3300014869: Subseafloor sediment microbial communities from Guaymas Basin, Gulf of California, Mexico - Guay13, Core 4488-10 , 4-6 cm

Overview

Basic Information

• IMG/M Taxon OID: 3300014869
• GOLD Reference (Study | Sequencing Project | Analysis Project): Gs0127394 | Gp0206533 | Ga0180298
• Sample Name: Subseafloor sediment microbial communities from Guaymas Basin, Gulf of California, Mexico - Guay13, Core 4488-10 , 4-6 cm
• Sequencing Status: Permanent Draft
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Published?: Y
• Use Policy: Open

Dataset Contents

• Total Genome Size: 184609990
• Sequencing Scaffolds: 14
• Novel Protein Genes: 15
• Associated Families: 15

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
All Organisms → cellular organisms → Archaea	1
Not Available	8
All Organisms → Viruses → Predicted Viral	1
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Flavobacteriaceae → Altibacter/Constantimarinum group → Altibacter → unclassified Altibacter → Altibacter sp.	1
All Organisms → cellular organisms → Archaea → TACK group → Candidatus Bathyarchaeota → unclassified Candidatus Bathyarchaeota → Candidatus Bathyarchaeota archaeon	1
All Organisms → cellular organisms → Archaea → DPANN group → Candidatus Woesearchaeota → Candidatus Woesearchaeota archaeon	1
All Organisms → cellular organisms → Bacteria → PVC group	1

Ecosystem and Geography

Ecosystem Assignment (GOLD)

• Name: Subseafloor Sediment Microbial Communities From Guaymas Basin, Gulf Of California, Mexico
• Type: Environmental
• Taxonomy: Environmental → Aquatic → Marine → Hydrothermal Vents → Sediment → Marine Sediment → Subseafloor Sediment Microbial Communities From Guaymas Basin, Gulf Of California, Mexico

Alternative Ecosystem Assignments

• Environment Ontology (ENVO): marine hydrothermal vent biome → undersea feature → deep marine sediment
• Earth Microbiome Project Ontology (EMPO): Free-living → Non-saline → Subsurface (non-saline)

Location Information

• Location: Mexico: Gulf of California
• Coordinates
  • Lat. (^o): 27.0154
  • Long. (^o): -111.3798
  • Alt. (m): N/A
  • Depth (m): 2000

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000352	Metagenome / Metatranscriptome	1247	Y
F001740	Metagenome / Metatranscriptome	643	Y
F015742	Metagenome / Metatranscriptome	252	Y
F025034	Metagenome	203	Y
F029758	Metagenome / Metatranscriptome	187	Y
F030400	Metagenome	185	Y
F032680	Metagenome / Metatranscriptome	179	Y
F040581	Metagenome / Metatranscriptome	161	N
F045994	Metagenome / Metatranscriptome	152	Y
F063711	Metagenome / Metatranscriptome	129	Y
F064214	Metagenome	129	Y
F080879	Metagenome	114	Y
F085719	Metagenome / Metatranscriptome	111	N
F087209	Metagenome	110	N
F094519	Metagenome	106	Y

Associated Scaffolds

Scaffold	Taxonomy	Length
Ga0180298_1000597	All Organisms → cellular organisms → Archaea	8847
Ga0180298_1012188	Not Available	1691
Ga0180298_1024607	All Organisms → Viruses → Predicted Viral	1113
Ga0180298_1036840	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Flavobacteriaceae → Altibacter/Constantimarinum group → Altibacter → unclassified Altibacter → Altibacter sp.	882
Ga0180298_1037241	All Organisms → cellular organisms → Archaea → TACK group → Candidatus Bathyarchaeota → unclassified Candidatus Bathyarchaeota → Candidatus Bathyarchaeota archaeon	877
Ga0180298_1041590	All Organisms → cellular organisms → Archaea → DPANN group → Candidatus Woesearchaeota → Candidatus Woesearchaeota archaeon	822
Ga0180298_1052834	Not Available	720
Ga0180298_1061929	Not Available	658
Ga0180298_1067052	Not Available	631
Ga0180298_1072230	Not Available	606
Ga0180298_1072784	Not Available	604
Ga0180298_1073709	Not Available	600
Ga0180298_1081950	All Organisms → cellular organisms → Bacteria → PVC group	566
Ga0180298_1098678	Not Available	514

Sequences

Scaffold ID	Protein ID	Family	Sequence
Ga0180298_1000597	Ga0180298_10005972	F080879	MKVEKPEKIVGYVLLVIGLIFIIIPAWLAYSIFSSGTQIPQLVPTPTGSENDFSKAFATFSNVCLIFFIFAIIMWAGSIISSRGVTLIKEVKLKVAKASPGREVEVVKEEKTEKT*
Ga0180298_1012188	Ga0180298_10121883	F029758	MSDSVTKWHEIQESMPKKSKKSKNTSDKLNAVEHVWYPESDRWIYIERYASGYLGLNCMQGDEYEYFKKNWCEIDRGMSEFYDTMKTDLLKLRVDMSELEFIDKVMWIYFEATHRYDEYK
Ga0180298_1024607	Ga0180298_10246073	F015742	MDSKKAYEQLKEEIVDRESAYLCTELERTLDRIVNYTDPLDEAMFNKIKASAIKLLKEWHL*
Ga0180298_1036840	Ga0180298_10368402	F063711	DREYWLNCLAEYEEALKEEFLMQEGKGFNDNMIQLLKFEINECIKQLA*
Ga0180298_1037241	Ga0180298_10372413	F064214	MSRKSDLKVLVKASEGLAHALRETLDVLAEHEARIRRIEQELGSLSVESSIVEGAVGRRLS*
Ga0180298_1041590	Ga0180298_10415903	F085719	NGIKYDNYHCNYKDLLDGLDTVSFTKLSEQDMKNEIDHFLDKKQDLLHIQDLVHEARIDWYSNTYPGEYTGD*
Ga0180298_1049467	Ga0180298_10494671	F045994	MAELLTDEIIIEKLKTDGIMEEPDAPWLLEYIEAHYGGKLDTTSDYVDDNYTLKIYSESTADCYDIYWCTHEEKPYVSQDGYYYEDYAEWSDQAVQELASGADVW
Ga0180298_1052834	Ga0180298_10528343	F030400	MVVTNMKELCEYNRQKKLARRAQHVEIIKIYGECKGMGDKRYNIPQKSSFPKQYKAAFNKIWR*
Ga0180298_1061929	Ga0180298_10619292	F001740	MYNTNNPSNWSWSKAFAEMNKTVHQAEMTQQCINHVLDYPGEANGVFMSLNKTQQDDVYEILNQII*
Ga0180298_1067052	Ga0180298_10670522	F087209	MAQISSYPILDPQFGDKVLGSNTVDSAGNPVEGNPTVQYTLSSIKTLVDQNFIQQLETENTSSVALLQSGDALIFGGVDVTGNNVTYTANTGKVTFVTKGTYYIEQQYCVSGTPPGQIFPVFKTMANGSDQVGPTVIERYSPGASTDRKIVSISNIVNVLGG
Ga0180298_1072230	Ga0180298_10722302	F025034	MDSRKAYELMKEEYIDKEAAELCNQIENQLERIVSYDDGFLDDRTFNEIKKHAIKLLKEWHL*
Ga0180298_1072784	Ga0180298_10727841	F094519	MIGSSSWGSQTGGIGSIMGSTWSEKIIFDAQPDRVLSKYFLEFNDLMGNNDVTLVIPKIGDIDLMGGRTGNKEGIARVMTKFDTSDNITVSLTSADVKLGGCAISFETASATRVSILEMAHKQLVRQYLKTLETDANNLLENATVNATTGAGSVFGGSTVADNSALAGNV
Ga0180298_1073709	Ga0180298_10737092	F040581	MEFLEDGNYNGIRFMGNGNVYNGYLNQEQTWEKYRQWALKNIYDE*
Ga0180298_1081950	Ga0180298_10819501	F000352	TIKLTDNDCIFVHYVLRMYAQQTPGLDQEDKDEIREVAAKFK*
Ga0180298_1098678	Ga0180298_10986783	F032680	MNKYVNRIMDEVHDNFDRHFDDIDEKVWFLEYLIEKLQDELDYYQTFN