3300014288: Urban prokaryotic and eukaryotic communities from the subway in New York, USA: city subway metal/plastic -P00191

Overview

Basic Information

• IMG/M Taxon OID: 3300014288
• GOLD Reference (Study | Sequencing Project | Analysis Project): Gs0118444 | Gp0135683 | Ga0121464
• Sample Name: Urban prokaryotic and eukaryotic communities from the subway in New York, USA: city subway metal/plastic -P00191
• Sequencing Status: Permanent Draft
• Sequencing Center: Weill Cornell Medical College
• Published?: Y
• Use Policy: Open

Dataset Contents

• Total Genome Size: 16695303
• Sequencing Scaffolds: 17
• Novel Protein Genes: 17
• Associated Families: 15

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
Not Available	5
All Organisms → cellular organisms → Eukaryota → Viridiplantae → Streptophyta → Streptophytina → Embryophyta → Tracheophyta → Euphyllophyta → Spermatophyta → Magnoliopsida → Mesangiospermae → Liliopsida → Petrosaviidae → commelinids → Poales → Poaceae → PACMAD clade → Panicoideae → Andropogonodae → Andropogoneae → Tripsacinae → Zea → Zea mays	9
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Corynebacteriales → Mycobacteriaceae → Mycobacterium → Mycobacterium tuberculosis complex → Mycobacterium tuberculosis	1
All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Enterobacterales → Enterobacteriaceae → Salmonella → unclassified Salmonella → Salmonella sp. hn-f5	1
All Organisms → cellular organisms → Eukaryota	1

Ecosystem and Geography

Ecosystem Assignment (GOLD)

• Name: Urban Prokaryotic And Eukaryotic Communities From The Subway And Surrounding Areas In New York, Usa
• Type: Engineered
• Taxonomy: Engineered → Built Environment → City → Subway → Unclassified → City Subway Metal/Plastic → Urban Prokaryotic And Eukaryotic Communities From The Subway And Surrounding Areas In New York, Usa

Alternative Ecosystem Assignments

• Environment Ontology (ENVO): Unclassified
• Earth Microbiome Project Ontology (EMPO): Free-living → Saline → Water (saline)

Location Information

• Location: USA:New York City
• Coordinates
  • Lat. (^o): 40.63
  • Long. (^o): -73.99
  • Alt. (m): N/A
  • Depth (m): N/A

Associated Families

Family	Category	Number of Sequences	3D Structure?
F002471	Metagenome / Metatranscriptome	556	Y
F002994	Metagenome / Metatranscriptome	514	Y
F003406	Metagenome / Metatranscriptome	488	Y
F007409	Metagenome / Metatranscriptome	351	Y
F009131	Metagenome / Metatranscriptome	322	Y
F014592	Metagenome / Metatranscriptome	261	Y
F020862	Metagenome / Metatranscriptome	221	Y
F032187	Metagenome / Metatranscriptome	180	Y
F037171	Metagenome / Metatranscriptome	168	N
F043815	Metagenome / Metatranscriptome	155	Y
F048829	Metagenome / Metatranscriptome	147	Y
F062643	Metagenome / Metatranscriptome	130	Y
F063479	Metagenome / Metatranscriptome	129	Y
F065522	Metagenome	127	N
F095123	Metagenome / Metatranscriptome	105	N

Associated Scaffolds

Scaffold	Taxonomy	Length
Ga0121464_100654	Not Available	1909
Ga0121464_101372	All Organisms → cellular organisms → Eukaryota → Viridiplantae → Streptophyta → Streptophytina → Embryophyta → Tracheophyta → Euphyllophyta → Spermatophyta → Magnoliopsida → Mesangiospermae → Liliopsida → Petrosaviidae → commelinids → Poales → Poaceae → PACMAD clade → Panicoideae → Andropogonodae → Andropogoneae → Tripsacinae → Zea → Zea mays	1429
Ga0121464_102747	All Organisms → cellular organisms → Eukaryota → Viridiplantae → Streptophyta → Streptophytina → Embryophyta → Tracheophyta → Euphyllophyta → Spermatophyta → Magnoliopsida → Mesangiospermae → Liliopsida → Petrosaviidae → commelinids → Poales → Poaceae → PACMAD clade → Panicoideae → Andropogonodae → Andropogoneae → Tripsacinae → Zea → Zea mays	1028
Ga0121464_103070	All Organisms → cellular organisms → Eukaryota → Viridiplantae → Streptophyta → Streptophytina → Embryophyta → Tracheophyta → Euphyllophyta → Spermatophyta → Magnoliopsida → Mesangiospermae → Liliopsida → Petrosaviidae → commelinids → Poales → Poaceae → PACMAD clade → Panicoideae → Andropogonodae → Andropogoneae → Tripsacinae → Zea → Zea mays	977
Ga0121464_103904	All Organisms → cellular organisms → Eukaryota → Viridiplantae → Streptophyta → Streptophytina → Embryophyta → Tracheophyta → Euphyllophyta → Spermatophyta → Magnoliopsida → Mesangiospermae → Liliopsida → Petrosaviidae → commelinids → Poales → Poaceae → PACMAD clade → Panicoideae → Andropogonodae → Andropogoneae → Tripsacinae → Zea → Zea mays	861
Ga0121464_104751	Not Available	767
Ga0121464_105473	All Organisms → cellular organisms → Eukaryota → Viridiplantae → Streptophyta → Streptophytina → Embryophyta → Tracheophyta → Euphyllophyta → Spermatophyta → Magnoliopsida → Mesangiospermae → Liliopsida → Petrosaviidae → commelinids → Poales → Poaceae → PACMAD clade → Panicoideae → Andropogonodae → Andropogoneae → Tripsacinae → Zea → Zea mays	709
Ga0121464_105626	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Corynebacteriales → Mycobacteriaceae → Mycobacterium → Mycobacterium tuberculosis complex → Mycobacterium tuberculosis	698
Ga0121464_106496	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Enterobacterales → Enterobacteriaceae → Salmonella → unclassified Salmonella → Salmonella sp. hn-f5	642
Ga0121464_106534	Not Available	640
Ga0121464_107809	All Organisms → cellular organisms → Eukaryota → Viridiplantae → Streptophyta → Streptophytina → Embryophyta → Tracheophyta → Euphyllophyta → Spermatophyta → Magnoliopsida → Mesangiospermae → Liliopsida → Petrosaviidae → commelinids → Poales → Poaceae → PACMAD clade → Panicoideae → Andropogonodae → Andropogoneae → Tripsacinae → Zea → Zea mays	576
Ga0121464_107858	All Organisms → cellular organisms → Eukaryota → Viridiplantae → Streptophyta → Streptophytina → Embryophyta → Tracheophyta → Euphyllophyta → Spermatophyta → Magnoliopsida → Mesangiospermae → Liliopsida → Petrosaviidae → commelinids → Poales → Poaceae → PACMAD clade → Panicoideae → Andropogonodae → Andropogoneae → Tripsacinae → Zea → Zea mays	574
Ga0121464_108335	Not Available	554
Ga0121464_108523	Not Available	546
Ga0121464_108621	All Organisms → cellular organisms → Eukaryota → Viridiplantae → Streptophyta → Streptophytina → Embryophyta → Tracheophyta → Euphyllophyta → Spermatophyta → Magnoliopsida → Mesangiospermae → Liliopsida → Petrosaviidae → commelinids → Poales → Poaceae → PACMAD clade → Panicoideae → Andropogonodae → Andropogoneae → Tripsacinae → Zea → Zea mays	542
Ga0121464_109324	All Organisms → cellular organisms → Eukaryota	516
Ga0121464_109604	All Organisms → cellular organisms → Eukaryota → Viridiplantae → Streptophyta → Streptophytina → Embryophyta → Tracheophyta → Euphyllophyta → Spermatophyta → Magnoliopsida → Mesangiospermae → Liliopsida → Petrosaviidae → commelinids → Poales → Poaceae → PACMAD clade → Panicoideae → Andropogonodae → Andropogoneae → Tripsacinae → Zea → Zea mays	506

Sequences

Scaffold ID	Protein ID	Family	Sequence
Ga0121464_100654	Ga0121464_1006541	F063479	MSERNWAETHWIARSTRGGGRPKSGEVDLGPPVKSGRVRGLGELHGLLAELAEALARLGGGWSGLATVAEALAAMAGGIKLAGAKERWLAGEGECGAKRGAPGEAL*
Ga0121464_101372	Ga0121464_1013722	F007409	MSEAAKKAAAEMKLSLDEEKNLGFLIAMSKTNTEKITREILEGLSEDTGDSESYDVDSGGEDSEDRPWRPSHSVYGKSTIKENHLVNMRGRYFRDLSIVRADEGEKTCPHPEENEVV
Ga0121464_102747	Ga0121464_1027472	F048829	ASENEAFMFQNLVGEKLSKAEIEELREYAKSCGYKPGALLFGGIDDEKLDCIRDQTGAKVIGTLSKSIGFPKLETDISRYRRQHIVGSLFYSNFKVNYFSPDFYCFG*
Ga0121464_103070	Ga0121464_1030701	F009131	REIKDLQKQLARAKEERALEETKRELSDFMVNKLESKVKELRTSQGKCYVKSVECVNKIKSSFASVGAFSSEENFSRGNPEGPLEWISHEAEAFEEILNSRGDICAFSGARGTASVLEKKGCGHVKFLAQSEATLSSEDIKDPSAEASVVGGKFFTDIWNDGGRGMAREIIERSEKGIHDARRVADAAERSREPEGQLGTN*
Ga0121464_103904	Ga0121464_1039041	F007409	MSEDKKTAAEMKLSLDEEKNLGFLIAMSKTNTEKITKEILEGLSEDTGDSDSYDVDSGGEDSEDRPWRPSHSVYGKSTIKENHLVNMR
Ga0121464_104751	Ga0121464_1047511	F014592	VKKLKASFARVGAFSSEENFTRGNPEGPIEWIDHEAEAFEEILNSRGDICAFSGARGIATILEKKGCEHVKILAQSEAALSFEDARDPSAEASIIGGKFFTDIWDNGGREMAGEIIRRSEKGIHDAREVAEAAEKSAEPEGQIGIN*
Ga0121464_105473	Ga0121464_1054731	F020862	DEAEKNSNLQKSLKELQEKCVNIGNQCLQRLKQVFNSVGASAEKFSPLVENLPETFEHIKGEVDALDEVIAGHADFCALLASRGTATAFLKAGCTHGNIVNRPNFSLSASDLLDIPSLARSIGNRFMTQIWVSGGRKMAGDEARSHLKPVRNLCLLLLPSPLKFVPFLLCCLIYTG*
Ga0121464_105626	Ga0121464_1056261	F037171	MYVCARIENDPVEEPEEFAGEAPEQQSFGGGKCPLTYLCPIHSLIHLPHYTFIPKD*LAFVIHVL
Ga0121464_106496	Ga0121464_1064962	F065522	MTRQISTLEEKHSRDQAELVQRCADFEEKYSQSQTELGQVSAALDDANALSSSLHAQLDSEKVIYKTVLCLAVFLLLAWFLKELIFVCRKKSVSLLLLVTILTDCTVILATR*
Ga0121464_106534	Ga0121464_1065341	F043815	KGRGDGLHENFGCYNFAYRKTTKFPVISYRSKWPAGWKSEWFYVKVDKDEDKLVQSPLELTFGETRPRCNMIRGSPSQTAMAEFRVISDHIGTRDLVQEFLAFKVFPTMRDWEMPKLEGEKKKGELVRLPYHYKFKKHFKKPCQKWLDTIEIMCNDILGNYSKKEDQLMTAAFGSRPKRRLNRVLDALNFDYPDYEQLGGDAGGPKRKRIAS
Ga0121464_107809	Ga0121464_1078091	F095123	ELQALPTIVEGFMSYASLVTCEGAMNALSREGCRHFEVFDQADEDFDRDIYKVEDPVVKESAGALYDRMWGPHGREVVRERAETARAQVTFSFVWCLLDVGCVCVC*
Ga0121464_107858	Ga0121464_1078581	F002471	CSEHLVSISKLNDEVASLNAQLKTSKSEVDKIKFARDAYTVGRHPSIKDGLGFKREAKNLTSHKAPIFVKEKGKAPMASNAKKNHAFMYYDRRNARNAYNDFDSHVYDSHAMFASSSSYKHDRDMPRRNIAHVPRKNVIHAPRKVVNEPSIIYCALNTSFAICRKDRKIVARKLGAKCKGDRTCIWVPKD
Ga0121464_108335	Ga0121464_1083351	F002994	MKKDDLLDTQEDFLIKENKKHVKVKNAYALEVEKCEKLSSELSTCREMIDNLRNENASLNKVDSHVCNVSIPNPRDNNDDLLARIDELNISLASLRDENKKLLAKAKDFDVCKITISDLRDKNDILHAKIVELNSCKPSTSTIEHVTICTRCRDVDINAIHDHMSLIKQQND
Ga0121464_108523	Ga0121464_1085231	F043815	KEKLVQSPLELIFGETRPQCRIGDLKGPTWAALGEFEIISEHIGTRDLVQEFLAFKVFPTLKEWEMPKLEGEKKKGELVRLPYYFKFKKFFKKPCKEWLDTVEVMCNEILGNYSKKEDQLMTAAFGARPKRRLNRVLDALGFEYPDYEQLNKGAEGLKRKRVAEALIRDEEIPAKEKKVF
Ga0121464_108621	Ga0121464_1086211	F003406	MKEWFYVKNDLKAREDIKEIIMRPIWQLFGLRKPKVEIDEASEACQRPFSTVCAFIGTRDLVQEHVAYRIWPLIDSWEMPKEAITNPSEGGLVRLKYTFRFGDQFVEPDDNWLKCVENTSDELLGAYSKSEDNALSAVFGSRKKKRLNRVFDAIRFV
Ga0121464_109324	Ga0121464_1093241	F032187	LFAVCNSNIAVSSLPSEPAEASPGPHPKGDDEIRKMAEAIMDKIVNQLLNEAAEIVLRED
Ga0121464_109604	Ga0121464_1096041	F062643	MVVAQTPDQRVALEGSIPTGLALGSAECTELVPAGLLQAASGGGLAPGYQLISPDLGIPSLFSNLQVMCCALV*