3300014833: Activated sludge microbial communities from Shanghai, China - wastewater treatment plant - influent sewage

Overview

Basic Information

• IMG/M Taxon OID: 3300014833
• GOLD Reference (Study | Sequencing Project | Analysis Project): Gs0118577 | Gp0137209 | Ga0119870
• Sample Name: Activated sludge microbial communities from Shanghai, China - wastewater treatment plant - influent sewage
• Sequencing Status: Permanent Draft
• Sequencing Center: Tongji University
• Published?: N
• Use Policy: Open

Dataset Contents

• Total Genome Size: 493408896
• Sequencing Scaffolds: 28
• Novel Protein Genes: 31
• Associated Families: 29

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
All Organisms → cellular organisms → Bacteria	3
All Organisms → Viruses → Predicted Viral	2
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Bacilli → Lactobacillales → Streptococcaceae → Streptococcus → Streptococcus pneumoniae	2
Not Available	11
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → Bingvirus → unclassified Bingvirus → Streptomyces phage ClubPenguin	1
All Organisms → cellular organisms → Bacteria → Spirochaetes	1
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Bacilli → Bacillales → Bacillaceae → Bacillus → Bacillus subtilis group → Bacillus atrophaeus	1
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales → unclassified Bacteroidales → Bacteroidales bacterium	1
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → unclassified Flavobacteriales → Flavobacteriales bacterium	2
All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria	1
All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Syntrophobacterales → Syntrophaceae → unclassified Syntrophaceae → Syntrophaceae bacterium PtaB.Bin038	1
All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → unclassified Burkholderiales → Burkholderiales bacterium 28-67-8	1
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes	1

Ecosystem and Geography

Ecosystem Assignment (GOLD)

• Name: Activated Sludge Microbial Communities From Shanghai, China
• Type: Engineered
• Taxonomy: Engineered → Wastewater → Activated Sludge → Unclassified → Unclassified → Activated Sludge → Activated Sludge Microbial Communities From Shanghai, China

Alternative Ecosystem Assignments

• Environment Ontology (ENVO): Unclassified
• Earth Microbiome Project Ontology (EMPO): Free-living → Non-saline → Water (non-saline)

Location Information

• Location: China: Quyang, Shanghai
• Coordinates
  • Lat. (^o): 31.3
  • Long. (^o): 121.5
  • Alt. (m): N/A
  • Depth (m): N/A

Associated Families

Family	Category	Number of Sequences	3D Structure?
F003605	Metagenome / Metatranscriptome	477	Y
F010914	Metagenome / Metatranscriptome	297	Y
F021533	Metagenome / Metatranscriptome	218	Y
F027486	Metagenome	194	Y
F040068	Metagenome / Metatranscriptome	162	N
F044576	Metagenome / Metatranscriptome	154	Y
F045728	Metagenome / Metatranscriptome	152	Y
F050485	Metagenome / Metatranscriptome	145	Y
F054846	Metagenome / Metatranscriptome	139	N
F055725	Metagenome / Metatranscriptome	138	Y

Associated Scaffolds

Scaffold	Taxonomy	Length
Ga0119870_1002633	All Organisms → cellular organisms → Bacteria	7480
Ga0119870_1011253	All Organisms → Viruses → Predicted Viral	3426
Ga0119870_1017543	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Bacilli → Lactobacillales → Streptococcaceae → Streptococcus → Streptococcus pneumoniae	2629
Ga0119870_1020737	Not Available	2377
Ga0119870_1026713	All Organisms → cellular organisms → Bacteria	2038
Ga0119870_1033863	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → Bingvirus → unclassified Bingvirus → Streptomyces phage ClubPenguin	1761
Ga0119870_1036983	All Organisms → cellular organisms → Bacteria → Spirochaetes	1666
Ga0119870_1049815	Not Available	1376
Ga0119870_1055264	All Organisms → Viruses → Predicted Viral	1287
Ga0119870_1057998	Not Available	1248

Sequences

Scaffold ID	Protein ID	Family	Sequence
Ga0119870_1002633	Ga0119870_100263312	F060985	MSNIDEKAKNNFTIEMRIFENYEKVKHEIIKAIDFLRHSETPMGMCKIFDNQDHGFWHWVIKPGFKPERFGITNIWFLLEHGTYFCSNEYLLSNGKLHTIKGIQWVEIPLSLVFDNRVFGYWFPPYKKYIPHRIRVLRLALKDLERIKEEYGKD*
Ga0119870_1011253	Ga0119870_10112535	F054846	MTTENLNLSELGLGDNSQSAINEKMPRRGAEGRGQSRESRKSLSEHDTARKPERVPMYAQRTMIDTTLIPEGFHGHWVSNNPAGRIDMLLRAGYDFVTKDQNVYSSHVTENGVDSRVSKSGSDGVTLYLMIIPLELYEADQEAKAEKAKEQTATIFGKQRNDPDFFSRDENGRDTPASRGIGRVTTNDFVL*
Ga0119870_1017543	Ga0119870_10175433	F074867	MSNRGIVELTLNGEVFELHPTFENLDKLETVLNKGAVGFLQNDLSSGMFKTGDVVSIIQVCAIPPRGAKRPSWWNREGIGRAVLNEGLLNCTRVVVEFLTKALTAGSETDIKTVGADEDDEKK*
Ga0119870_1020737	Ga0119870_10207373	F050485	MSLKEMAPRYQVGDRVSIDKSVTTMPALPAYVGVVQNVVPSYVDKTVGYNLALDGDPRPGRLWFFLQNQLTPA*
Ga0119870_1026713	Ga0119870_10267132	F080163	MKTIKFLQESFETKERFQQEISFKYSYNQNTVESIDFRINQRNIRYFYEAMQNFENSLVNEFKEKKNNFCDAKQFLESINDFDKIIFVIITYMKSYFDFCKDYSKISLHIHLVQFDFTTSVLIQGFYNYSHRDLSFSTKLESEVLNSEIELLQEKLDLIREEICELIGVDPNLEKQGHEDNYIFNLNINSDNQIGFLLQATEL*
Ga0119870_1033863	Ga0119870_10338631	F003605	MAVGDAASAAGYATVPETGEEGRVRWGARELNRTRDYIAAVKALIPGTKTAYREAAGISSGTAHPTGGNDGDIY
Ga0119870_1036983	Ga0119870_10369835	F084812	MAKMSSLKLDNWSKGLLISIISKAISGDREMTPDDIEKLKEIKKLL
Ga0119870_1039841	Ga0119870_10398412	F071823	LVKNLPAIQETLVRFLGQEDPLEKGKATHSSILAWRIP*
Ga0119870_1049815	Ga0119870_10498152	F040068	MARSVPKCKRAAYVYDRDFIVVDDISGVLKMRSECAIDGYGFLSSQGDIRNPQEIPPIINEQMAAWPDPRPIGQPVFVPSPDYQYFIFNYFIVSVQSRATTFDATATVGLNAPIASMDWYVDDVYVISGLVPTVTMSGGVHTISVLITDDYGNQQTFSFEYEQGVDLSFNFITGEYFYFIDGVKFDFIG*
Ga0119870_1049815	Ga0119870_10498153	F082613	LNQQTVTVAGPNTTTKDAGIYATKIISVTTSASASNILIGHTNVGFAPWKVIPSRGVSSTTGASIGIDGTANITLQTTFANIADNAIFAGTFDVFSHSYLAALTASAFDTVDTREIGVRLKFNSWSSGNVRLDLSVSAKG*
Ga0119870_1055264	Ga0119870_10552642	F090323	AINELNANFERLFNNQQAAPTPTQLPTQAQEVPTQAQEVPTQAQEVATQAQEVALLPDVAKTMNRTREDLQAMCLAATKRNAANRDIIKAIMLSNFEARKTGDLADNQVDMCYAMIAEATQDD*
Ga0119870_1057998	Ga0119870_10579982	F076005	MTGEIMKHFKIKVQYLNGNEFCFECDAKTNWQAAALARIKGKELGLGGAMDVKETIVEEA
Ga0119870_1066280	Ga0119870_10662802	F055725	MAFFNGEGIDLPTITKLAEAGVSLNGMATITGHSRTGIKRALERNKIPFATHVRERFVVVDGVLTSLGDACNAQGFSRKAMYAWRVKRGLNEQEGFDAYIVYQQSKRTIDKPILTFKNATVIYKKERYTLTEISDKLKLNKQRFEVFMRQNRYAQNAFERYCYMRGL*
Ga0119870_1082289	Ga0119870_10822891	F058934	MRQFSYPNSQFTNILGGASIGWKLNVYDTGTTDYASIYSNLAQTTPTANPVIADADGFLASFYWTGTIDVVLTDENDNIIDSANGIQDLVSTINAVVVAGNISLPYGAASGSGDTITATLPITSDFSDGGVFVVRANAANTGASNTPNLQINSYASRRIK
Ga0119870_1082289	Ga0119870_10822892	F087089	YMDNHLRTLNNAKMIEFIENKANRELIKGIFGDTVLKKFDRVLVDAKRDRLGSTLGGVSGAQTYGRGATDKIMSQSIWKLDGAGASLGALLGTMLGGVGTMGGALGGAATAHTVKVLNMKQNALTSKAMLDPKYAAELLKKQIAPTQYKRGALESLKKNLAPSTIPVQDKK*
Ga0119870_1088690	Ga0119870_10886902	F081921	MNLTPQTEPQEINLQERAVETPSDNSLPAAQVIDDQSNDAEFNSAPRFVP*
Ga0119870_1089556	Ga0119870_10895561	F074964	MITKKNINKLQNAVIKENASNLVGAVNLYNALFANGADLKAICKTLEIPAEYAVKVAALAKDKKRLVAVCSQMLPKVGDTFVKFSLYSKVYKDNKVDKEKGIEAKTADWCADNVVYGSEYKSFGFTTAESLETKKSTKWLIKENDEYKATYVAVKIKSYSIRTVAKCVSEYLAHESNQQ*
Ga0119870_1103097	Ga0119870_11030972	F045728	MSLASVPRESSGQKERPLMAAQAAPAPAGDSLLVSRFLPTR
Ga0119870_1104147	Ga0119870_11041472	F102167	MDINQIKTYLPSGWDVVDLIDHGIIDLDIMNGKMMGEYVAVLMIKSYDKITESHNLTTFSFHDKDMEKLRMLIGNAIMAVGYRNNPLTGDGNTAIK*
Ga0119870_1116032	Ga0119870_11160323	F075867	HFLQYDAATFENEGFKTLNGRISQLALEPRFWSVSVKVITENFEGTEKIKDHFNFKTSERCKLSDLREQVKKEVLDKDDYLPVCTQCLVTARVMM*
Ga0119870_1131651	Ga0119870_11316511	F021533	MKTIAATVINEVVTPIEPMPSNAKLILFNGTEYVIYEDGDELPIIE*
Ga0119870_1148832	Ga0119870_11488321	F097376	VSPKKNKTATDVVVQKKQAKTGPVELDLAELKKVSGGLPKGGWERMK*
Ga0119870_1155448	Ga0119870_11554481	F097376	MKKAVSPKKNKTASDVVEQKKQAKSGPVELDLADLKKVSGGLPKGGWSPAK*
Ga0119870_1162141	Ga0119870_11621412	F044576	MENEQALEEALLVEDLHTGELVVERANGEKWVLDAKKGWCPWGYEFEGKRVGLRFGEVTSILVNDRGEQFEFWTDKQIE*
Ga0119870_1164773	Ga0119870_11647731	F093883	MMEEDKDIKKEIRDYLKEEADTHIRHWIAIKRESKRLYSDIEDRTKKIALKSSSLIKEEDFVVLHEMTHKIQMLNIEAVKVNSRLMFIIQLATSFGMDLDLDTTYASTAKSIIEDRTSGFVFYDDKERLRYADKELEDMFHDMSVTEVSKIGVVQSYKLLMKQYNEFKDIIKNNINSI*
Ga0119870_1167233	Ga0119870_11672331	F068773	MTTEKLNLSELGLGDNSQAAVNEKLPRRGAEGRGQGRESRKSLSEHDTARKPERVPMYAQRTMIDTTLIPEGYHGHWVSNNPAGRIDMLLRAGYDFVTKDQNVYSSHVTENGVDSRVSKSGSDGVTLYLMIIPLELYEADQE
Ga0119870_1181278	Ga0119870_11812781	F069722	MRVRLTAELDPKAKRERPALKKGAAHEKALGHKSGAVLQK*
Ga0119870_1182857	Ga0119870_11828571	F085718	MVIEFDFEIYKNGDYDKVYLRNGKEPRVLCDNGKGDRPIVVMVEDDNANDYIILRYNETGRRNINGQSSLDLMLSVKLPELELWVVVISYMDNKDKRQKMVLPNFFSRNIGGNIYLQGSSKSNVSYYVGRLEEDGCFDELCEKIRVKRDRIYNMEIISLSDDETA
Ga0119870_1222314	Ga0119870_12223142	F010914	MIYNILVEKNGKFVATGETVECEFEETQAVIGELQLEHGCCCALEAVSE*
Ga0119870_1224705	Ga0119870_12247051	F027486	ADALGVRIQLGEGRRNGRERVFWLDGYRQLTGYTTKSDGSPFRHEDAVRNIDKALTGIEDDRKIMAGLTIAERFARVLAEFREMKPQARMIGEVRLPGGDGGHCFFMADYEGGVHLHGFGQDVARGKAEWRHGETMAAQIGRFCDALEADFNAGAFASVVPRANHVDPHAENAE*
Ga0119870_1227327	Ga0119870_12273271	F045728	MQLASAPRESSGQNERPSMAVQAAPAPAGGSLPGA