NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Sample 3300014948

3300014948: Human fecal microbial communities from ulcerative colitis therapy, University of Washington - UWIBD01P271T2



Overview

Basic Information
IMG/M Taxon OID3300014948 Open in IMG/M
GOLD Reference
(Study | Sequencing Project | Analysis Project)
Gs0121299 | Gp0151659 | Ga0134487
Sample NameHuman fecal microbial communities from ulcerative colitis therapy, University of Washington - UWIBD01P271T2
Sequencing StatusPermanent Draft
Sequencing CenterUniversity of Washington
Published?N
Use PolicyOpen

Dataset Contents
Total Genome Size92504574
Sequencing Scaffolds9
Novel Protein Genes9
Associated Families5

Dataset Phylogeny
Taxonomy GroupsNumber of Scaffolds
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae → Faecalibacterium → Faecalibacterium prausnitzii5
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Lachnospiraceae → Dorea → Dorea longicatena3
Not Available1

Ecosystem and Geography

Ecosystem Assignment (GOLD)
NameHuman Fecal Microbial Commmunities From Fecal Microbiota Transplantation (Fmt) For Ulcerative Colitis - University Of Washington
TypeHost-Associated
TaxonomyHost-Associated → Human → Digestive System → Large Intestine → Fecal → Human Fecal → Human Fecal Microbial Commmunities From Fecal Microbiota Transplantation (Fmt) For Ulcerative Colitis - University Of Washington

Alternative Ecosystem Assignments
Environment Ontology (ENVO)Unclassified
Earth Microbiome Project Ontology (EMPO)Host-associated → Animal → Animal distal gut

Location Information
LocationUSA: University of Washington
CoordinatesLat. (o)N/ALong. (o)N/AAlt. (m)N/ADepth (m)N/A
Location on Map
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Associated Families

Associated Scaffolds

Sequences


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