3300016676: Metatranscriptome of coastal salt marsh microbial communities from the Groves Creek Marsh, Georgia, USA - 011513AT metaT (Metagenome Metatranscriptome)

Overview

Basic Information

• IMG/M Taxon OID: 3300016676
• GOLD Reference (Study | Sequencing Project | Analysis Project): Gs0128817 | Gp0208596 | Ga0182054
• Sample Name: Metatranscriptome of coastal salt marsh microbial communities from the Groves Creek Marsh, Georgia, USA - 011513AT metaT (Metagenome Metatranscriptome)
• Sequencing Status: Permanent Draft
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Published?: N
• Use Policy: Open

Dataset Contents

• Total Genome Size: 19249576
• Sequencing Scaffolds: 11
• Novel Protein Genes: 11
• Associated Families: 11

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
Not Available	10
All Organisms → cellular organisms → Bacteria	1

Ecosystem and Geography

Ecosystem Assignment (GOLD)

• Name: Coastal Salt Marsh Microbial Communities From The Groves Creek Marsh, Skidaway Island, Georgia
• Type: Environmental
• Taxonomy: Environmental → Aquatic → Marine → Intertidal Zone → Salt Marsh → Salt Marsh → Coastal Salt Marsh Microbial Communities From The Groves Creek Marsh, Skidaway Island, Georgia

Alternative Ecosystem Assignments

• Environment Ontology (ENVO): Unclassified
• Earth Microbiome Project Ontology (EMPO): Free-living → Saline → Water (saline)

Location Information

• Location: USA: Georgia
• Coordinates
  • Lat. (^o): 31.972
  • Long. (^o): -81.028
  • Alt. (m): N/A
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F006282	Metagenome / Metatranscriptome	377	Y
F006847	Metagenome / Metatranscriptome	363	N
F007167	Metagenome / Metatranscriptome	356	N
F009208	Metagenome / Metatranscriptome	321	Y
F020894	Metagenome / Metatranscriptome	221	N
F022590	Metagenome / Metatranscriptome	213	N
F040472	Metagenome / Metatranscriptome	161	N
F070044	Metagenome / Metatranscriptome	123	N
F077332	Metagenome / Metatranscriptome	117	Y
F080899	Metagenome / Metatranscriptome	114	Y
F094104	Metagenome / Metatranscriptome	106	Y

Associated Scaffolds

Scaffold	Taxonomy	Length
Ga0182054_100142	Not Available	516
Ga0182054_115952	Not Available	674
Ga0182054_118544	Not Available	627
Ga0182054_118989	Not Available	508
Ga0182054_119675	Not Available	773
Ga0182054_121575	All Organisms → cellular organisms → Bacteria	504
Ga0182054_129982	Not Available	694
Ga0182054_133349	Not Available	518
Ga0182054_133528	Not Available	568
Ga0182054_136896	Not Available	600
Ga0182054_141379	Not Available	551

Sequences

Scaffold ID	Protein ID	Family	Sequence
Ga0182054_100142	Ga0182054_1001421	F022590	IMREEERWDPETDTSMFMTVVDRIEISGPADVLTPEVMSGITLSSVDISGSEMHATMGETGTPGTPSTAQIDLSTLNGHEAPEVGESHTLTIDGVSFTYNVAEGDTAEVVANALLSQINASFADSEISAALIMREEERWDPETDTSMFMTVVDRIEISGPADVLTPEVMSG
Ga0182054_115952	Ga0182054_1159521	F009208	WNPKSSQIKSQTLIVMADSKSSDGRVTAFTLLFAFAVVLAAYLSGPENNFWMAPGAIMYMVLLLSIAIPRWWILGDDTTLGKNLSVIIALLIAPSVMAPVFGIKTSTNVYNYWRSIMIPLYLGYAFMKRNMPGSSILVTFSTPLILMLSMIFSINPLPNAIKIPGTNVANK
Ga0182054_118544	Ga0182054_1185442	F080899	IDVITTLRQTIKVPEDFDKQDILNFLASQQSFNDAFQGLENDAYPGVSITEIEVIDEEFDDA
Ga0182054_118989	Ga0182054_1189892	F006282	MIDLKKRVAELATQNTQLADHLASMCCQADEDCPAEYRTEHFRSTMDDAYDYLKKIGYLK
Ga0182054_119675	Ga0182054_1196752	F070044	MDSGVQKPIGLSEAEITAFTDKALFESALARKSEPKKLLWVTSPTAFVRPALSGTIITMLIGAVIGAAITISSMWVLA
Ga0182054_121575	Ga0182054_1215751	F006847	AILKGVFGYIFEARQNKHDLEMAREARASDNFLRLQAELAKSGTGEFVSFTRRILAVIGVSTLCTCIILCTLFPTAEIVTLTNADGEGVNEFFFGLISFQANQEPLTISSGHISLMGCTVILPCILGFYFGPSGRRG
Ga0182054_129982	Ga0182054_1299821	F007167	LQTIQAIRGMLPSFTFAIILSFNTSMEVKDAVFGFYLSPSSAVYIPKEGTETKKMKDGTIIKVPKYMYHPLTVEIMPRTDYKTIQHPKRKKFLFSMRETKPVPADIRKYIDNPEPEKLREALTIIQRRIRQMFETPIQTMTLVAFRFDGVPWKVHRMHWDEKQEVSYRKDGEWVTTTMKRLGNPWDLKNKVERDRKKAELFNVISNLLEDKDKIPYVSRMLIDRFR
Ga0182054_133349	Ga0182054_1333493	F094104	REQIVEQLQEFMERAKDRMVDVTPTENPTESEQIPITDCSGEAE
Ga0182054_133528	Ga0182054_1335282	F077332	MRYILKVNCGDGRIENIWSGNEMSEAIRLEAIAIKHWGKDNVWICDCVMEMLVG
Ga0182054_136896	Ga0182054_1368961	F020894	LPSNRILLTNPDTGNVVQRIAASRDEKWVFNTKTKRFNLIPKNRNAPKKPIRRNVRIENAGLMNINLRAVNKVFPEPKNTDVRFSPLRPSLFGLKVKFQKDLGFRQFSDLAYEFAKKPFPNGVTRVVIRGDRFRALVDIKTREQQNRLNKNLFKIVRRIDVNMGDYNIQIFRTGMLMNGGYEKNPIEVPLNYIDGRKIF
Ga0182054_141379	Ga0182054_1413792	F040472	MKFLVPLLLPLTLLGQRFHLEESTSFTIEYAPISLVRIGNTQLSVDCDNPLESGLGLLENPISITPQELFITKSKHSTKSLLISRNSQSLFNLVAEAQPGISNTGSFTPSGPINLNEISQILLTPSDGLSTGHLPGQGIPIS