLENWLNRLHDSESSLHVVNLWLHSLDSLHLSGDLNEWLSIIKSLEDSSGKSLLDVLDGSGLGNSGVSISSGLSGLSLGELGLKGDKELVLVHGVVSLFGLEELSVVVVVVVSGSSRSNKGDSGEFHCLK
Ga0182050_1054077	Ga0182050_10540772	F033053	MNEAGTRAAATEVLTNNVHMKAADVPKYLETYFAKAWGHFDVNRVGKVEVIKMPQFMRFLASDQYLSLQHY
Ga0182050_1054677	Ga0182050_10546771	F000048	TSEVAATEGLAKPTNLDEVKALNDKVGAFAKSCENYLKVLMSADGAAKKMTTHAEADAEVAALKGRYDKVKAVSDTWVAKVDTLLKEWTLLDNTVTELNTWVAKDKSADGENQFSLEKMESTLGELKNIFKQKEKLVDGL
Ga0182050_1060181	Ga0182050_10601811	F032260	MTVAANASLKTEQKTLTGGNWTKILDEDHTRTYLCIQNHHDAHTIEVGFGTNTTEPTAATGFKLEGAVSGNKIGDTTFEFSVAPINAVWAKAEDTHD
Ga0182050_1062517	Ga0182050_10625171	F045998	RKKHDHRTHCCDTQQQLYSNIIKMGKINIETEVESVLSEQSATCEKLKIRVSETVEGVNLSAKFVLPVNVEVSSKGNLDANMQTSKVDLEAAKDFWKIKLDDVDQNTQNIMDVLKISVREKVSAIDSTATLEWKAKGNAVKGILESPVFEGVKSTLEFDNSKKQLTVTAKKKIDKIDVSVKADANVKTQTFKGGKMTLSYPLPEGVKGSLEASTNGSGKITLRRGNLSAKMPLKNFTSAPNMNDVKLEFNYSTDIASF
Ga0182050_1064449	Ga0182050_10644491	F025177	QMSIFAGSEASELDVREEAHAILRALNQIEMQLEAAIAAERILDRKQRN
Ga0182050_1066458	Ga0182050_10664581	F033652	MNKKLFASALFAAGAFVSTSALAALSVENSVGNTAAGYLQTDHAKVAAGGDPVQANDIIIGVGATTDIPAKSEIVVRLPEGLNFSEVPGFKVAQATAGSGLTLVDGSEFGDPTLDAPGVTWADANGDGGYDRAVITVAAAGAVGDSLTISVNLTADSTVTKGAKKISVVANNGLATPKEI
Ga0182050_1067784	Ga0182050_10677841	F095509	YFMKKHMISTAIGLLAIACTQAPEPCPPQQESPAVGFNNLVEDFPGAEMGSQSDVDIWLKYLEYLNAKDLEGLATLQADSIEVHTANGRYIKGAEAHRAALSEWIYDTDATWKPVWGTAIRQAGGDTTGSFVMAVSDMTVRDGEETRRVNNMFTVWIKDSKVQAFWFYKRDFTQKELDMIEAAEAAKAQE
Ga0182050_1069167	Ga0182050_10691672	F004461	MVKSAAVLNRFRLIDGVKAKVNVPIFDASLTFGNDLCVFDPQSAASVGEKEMTVETYKWSFLNCKDALESSYRGLLLKQGQHNPETMDAEFKDWVFDYFAKLSAQKALELAGTELTTEMAADADVLDYDTNATISSTNVLSLMEGAYETMSDVMLAAVYGDADRDFKPTYFLGTAAMQAYQIAIAGLYTTTPQGVVEGGIPSYYGMEVAHFASMPANEFIIAAPQNLVMLTDDYNDVRAIDMKYEAELSSDKIWGQFKLGFSYLKGEEIVYAKNFA
Ga0182050_1070145	Ga0182050_10701451	F000052	TRRLVPAQNIVPVRDSRQGASDVDVSFPAVAAAGPGADGKRCIDKVEMVEETEYDEVVQCDHSYDRRCHTSYVTNYESQQEEECEENFRKNCFIDYEKIAFNETVQICRTPLVKDCDVQGPEICRTEYESECWTKQEEHDVEDDVVECTTVQDEKCADETSGYTTFTKCSKWPREVCSVAKKNVKKYTPITGCTKEPRELCAPAGCGFKEGAEVCYDKTQTIVQDAPKEECTLEPQRTCAHVTKLVPKLEP
Ga0182050_1074130	Ga0182050_10741301	F036678	FPDTMRQTPINFSHAIAMTLLALAPAMVQGQATALPPAYLVAGDAAVSEPLINEVVGTYKYRKVVRVDGEEDRNMEIKLDVLPRSPTRLYAELFVPNRNLQNCTYRGIFEFKGSNEFIAIDDVNNPKSCIMEFKINANSIVLIDQSHDRKQCSIKASCHPDGSVDRIYFSKHIKEKTNLVSSILTS
Ga0182050_1075777	Ga0182050_10757773	F036244	FVVFLSFLFQFTFAKGETESDESLLSELQSELQEVINWECSPDNPSLGKFINLKCNLLSTGD
Ga0182050_1079412	Ga0182050_10794121	F105252	QHQSNMQKYSHPTFKTKNPGFIHISHDAEIHDGLRLSYGFCSYNFLCWQGVKARSYTQVQENRVETNTPVMLCPGFCIKDVIDVTYYDQISAPYKRATCGTPYHLCCFIELCGQVAATAPHPALNNLCCPCLRKYQIGLADAETFSTEMEKSYEAFKAKPSERAAPKVQVME
Ga0182050_1085477	Ga0182050_10854771	F059984	MNQSTKQQRPLAIAFVLGMLLTLFMGLMVLRMETAMLETGRTGFEGVGGLFVLLVTLLAVLVAGAVLWAMPSIQQQERRVQWSRLFSLKALVYFGLLFFVGFQIGPGVVLGDVSAGEVLFMLFVMAGLSV
Ga0182050_1107248	Ga0182050_11072481	F027652	KQLIKLKYRRIFTMFKSVFPKFNKESFGQRLEKVPKEFHKYMVEQQRFIRLRQSAEAILKRKKPLLEEMVSKVHDHERKNMDVYVLHDSTLPRDLVLIFRRDKSGAYNNVSSPEIDRLRTKIQHCKEEIIRLQEQIYPRGTEDGLSPEEKYDRIHPKGYYKNEAATRRPTKLEHDINTTEFSVWDKPDTRTPFQKGDEPVLSDLIKAGVYVYPVRPVNWKTPTDVETPPERIHVTYCDHIENTEETSESDEGREN
Ga0182050_1116042	Ga0182050_11160421	F022590	EVGESHTLTIDGVSFTYNVAEGDTAEVVANALLSQINASFADSEISAALIMREEERWDPETDTSMFMTVVDRIEISGPADVLTPEVMSGITLSSVDISGSEMHATMGETGTPGTPSTAQIHLSTLNGHEAPEVGESHTLTIDGVSFTYNVAEGDTAEVVANALLSQINASFA