3300014557: Human fecal microbial communities from infant at 12 months in Denmark - 51_12M

Overview

Basic Information

• IMG/M Taxon OID: 3300014557
• GOLD Reference (Study | Sequencing Project | Analysis Project): Gs0127429 | Gp0193717 | Ga0169723
• Sample Name: Human fecal microbial communities from infant at 12 months in Denmark - 51_12M
• Sequencing Status: Permanent Draft
• Sequencing Center: Beijing Genomics Institute (BGI)
• Published?: N
• Use Policy: Open

Dataset Contents

• Total Genome Size: 128475507
• Sequencing Scaffolds: 5
• Novel Protein Genes: 5
• Associated Families: 5

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae → Faecalibacterium → Faecalibacterium prausnitzii	1
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales → Bacteroidaceae → Bacteroides	1
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Clostridiaceae → Clostridium → environmental samples → uncultured Clostridium sp.	1
Not Available	1
All Organisms → cellular organisms → Bacteria	1

Ecosystem and Geography

Ecosystem Assignment (GOLD)

• Name: Human Host-Associated Microbial Communities From Fecal Samples Of Mother And Infant In Denmark
• Type: Host-Associated
• Taxonomy: Host-Associated → Human → Digestive System → Large Intestine → Fecal → Human Host-Associated → Human Host-Associated Microbial Communities From Fecal Samples Of Mother And Infant In Denmark

Alternative Ecosystem Assignments

• Environment Ontology (ENVO): Unclassified
• Earth Microbiome Project Ontology (EMPO): Host-associated → Animal → Animal distal gut

Location Information

• Location: Denmark
• Coordinates
  • Lat. (^o): 55.678
  • Long. (^o): 12.531
  • Alt. (m): N/A
  • Depth (m): N/A

Associated Families

Family	Category	Number of Sequences	3D Structure?
F029444	Metagenome	188	Y
F067720	Metagenome	125	Y
F067844	Metagenome	125	N
F097493	Metagenome	104	Y
F099451	Metagenome	103	N

Associated Scaffolds

Scaffold	Taxonomy	Length
Ga0169723_100710	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae → Faecalibacterium → Faecalibacterium prausnitzii	30079
Ga0169723_100889	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales → Bacteroidaceae → Bacteroides	22930
Ga0169723_106012	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Clostridiaceae → Clostridium → environmental samples → uncultured Clostridium sp.	2350
Ga0169723_120245	Not Available	768
Ga0169723_124711	All Organisms → cellular organisms → Bacteria	656

Sequences

Scaffold ID	Protein ID	Family	Sequence
Ga0169723_100710	Ga0169723_10071027	F029444	MEVSGQLTGFEREDLMSWTASNLQRPLREDVSLEISGIIAEKESQISGRRFVGFGGPKKAAPFFNF*
Ga0169723_100889	Ga0169723_10088932	F099451	MEIKNVGQLRKIIENLSDDFEIEMRIRRKLTDEELKNYRYPYPYDTEYLTLEFDDIGVSNKVLCLGVTSNE*
Ga0169723_106012	Ga0169723_1060122	F097493	MKNGQAQFYERGVEIDGTVYGIHTDRDILRIKRSVVNNKFAETDDNFDMDTEIAKIQHTSITFKQPTSEQLSQIQAKAFGSMSDMKQYVQSIMNGELTQDEINAMLMLQIAELKAGVGGE
Ga0169723_120245	Ga0169723_1202452	F067720	MSSTTYGHIGDLTDMFAVQEQFRHATKMVCDFVDLNKIDHFAVIGNMVRNAGQLPQPFWLGPACGGGSCSAARCAAKT*
Ga0169723_124711	Ga0169723_1247111	F067844	MNTLAAETTSAWYLVLNRKRQTLPIYISQLSSHLPRPLTMGTQQVSAGAAVITPQHRS