3300014716: Maize phyllosphere microbial communities from California to study drought stress - PHYLLO11_watered_CA_Berkeley

Overview

Basic Information

• IMG/M Taxon OID: 3300014716
• GOLD Reference (Study | Sequencing Project | Analysis Project): Gs0121334 | Gp0152698 | Ga0135282
• Sample Name: Maize phyllosphere microbial communities from California to study drought stress - PHYLLO11_watered_CA_Berkeley
• Sequencing Status: Permanent Draft
• Sequencing Center: J. Craig Venter Institute
• Published?: N
• Use Policy: Open

Dataset Contents

• Total Genome Size: 2392627
• Sequencing Scaffolds: 38
• Novel Protein Genes: 40
• Associated Families: 25

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
All Organisms → cellular organisms → Eukaryota → Viridiplantae → Streptophyta → Streptophytina → Embryophyta → Tracheophyta → Euphyllophyta → Spermatophyta → Magnoliopsida → Mesangiospermae → Liliopsida → Petrosaviidae → commelinids → Poales → Poaceae → PACMAD clade → Panicoideae → Andropogonodae → Andropogoneae → Tripsacinae → Zea → Zea mays	15
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Bacilli → Lactobacillales → Lactobacillaceae → Lacticaseibacillus → Lacticaseibacillus paracasei	1
Not Available	16
All Organisms → cellular organisms → Eukaryota	2
All Organisms → cellular organisms → Eukaryota → Viridiplantae → Streptophyta → Streptophytina → Embryophyta → Tracheophyta → Euphyllophyta → Spermatophyta → Magnoliopsida → Mesangiospermae → Liliopsida → Petrosaviidae → commelinids → Poales → Poaceae → PACMAD clade → Panicoideae	1
All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Enterobacterales → Enterobacteriaceae → Salmonella → unclassified Salmonella → Salmonella sp. hn-f5	1
All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria	1
All Organisms → cellular organisms → Eukaryota → Viridiplantae → Streptophyta → Streptophytina → Embryophyta → Tracheophyta → Euphyllophyta → Spermatophyta → Magnoliopsida → Mesangiospermae → Liliopsida → Petrosaviidae → commelinids → Poales → Poaceae → PACMAD clade → Panicoideae → Andropogonodae → Andropogoneae → Tripsacinae → Zea	1

Ecosystem and Geography

Ecosystem Assignment (GOLD)

• Name: Maize Phyllosphere Microbial Communities From Texas And California To Study Drought Stress
• Type: Host-Associated
• Taxonomy: Host-Associated → Plants → Phylloplane → Unclassified → Unclassified → Maize Phyllosphere → Maize Phyllosphere Microbial Communities From Texas And California To Study Drought Stress

Alternative Ecosystem Assignments

• Environment Ontology (ENVO): Unclassified
• Earth Microbiome Project Ontology (EMPO): Host-associated → Plant → Plant surface

Location Information

• Location: USA: Berkeley, California
• Coordinates
  • Lat. (^o): 37.53128
  • Long. (^o): -122.7598
  • Alt. (m): N/A
  • Depth (m): N/A

Associated Families

Family	Category	Number of Sequences	3D Structure?
F002471	Metagenome / Metatranscriptome	556	Y
F002994	Metagenome / Metatranscriptome	514	Y
F003406	Metagenome / Metatranscriptome	488	Y
F007409	Metagenome / Metatranscriptome	351	Y
F009131	Metagenome / Metatranscriptome	322	Y
F010678	Metagenome / Metatranscriptome	300	Y
F013401	Metagenome / Metatranscriptome	271	Y
F014592	Metagenome / Metatranscriptome	261	Y
F015450	Metagenome / Metatranscriptome	254	N
F018877	Metagenome / Metatranscriptome	232	Y

Associated Scaffolds

Scaffold	Taxonomy	Length
Ga0135282_10050	All Organisms → cellular organisms → Eukaryota → Viridiplantae → Streptophyta → Streptophytina → Embryophyta → Tracheophyta → Euphyllophyta → Spermatophyta → Magnoliopsida → Mesangiospermae → Liliopsida → Petrosaviidae → commelinids → Poales → Poaceae → PACMAD clade → Panicoideae → Andropogonodae → Andropogoneae → Tripsacinae → Zea → Zea mays	1593
Ga0135282_10063	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Bacilli → Lactobacillales → Lactobacillaceae → Lacticaseibacillus → Lacticaseibacillus paracasei	1473
Ga0135282_10114	All Organisms → cellular organisms → Eukaryota → Viridiplantae → Streptophyta → Streptophytina → Embryophyta → Tracheophyta → Euphyllophyta → Spermatophyta → Magnoliopsida → Mesangiospermae → Liliopsida → Petrosaviidae → commelinids → Poales → Poaceae → PACMAD clade → Panicoideae → Andropogonodae → Andropogoneae → Tripsacinae → Zea → Zea mays	1124
Ga0135282_10118	Not Available	1112
Ga0135282_10194	All Organisms → cellular organisms → Eukaryota → Viridiplantae → Streptophyta → Streptophytina → Embryophyta → Tracheophyta → Euphyllophyta → Spermatophyta → Magnoliopsida → Mesangiospermae → Liliopsida → Petrosaviidae → commelinids → Poales → Poaceae → PACMAD clade → Panicoideae → Andropogonodae → Andropogoneae → Tripsacinae → Zea → Zea mays	932
Ga0135282_10246	All Organisms → cellular organisms → Eukaryota → Viridiplantae → Streptophyta → Streptophytina → Embryophyta → Tracheophyta → Euphyllophyta → Spermatophyta → Magnoliopsida → Mesangiospermae → Liliopsida → Petrosaviidae → commelinids → Poales → Poaceae → PACMAD clade → Panicoideae → Andropogonodae → Andropogoneae → Tripsacinae → Zea → Zea mays	846
Ga0135282_10324	All Organisms → cellular organisms → Eukaryota → Viridiplantae → Streptophyta → Streptophytina → Embryophyta → Tracheophyta → Euphyllophyta → Spermatophyta → Magnoliopsida → Mesangiospermae → Liliopsida → Petrosaviidae → commelinids → Poales → Poaceae → PACMAD clade → Panicoideae → Andropogonodae → Andropogoneae → Tripsacinae → Zea → Zea mays	767
Ga0135282_10381	All Organisms → cellular organisms → Eukaryota → Viridiplantae → Streptophyta → Streptophytina → Embryophyta → Tracheophyta → Euphyllophyta → Spermatophyta → Magnoliopsida → Mesangiospermae → Liliopsida → Petrosaviidae → commelinids → Poales → Poaceae → PACMAD clade → Panicoideae → Andropogonodae → Andropogoneae → Tripsacinae → Zea → Zea mays	726
Ga0135282_10411	All Organisms → cellular organisms → Eukaryota	704
Ga0135282_10427	Not Available	693

Sequences

Scaffold ID	Protein ID	Family	Sequence
Ga0135282_10050	Ga0135282_100502	F002471	CKDFDVDACSDHLASISKLTEELASLNAQLKTSKNDFDKLKFARDAYTIGRHPSIKDGLGFKREAKNLTSHKAPIPAKEKGKAPMATSAKKNHAFLYHDRKNSRNAFRSYDAFDSHAYDSYAMTASSSHVVHDRKVGRRNVIHNMPRRNVVNAHRKVHGPSTIYHALNASFAICRKDRKIVARKLGAKCKGDKTCIWVPKDICTNLVGPNKSWVPKSQA*
Ga0135282_10063	Ga0135282_100631	F038003	VGGRASSAVERIDAPDAPTEGTPDVDLAFKTEASAVPPRHADPEQEDDAGALAESLQDVALEPEMTAQPVPDVTTSLLVDQKVTTNSHLASFRLGLNPPNDLVLAGALIEASATPLRFCMRSPWDRLTDVSTYGPSGSEEDDDPSIGWDFSGLGNPSAMRDFMTACDYCLSDRSDGSRSLGDESCGPSRECFHIELGDPTEGNHLGMPEDGDLPRPVPRADIPRELAVVPAPAGGFAPRPGGGG
Ga0135282_10089	Ga0135282_100891	F099086	LFAICNSNVVVSCLTSDSAKTSSGPQPKGDDEIKKMAEDIMDEVVNRLLNEAAEVVLRED
Ga0135282_10114	Ga0135282_101141	F075851	MARVRSTARVEREGDETEASETVPISEAMQRSGLVTAEEMPAAEANPTAAEGEGNIEETDSEDDYRIAMPSKPSHLDFGKSTVSKVDLAKMVKADFFSEDQKKLLRFG
Ga0135282_10118	Ga0135282_101181	F029075	LVAAQVQDFGPAHATATTGFLAASTAEGGNECGGSVSEFFDFTDSGSSVEWTEESSEEDLDYFAALDEAAAEAALHAADAPGVPGPSTGHRRRRAVAKRRISAEEGARLRVSRVGRQELLSLPAVSGVGEGELRSLFAGEELRIMLFNYREMGIIPKVEPM*
Ga0135282_10194	Ga0135282_101941	F015450	SVQSMLLSKALKMQQDLEDKKHEAIIENLESKIKEQSAIIEKKDFELQSTEGLLAETEAKILELNSKLINQSKQFDQEKLELNSKLKAEVQTSSELKKALTSLQDKCLNFGNNCIGRLKKIFYSVGASSGKFNPSAENLPQAFDHIEAEIEELDEVIAGHGDFCAWVASRGTAAAFLKAGCEHGKVVNRPNFTLSSSILDDMPDLARSISNRFIKMVWTKGGREKAGDEARSHLEPVRNDISCLPFPLGLILMIP*
Ga0135282_10246	Ga0135282_102462	F018877	GGKFFTDIWNDGGRGMAQEIIQRSEKGIHDARKVAEAAERSTEPERQLGTN*
Ga0135282_10324	Ga0135282_103241	F038003	STLAKGLLGVTLVPETTVQSVPDVTSSPPVDQEVPTDSHLTPLGFSLDPPSGFALADALVEASPNPLGYRMRSPWDRLTDVSTYGPSGSEEDDEPDFCWDFSGLGNPSAMRDFMTACDYCLSDCSDGSRSLGDEDCGPSRECFHVDLGGPSEGNHLGMPENGDLPRPVPRVDILRELAVVPVQAGGHDPQLEQIRGVQARLDEGAGTLEPIRRDIGQEWAGQPPAGEVRHLPQGLQHRIADDVRGRLRPASRGGG
Ga0135282_10381	Ga0135282_103811	F033754	LTEVGLLKERGLTAEAVVTDFVFKNIQPLKDRAYPEYLYRGLADSTRVTNRRIPSVDLVSRLEMILRGKVSNVGAPVAYSAWNLPSPKAFTLFVSNPPVTDSNLGLRVRPSAEEVRTLVASLGEIPDDERQIYFEVPLNPSDADINDMLDLLAEDSSDAAPDGTLAVVPLPEVDATLDVPKPVSTRPRRPSRTSQPEPPADEQKKKRRRLRRVSSFDEDASTLAPAAEEMTATGLAGIGP
Ga0135282_10411	Ga0135282_104111	F009131	PSNQWANHLEETGKELRSAKKKCFDKSIECVKKIKTSFASVGAFSQEENFIRGNPEGPLEWINHEAEAFEEILSSRGDICAFSGARGIATILEGKGCEHVKILSQSEATLSTEDIKDPSAEASAVGGKFFTDIWDNGGREMAQEIIQKSEKGIHEARKVAEAAEKNAEPEGQIGTNE*
Ga0135282_10427	Ga0135282_104271	F009131	AKEERILEETKRELSDQLANHLELSVKELRASQRKCYVKSIECVKKIKSSFASVGAFSSEENFSRGNPEGPMEWISHEAEAFEEILNSRGDICAFLGARGIAAVLERKGCEHVKSLAQSEATLSSEDIKDPSPEASMVGGKFFTDIWDNGGRELAQEIIQRSEKGIHDARKVAEAAEKSTEPEGHIGIN*
Ga0135282_10447	Ga0135282_104471	F009131	MECVKKLKASFASVGAFSSEENFTRGNPEGPIEWINHEAEAFEEILNSRGDICAFSGARGIATILEKKGCEHVKILAQSEAGLSFEDARDPSAEASMVGGKFFTDVWDNGGREMAREIIQKSEKGIHDAREVAEAAEKSAEPEGQIGIN*
Ga0135282_10460	Ga0135282_104601	F062643	MVVAQTLDQGVTLEGSVPAGLALGFVECTELVPTGLLQAASGGGLAPGYQLISPDLGIPSFFSNLQVLCCTLA*
Ga0135282_10493	Ga0135282_104931	F082256	LENYLEKSVEELRASKERCFEKSLGCMEKIKASFANVGAYSNEDNFIRGDPEGVIEWISGEAEDFEEILRDRGDVCAFSSARGISAILEKVGCAHVKTQAQAEAAFSVDDKKDPSAEASLMGGKFYTDIWANGGREMAHEIMNKVKKILTTLEKQQKN*
Ga0135282_10528	Ga0135282_105281	F096762	TEAATAEDVNLESTIEDINKILTDMAAEEAATTAEETMATVPGKGKEIAEDTSDDEAYSFQNLVGQKLSKAEKEELKEYAKSCGYKPGALLFGGIDDEKLGCIRDSAGAKVIGTLSKSIGFPKLETDISRYRRQHIVGSLFYSNFKVNILLSNFYCFLIMAIFFNEGCLFAEHASKQSFEDAARSRR*
Ga0135282_10569	Ga0135282_105691	F038003	TSPLVDQKVPTDSHPTLFRLGLNPPSDLALAGALVEASATPLGFRMRSPWDRLTDVSTYGPSGSEEDDDPSICWDFSGFGNPSAMRDFMTACDYCLSDCSDGSRSLDDEDCGPSRECFHVELGDPSEGNHLGMPEDGDLPRPVPRADIPRELAVVPVPAGGHDPQLEQVRGAQARLDEGAGALEPIRRDVGQAWAGQPPAGEIRHLPQ
Ga0135282_10640	Ga0135282_106401	F007409	MSEEKKVAAEMKLSLSEEMHLGFLESIAKTNTEKITREILEGLSEDTGDSDSYDADSGGEDSEDRPWRPSHSVFGKSTIGQSHLENMRGRYF*
Ga0135282_10653	Ga0135282_106531	F015450	SNLKKSLTSLQDKCLNFSNNCIQQLKKIFYSVGASSGKFTPSDEDLPKAFDHIEAEIEELDEVIAGHGDFCAWVASRGTAAAFLKAGCEHGKIVNRPNFALSPSILDDIPDLARSISNRFIKMIWTKGGREKAGDEARSHLEPVRNHTLYLPSPSHLIFTRDTLIHVG*
Ga0135282_10697	Ga0135282_106971	F046965	DSHARIDELNASIASLRNENEKLIAKAKDFDVCNTTISDLRTKNDLLHAKVIELKSCKPSTSTIEHVSICTRCRDINVDAIHDHLALIKKQNDHIAQLNAKIREHDLENEKFKLARSMLYNGRRPGIKDGIGFQRGDNVKINAPPKNLSNFVKGKAPMPQDNEGYILYPAGYPENKIKKIHSRKSHSGPNHAFMYKG
Ga0135282_10706	Ga0135282_107062	F013401	MAKDGKRKKVKSNSSTKYESSSDDNASGEEDNLRILFANLNMEQKEKLNELISAIHEKDDLLDSQEDFLIKENKKHVKVKNAYALEIEKCEKLSSELSTCREMIDNLRNENASLNAKVDSHVCNISIPNPRDNNDDLLARIEELNISLASLRVENDNLIAKAKDFD
Ga0135282_10739	Ga0135282_107391	F046965	VSIPNPRDNNDDLLARIEELNISLASLRVENENLIAKAKDFDVCKVTISDLRDKNDILHAKIVELNSCKPSTSTIEHVTICTRCRDVDVNAIHDHMALIKQQNDHIAKLDAKIAEHNLENEKFKFARSMLYNGRRPGIKDGIGYQRGDNVKLSAPPKRLSNFVKGKAPMPQDNEGYILYPVGYPEDKIKKIHSR
Ga0135282_10762	Ga0135282_107622	F010678	LVEEIDTAAPEAPSKIYDYIVRHASGKKLSEEEIFEANHYARELKYPKGALVFNGTDEDDFLYCLPDNKELSFCREMARSMGFPKLEAGLCAMTKDDLADSLAYNSLKV*
Ga0135282_10768	Ga0135282_107681	F013401	SSSDDNASSEEENLRTLFANLNMEQKEKLNELISAIHEKDDLLDSQEDFLIKENKKHVKVKNAYALQVEKCEKLSSELSTCREMIDNLRNENASLNAKVDSHVCNVSIPNPRDNNDDLLARIEELNISLASLRLENENLIAKAKDFDVCKVTIADLRDKNDILRAKIVELNSCKPSTSTIEHVTICTRCRNV
Ga0135282_10769	Ga0135282_107691	F014592	NKKLKASFARVGAFSSEENFTRGNPEGPIEWIDHEAEAFEEILNSRGDICAFSGARGIATILEKKGCEHVKILAQSEAALSFEDARDPSAEASIIGGKFFTDIWDNGGREMAGEIIRRSEKGIHDAREVAEAAEKSAEAEGQLGIN*
Ga0135282_10804	Ga0135282_108041	F032187	FMVCNSNISISSLPSEPAELSPGPHTKGDDEIKQMAEAIMDRVVDQLLNEAAEVVLKED*
Ga0135282_10841	Ga0135282_108411	F002994	DNLRILFANLNMEQKEKLNELISAIHEKDDLLDSQEDFLIKENKKHVKVKNAYALQVEKCEKLSSELSTCREMIDNLRNENAILNAKVDSHVCNVSIPNLRDDNIDLLAKIDELNASLASLRLENENLIAKAKDFNVCNATISDLRTKNEMLHAKVVELKSCKPSTSNVEHVSICTRCRDINVDAIHD
Ga0135282_10847	Ga0135282_108471	F003406	MKEWLYVKNYLKAREDIKDIIMRPIWQRFGLRKPKVDIDEAAEECQRAFGVVCSFIGTRDLIQEHIAFRVWPLVEKWEMPKETISKPDEGGLVRLKYTFRYGDKFVEPDDDWLKCIEATSDELLGSYSKAEDTALSAAFGGRKKKRLNRVFDAIGFVYPDYRYPIRGQ
Ga0135282_10866	Ga0135282_108661	F103019	MLFFHHAGKMSSIPPPAGGLSAAIVVVARRWKEYHVVAAVEGHELKSPETKHRPGPERLLETAHLELDGELLGGGG
Ga0135282_10874	Ga0135282_108741	F007409	MSQDKKAVAETKLTEEEKLFEQKKAVNPYIAGFLESMAKSNTEKITKEILEGLSEDTSDSDNYDAESGGEDFEDRPWRPSHIIFRKSTIKQSHLESMRGRYFRDISIVRAGEDNTLLYLRRMKL*
Ga0135282_10878	Ga0135282_108781	F073390	SEATLSFEDAKDPSAEASMVGGKFFTDVWDNGGREMAREIIQKSEKGIHDARKVAEAAEKSAEPEGQIGIN*
Ga0135282_10923	Ga0135282_109231	F009131	GKCYVKSVECVNKIKSSFASVGAFSSEENFSRGNPEGPLEWISHEAEAFEEILNSRGDICAFSGARGIASVLEKKGCEHVKFLAQSEATLSSEDIKDPSAEASVVGGKFFTDIWNDGGRGMAQEIIQRSEKGIHDARKVAEAAERSTEPERQLGTN*
Ga0135282_10943	Ga0135282_109431	F096761	LRLQGASVPEGALSLTHWNPVLLQQRVSDLEMANAG*
Ga0135282_10944	Ga0135282_109441	F050219	MSEEKKVAAEMKLSLSEEKNLGFIESIVKTNTEKITREILEGLSEDTGESDSYD
Ga0135282_10994	Ga0135282_109941	F089982	CAKKFVCLFFNTTFLLQGLILSNALRAQKNAEDEGCTMALNNLRSEVIELRNEGLEKDKILNSLLNKIKEDEATSKAQAEAQKCEIEDLQKQLAEAKLKCATAEADRDTINYWKNHWEKTTAELRSSKERCFEKSMTCVETIKTSFASVGAYANEGNFVLGDPEGPIDWSNGEAEAFE
Ga0135282_11001	Ga0135282_110011	F073390	KILAQSETALPFEDAKDPSAEASIIGGKFFTDIWDNGGREMAREIIQRSEKGIHDAREVAKAAKKSTESEGQLGTK*
Ga0135282_11031	Ga0135282_110311	F089982	LQGLKLSNALRAQKNAEDESCTIALNNLRTEVIRLRNEATEKDKILLSLVDKVKEDEASFKAQAEIQKNEVEDLRKQLAEAKEKCGLAEANRDISEYWRNYLEKIVAELRTSKERCFEKSLGC
Ga0135282_11081	Ga0135282_110811	F013401	SSTKYESSSDDNASDEEDNLRTLFANLNIAQKEKLNELVSAIHEKDDLLDSQEDCLIKENKKHVKVKKAYALEVEKCEKLSSELSTCREMIDNLRNENAILNAKVDSHVCNVSIPNLRDDNVDLLAKIDELNVSLASLRLENENLIAKAKDFDVCNATISDLRTKNDILQAKVV
Ga0135282_11083	Ga0135282_110831	F013401	MAKDGKKKVKSKSSTKYETSSDEDDKNEEDNLRILFATLNMEQKEKLNELISAIHEKDDLLDSQEDFLIKENKKHVKVKNAYALEREKCEKLSSELSTCHEILDNLRNENANLLAKVDSHVCIDPRNDDVNLLARIDELNASIASLRNENEKLIAKAKDFDVCNTTISDLRTKN
Ga0135282_11165	Ga0135282_111651	F003406	MKEWFYVKNDLKAREDITEIIMRPIWSRFGLQKPKVEIDEAAKGCRRAFGIVCSFIGTRDLVQEHVAYRIWPLIDNWEMPEETITNRSEGGLVRFKYTFRFGDQFIEPDDDWLKCVENTSDELLGAYSKSEDNALSAAFG
Ga0135282_11252	Ga0135282_112523	F062643	VALEASVPADQVLGSVDGTELVPAGSLQAASGGDLTPGRQLISHDLGVPSFFSNLQVLWYILA*