3300014145: Chrysochromulina tobin associated microbial communities from unialgal haptophyte culture, Seattle, Washington, USA - P5_0mM MetaG

Overview

Basic Information

• IMG/M Taxon OID: 3300014145
• GOLD Reference (Study | Sequencing Project | Analysis Project): Gs0128781 | Gp0206846 | Ga0180439
• Sample Name: Chrysochromulina tobin associated microbial communities from unialgal haptophyte culture, Seattle, Washington, USA - P5_0mM MetaG
• Sequencing Status: Permanent Draft
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Published?: N
• Use Policy: Open

Dataset Contents

• Total Genome Size: 86920228
• Sequencing Scaffolds: 7
• Novel Protein Genes: 7
• Associated Families: 7

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
All Organisms → cellular organisms → Eukaryota → Haptista → Haptophyta → Prymnesiophyceae → Prymnesiales	1
Not Available	1
All Organisms → cellular organisms → Eukaryota → Haptista → Haptophyta → Prymnesiophyceae → Prymnesiales → Chrysochromulinaceae → Chrysochromulina → Chrysochromulina tobinii	5

Ecosystem and Geography

Ecosystem Assignment (GOLD)

• Name: Chrysochromulina Tobin Associated Microbial Communities From Unialgal Haptophyte Culture In Seattle, Washington, Usa
• Type: Engineered
• Taxonomy: Engineered → Modeled → Simulated Communities (Microbial Mixture) → Unclassified → Unclassified → Defined Medium → Chrysochromulina Tobin Associated Microbial Communities From Unialgal Haptophyte Culture In Seattle, Washington, Usa

Alternative Ecosystem Assignments

• Environment Ontology (ENVO): Unclassified
• Earth Microbiome Project Ontology (EMPO): Free-living → Saline → Water (saline)

Location Information

• Location: USA: Seattle, Washington
• Coordinates
  • Lat. (^o): 47.6519
  • Long. (^o): -122.3113
  • Alt. (m): N/A
  • Depth (m): N/A

Associated Families

Family	Category	Number of Sequences	3D Structure?
F007958	Metagenome / Metatranscriptome	341	Y
F025010	Metagenome / Metatranscriptome	203	Y
F044865	Metagenome / Metatranscriptome	153	Y
F069666	Metagenome / Metatranscriptome	123	Y
F082271	Metagenome / Metatranscriptome	113	N
F087102	Metagenome / Metatranscriptome	110	N
F098631	Metagenome	103	N

Associated Scaffolds

Scaffold	Taxonomy	Length
Ga0180439_102199	All Organisms → cellular organisms → Eukaryota → Haptista → Haptophyta → Prymnesiophyceae → Prymnesiales	10524
Ga0180439_104398	Not Available	4589
Ga0180439_109238	All Organisms → cellular organisms → Eukaryota → Haptista → Haptophyta → Prymnesiophyceae → Prymnesiales → Chrysochromulinaceae → Chrysochromulina → Chrysochromulina tobinii	1130
Ga0180439_111413	All Organisms → cellular organisms → Eukaryota → Haptista → Haptophyta → Prymnesiophyceae → Prymnesiales → Chrysochromulinaceae → Chrysochromulina → Chrysochromulina tobinii	836
Ga0180439_115080	All Organisms → cellular organisms → Eukaryota → Haptista → Haptophyta → Prymnesiophyceae → Prymnesiales → Chrysochromulinaceae → Chrysochromulina → Chrysochromulina tobinii	580
Ga0180439_115775	All Organisms → cellular organisms → Eukaryota → Haptista → Haptophyta → Prymnesiophyceae → Prymnesiales → Chrysochromulinaceae → Chrysochromulina → Chrysochromulina tobinii	548
Ga0180439_116165	All Organisms → cellular organisms → Eukaryota → Haptista → Haptophyta → Prymnesiophyceae → Prymnesiales → Chrysochromulinaceae → Chrysochromulina → Chrysochromulina tobinii	533

Sequences

Scaffold ID	Protein ID	Family	Sequence
Ga0180439_102199	Ga0180439_1021995	F044865	MLRTLLGLPPCENLQDSGFEAHFTSNRFLDTPARDDAFALGHHASLSPFCRERSRSRFAPHHRAHDGERPMAAARAANSGGGGGAKFSLLNRGSSKQDGVATGIFADEGRERGSGGSRNPQLTVLPHASDIKWIDQFPYYPAYRYHSYRSYCGACSSILFLTILLLRFSTSIMDFVNRPPIVTEAREQFERDSTITYRLPRVGVQFRQNGWRPFNDPRYLSIIFEQGVIAMSGNVSYVDLGTHECAFVDRDGRLIADGAMCPLASGDAAGYLQGDFHDVTFAFVRARLARCDNGTDVEGKPLPGMCMMPSEIDRLVYDGVLYMFEQETDMRVDESSPFLRIRQWRREFISRVHLSTDVYFTVRKVTVEPKYIFDAYLPGFKAGDSFTLLHSTQETYTDFEEEAAQYAAFYFRLAPELIRQSRSYTSLFDLFETWGAIVAFLYLVFGLTARSFNAFHFNRQVRGLDLRKLDKGQFTPFGRLIDKSFQMPREFQSMTAD*
Ga0180439_104398	Ga0180439_1043986	F098631	MSIAWPVVGDALASQGSLVRVRPASDATTLSLLCSPLGVGRASTHAESEFLAHVTAVHGWVLDFDKEQGAWHVFLFCFLRDIFIPSEHMVVISCIPTSMTFGDLLLANRCGTLRSLVDDSDLEAERAALQVVALHSKLLQLQDEDSSSEFQCVTQVCRYRDFLCSLPADAWLQYVFKPDPSMLPSYLLS*
Ga0180439_109238	Ga0180439_1092381	F007958	FINKRRLDVRNLMGGFDRMKKGFFDLATMRRALCNAFGNQWVELAMTQAEFNEVCEPYLTRVPLQNGEPSAMVQWRQLAQDLQMLAETGRPTADFLERLAAVEAKERASVMLEKEYGVSMDELKLAFEYMKQRIEMLSKRGLTDGFRRIDDDHKGSLTAEELKRFFMEEAHCPWFINDRTLWCLCDFADLNNDDEIGFLELSQVLLCQDIIQFAALVPNKKKEAQSEKDNSMKVGSRGCTVAQVREAQRECCNALINRGSGDARQNNVRSVLAYLDVREDGMITRDEFFEKMKLLKVLKHMTSEKKVKGTIEKAALETMLDIVDEVARIIEEQMPGDQGGAVAAGYLNLAAFAKGCFSTDGFGGFVDVMTIAGIQ*
Ga0180439_111413	Ga0180439_1114131	F082271	MSEARQRSQQALLSAVSAFRGDGMRKAWNGWLGLLHDRQVMASAVYCMSLRLQRTGFASWLAAAEVSQQLRSTLSSLSPAKRSMRKAINSWSEYGNALQSVRRATAALRMREERVAFSTWHEHVCSNCERDAAMRCAVSSMLQSSMRASLNTWMSYAEEHAEASRALAGALSSLQPEGRAMRSALNTWVGVMMQRRSMVVAAASLIRGEQLWGLRTWSAHAPLVRKQRERVEETARRAIKSMSLQSLRAAMNSWAAMSEARQRSQQALLSAVSA
Ga0180439_115080	Ga0180439_1150801	F069666	GQPVPTRLDQITDLDVEQLIEAGRPGDAAVAGRMLPGLARLHGYGYVVDVAAVRAADLQNGAWDTRRPSFLHGTAKDALKRMHCISGEGEPPLELTIAAVACAGSGIVCGIPVQQMREGGVTVLNLSNKGLQVAAAMLVAYLIPATSVVLKNCNLLKNSLDVKSATMLAKIGAEKGIMLSGMTRDQSLAYFSG
Ga0180439_115775	Ga0180439_1157751	F087102	AAGLAKLRPYLDANMSKESADAFQECCGKLFVLSRVHTSMAPEVSFAKVQEITDALSRACSMTSHAAAPLVAGLVTGLKRFVEQRILPNGALDHITKQGFRLPANEVGALLDRYRWPHDAKRTQVLHILRKTLEAVAELRTSSDAAVRGSESIEEARLILNHSHERLVRTMESVLDEHATRA
Ga0180439_116165	Ga0180439_1161651	F025010	ETEAEFYEMSHLFVMTIIALGLASATIVLKFMDDVVFATIRMKETFRVAHELFIIYLREMDFDPARALHMGNVFRRGGQDTLLSEARRNAAASFRTCGGTPQLDGAKKSDAKNPKTDTKPNGKSDDSSKKPCPDFNAGRPCKKLKPDGTCVFAHRCNQFVSDKGPGGYCFGVHARCT