3300014794: Human fecal microbial communities from obese patients in Germany - AS50_6

Overview

Basic Information

• IMG/M Taxon OID: 3300014794
• GOLD Reference (Study | Sequencing Project | Analysis Project): Gs0121297 | Gp0151620 | Ga0134448
• Sample Name: Human fecal microbial communities from obese patients in Germany - AS50_6
• Sequencing Status: Permanent Draft
• Sequencing Center: University of Hohenheim
• Published?: N
• Use Policy: Open

Dataset Contents

• Total Genome Size: 129911592
• Sequencing Scaffolds: 6
• Novel Protein Genes: 6
• Associated Families: 6

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae → Faecalibacterium → Faecalibacterium prausnitzii	1
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae → Faecalibacterium	2
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes	1
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Lachnospiraceae	1
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → unclassified Clostridia → Clostridia bacterium	1

Ecosystem and Geography

Ecosystem Assignment (GOLD)

• Name: Human Fecal Microbial Communities From Obese Patients In Germany
• Type: Host-Associated
• Taxonomy: Host-Associated → Human → Digestive System → Large Intestine → Fecal → Human Fecal → Human Fecal Microbial Communities From Obese Patients In Germany

Alternative Ecosystem Assignments

• Environment Ontology (ENVO): Unclassified
• Earth Microbiome Project Ontology (EMPO): Host-associated → Animal → Animal distal gut

Location Information

• Location: Germany
• Coordinates
  • Lat. (^o): N/A
  • Long. (^o): N/A
  • Alt. (m): N/A
  • Depth (m): N/A

Associated Families

Family	Category	Number of Sequences	3D Structure?
F026489	Metagenome	197	N
F052660	Metagenome	142	N
F062845	Metagenome	130	N
F081354	Metagenome	114	Y
F087335	Metagenome	110	N
F090514	Metagenome	108	N

Associated Scaffolds

Scaffold	Taxonomy	Length
Ga0134448_1001374	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae → Faecalibacterium → Faecalibacterium prausnitzii	10848
Ga0134448_1002317	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae → Faecalibacterium	6779
Ga0134448_1002323	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes	6762
Ga0134448_1003751	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae → Faecalibacterium	4197
Ga0134448_1008068	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Lachnospiraceae	1970
Ga0134448_1021925	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → unclassified Clostridia → Clostridia bacterium	792

Sequences

Scaffold ID	Protein ID	Family	Sequence
Ga0134448_1001374	Ga0134448_10013745	F090514	MNLRIHALKKASRQRPGVKIAAARFFSILYYPFCAKRSSFFQQNVQPRGNFFANRPIFVYFADVLPRLTGAKWFVILLTIVPAGSRTRAGSSLPLIPASNIF*
Ga0134448_1002317	Ga0134448_10023173	F026489	VVAEGCSLLVAKENQKTTSDFDALEPRKRGCSPLLTPKRRATPEKTEDSRLFGVKIF*
Ga0134448_1002323	Ga0134448_100232310	F062845	MEKTPFILHEKFRSDNNEQRKEHFQKKFERYIVDELSNAAPSKSCA*
Ga0134448_1003751	Ga0134448_10037514	F087335	XXXERKTDMIELYFNDANLLPENREEEQYAEAALNSILAGKTADVEMCIQPCFYNAPLHKGLLYNLDDGTTLRIRPILNEAGEPELLIRCVTEESVETVYQRGANYD*
Ga0134448_1008068	Ga0134448_10080682	F052660	MCILRVLSENTPEKIGQERAGTEWTVVKSKIRLCIRNRSYGQFLHGGILMGIVLPIPSHRAKSHDFACWWPATAGHSRSADALPGKSNS*
Ga0134448_1021925	Ga0134448_10219252	F081354	LVRENQQSSAHNFVKDFSPIFLKSSRQDPLKKGAVTEILLEYGKTEVQILFEPLQAAISSMELPKNFENKKLPNTLR*