3300014543: Human fecal microbial communities from infant at 12 months in Denmark - 511_12M

Overview

Basic Information

• IMG/M Taxon OID: 3300014543
• GOLD Reference (Study | Sequencing Project | Analysis Project): Gs0127429 | Gp0193716 | Ga0169722
• Sample Name: Human fecal microbial communities from infant at 12 months in Denmark - 511_12M
• Sequencing Status: Permanent Draft
• Sequencing Center: Beijing Genomics Institute (BGI)
• Published?: N
• Use Policy: Open

Dataset Contents

• Total Genome Size: 119527371
• Sequencing Scaffolds: 7
• Novel Protein Genes: 7
• Associated Families: 7

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales	1
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales → Tannerellaceae → Parabacteroides → unclassified Parabacteroides → Parabacteroides sp. D26	1
All Organisms → cellular organisms → Bacteria	3
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae	1
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae → Faecalibacterium → Faecalibacterium prausnitzii	1

Ecosystem and Geography

Ecosystem Assignment (GOLD)

• Name: Human Host-Associated Microbial Communities From Fecal Samples Of Mother And Infant In Denmark
• Type: Host-Associated
• Taxonomy: Host-Associated → Human → Digestive System → Large Intestine → Fecal → Human Host-Associated → Human Host-Associated Microbial Communities From Fecal Samples Of Mother And Infant In Denmark

Alternative Ecosystem Assignments

• Environment Ontology (ENVO): Unclassified
• Earth Microbiome Project Ontology (EMPO): Host-associated → Animal → Animal distal gut

Location Information

• Location: Denmark
• Coordinates
  • Lat. (^o): 55.678
  • Long. (^o): 12.531
  • Alt. (m): N/A
  • Depth (m): N/A

Associated Families

Family	Category	Number of Sequences	3D Structure?
F047125	Metagenome / Metatranscriptome	150	N
F051936	Metagenome	143	N
F055715	Metagenome	138	N
F062845	Metagenome	130	N
F087335	Metagenome	110	N
F089053	Metagenome	109	Y
F099269	Metagenome	103	N

Associated Scaffolds

Scaffold	Taxonomy	Length
Ga0169722_100620	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales	32737
Ga0169722_103258	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales → Tannerellaceae → Parabacteroides → unclassified Parabacteroides → Parabacteroides sp. D26	4807
Ga0169722_104958	All Organisms → cellular organisms → Bacteria	2951
Ga0169722_105443	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae	2667
Ga0169722_107441	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae → Faecalibacterium → Faecalibacterium prausnitzii	1866
Ga0169722_107726	All Organisms → cellular organisms → Bacteria	1788
Ga0169722_121433	All Organisms → cellular organisms → Bacteria	633

Sequences

Scaffold ID	Protein ID	Family	Sequence
Ga0169722_100620	Ga0169722_1006206	F087335	MLELYFNDGNFLPESREEEQSAETVLNIMLAGKTTDTEMCIWPCFYHAPMCKGVLINLDDGTTLRIKPFLNKEGEPELLIRCVTEETVEEVYQWVSNYDFDEPCAGNMPS*
Ga0169722_103258	Ga0169722_1032587	F051936	TGQVLFFPLALRGKAFGFSVLQEHAVMTPVISIFFAMLIIRYLSIHISIKK*
Ga0169722_104958	Ga0169722_1049582	F099269	VGELLLLDDLGDRAGGASVLASATGDAGVLVGDGSDVLELQNASGAGVDANATSDALVGINYGMSHGSFLSVDRRYRRCAPV*
Ga0169722_105443	Ga0169722_1054432	F062845	MEKTPFILHEKFRSDNNEQRKEQFQKRFEQYIVDELSNTVPSKSCA*
Ga0169722_107441	Ga0169722_1074412	F047125	MDVVLLLMVLGVMSSGFWAADALDHMRQEILQQEGKRRGWWS*
Ga0169722_107726	Ga0169722_1077262	F055715	LTKANEFDKINELLIERTAKKFERASKNKLKKFLTNEKFCDKINELIQVGTAEILDN*
Ga0169722_121433	Ga0169722_1214333	F089053	MEGLRPDKFAFSVKLERVVDGCRPAKGCVKKWLYVFANGQPELSTAEEVNVKNMEAFL*