3300014806: Human fecal microbial communities from obese patients in Germany - AS66_0

Overview

Basic Information

• IMG/M Taxon OID: 3300014806
• GOLD Reference (Study | Sequencing Project | Analysis Project): Gs0121297 | Gp0151560 | Ga0134388
• Sample Name: Human fecal microbial communities from obese patients in Germany - AS66_0
• Sequencing Status: Permanent Draft
• Sequencing Center: University of Hohenheim
• Published?: N
• Use Policy: Open

Dataset Contents

• Total Genome Size: 151373636
• Sequencing Scaffolds: 8
• Novel Protein Genes: 8
• Associated Families: 7

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae → Ruminococcus → Ruminococcus bromii	1
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae	1
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Coriobacteriia → Coriobacteriales → Coriobacteriaceae → Collinsella	1
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Eubacteriales incertae sedis → Gemmiger → Gemmiger formicilis	1
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Lachnospiraceae	1
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes	1
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae → Faecalibacterium	2

Ecosystem and Geography

Ecosystem Assignment (GOLD)

• Name: Human Fecal Microbial Communities From Obese Patients In Germany
• Type: Host-Associated
• Taxonomy: Host-Associated → Human → Digestive System → Large Intestine → Fecal → Human Fecal → Human Fecal Microbial Communities From Obese Patients In Germany

Alternative Ecosystem Assignments

• Environment Ontology (ENVO): Unclassified
• Earth Microbiome Project Ontology (EMPO): Host-associated → Animal → Animal distal gut

Location Information

• Location: Germany
• Coordinates
  • Lat. (^o): N/A
  • Long. (^o): N/A
  • Alt. (m): N/A
  • Depth (m): N/A

Associated Families

Family	Category	Number of Sequences	3D Structure?
F047126	Metagenome	150	N
F055715	Metagenome	138	N
F067845	Metagenome	125	N
F087334	Metagenome	110	N
F087335	Metagenome	110	N
F092228	Metagenome	107	N
F099269	Metagenome	103	N

Associated Scaffolds

Scaffold	Taxonomy	Length
Ga0134388_1000003	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae → Ruminococcus → Ruminococcus bromii	477613
Ga0134388_1000290	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae	47175
Ga0134388_1000581	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Coriobacteriia → Coriobacteriales → Coriobacteriaceae → Collinsella	28420
Ga0134388_1001403	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Eubacteriales incertae sedis → Gemmiger → Gemmiger formicilis	12240
Ga0134388_1001665	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Lachnospiraceae	10504
Ga0134388_1002557	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes	7141
Ga0134388_1003782	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae → Faecalibacterium	5053
Ga0134388_1004611	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae → Faecalibacterium	4252

Sequences

Scaffold ID	Protein ID	Family	Sequence
Ga0134388_1000003	Ga0134388_1000003296	F092228	MKKKCTLVLISVLTVACIVSAYLLFFYNPSFNMVYDSDTDSYFNNSYLSYNDGTLAAADYRKTKVTAYDSKNNSTVNLPSNGCLINDNLFYINGNKLCCLDTTTNTRKIIDTDCRSFVCNNEVIAYTKNDSVILKDSDTLENIGDIKFDNQIYYINISDGNLYIAERIFEDKTDEYGYSFKVGKQYIFKKYDLKSCKLLKSKNANYVNGIRYVTVCQDTFWFFCDETQTVNNVCLDKDVNYPTIQHPDVKFITSNNDCVYYISEKTESAIICKTVESPYNGIWKLEVGSNKPVKIADKCDCDELLATKNFLYCYTINYILPRGVANLWVKGYLIDQLAIS*
Ga0134388_1000290	Ga0134388_100029038	F047126	VYLKTKKMTNISQTQAGFKSKSLGILCGFQGFLTQNPAVLVETDDIFNVSDTPYGFSGLNTLRAAGVPNPPPPFAQRFIACFCSQTAAASQSKIAYILSSLESPCILCSLLRYFHILSKKLQKTC*
Ga0134388_1000581	Ga0134388_100058111	F099269	VGELLLLDDLGDRASGASVLASATGDAGVLVGDGSDVLELQNASGAGVDANATSDALVGINYGMSHGSFLSVDRRYRRCAPV*
Ga0134388_1001403	Ga0134388_10014032	F087334	MASRYPFVGAAAHLFPKNAIKMLSFSTSGKGSILLYPFRSSPLLAITFLYHLKDFFLYRAAALFEYREKHQ*
Ga0134388_1001665	Ga0134388_10016651	F055715	LTKANKFDKMNELLIERMAKKFERASKNKLKKFLTNERFCDKINELIRVGTAKILDN*
Ga0134388_1002557	Ga0134388_10025577	F055715	LTKANEFDRINELLIERTAENKTFSGSSKELQKNKLKKFLTNEKFCDKINELIRVGTAKILDN*
Ga0134388_1003782	Ga0134388_10037826	F087335	MLELYFNDGNFLPESREEEQSAETVLNIMLAGKTTDTEMCIWPCFYHAPMCKGVLINMDDGTTLRIKPILNKEGEPELLIGCVTGETVGEVYQWVSNYD*
Ga0134388_1004611	Ga0134388_10046111	F067845	MKHWKNLLVCLLAGVLALGMLTACSGLGSVNTGTDAEKAAELAQQLGVVHTQELDNTAKAVAEWFVQEPDSLRVSGLDLVYTVALDADNNMSHTDDLNAFLYWYGCYGVPEDVTVALLLDDSTAMTAQLYAPQADSAAAELLDDAAGHSELGAAFIDYNGTAYVVAVFR*