3300014122: Clean room microbial communities from NASA Spacecraft Assembly Facility at Jet Propulsion Laboratory, Pasadena, California, USA - InSight In1P SAF170 SPAdes reassembly

Overview

Basic Information

• IMG/M Taxon OID: 3300014122
• GOLD Reference (Study | Sequencing Project | Analysis Project): Gs0095512 | Gp0111875 | Ga0181458
• Sample Name: Clean room microbial communities from NASA Spacecraft Assembly Facility at Jet Propulsion Laboratory, Pasadena, California, USA - InSight In1P SAF170 SPAdes reassembly
• Sequencing Status: Permanent Draft
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Published?: N
• Use Policy: Open

Dataset Contents

• Total Genome Size: 10817262
• Sequencing Scaffolds: 20
• Novel Protein Genes: 22
• Associated Families: 14

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
Not Available	9
All Organisms → cellular organisms → Eukaryota → Viridiplantae → Streptophyta → Streptophytina → Embryophyta → Tracheophyta → Euphyllophyta → Spermatophyta → Magnoliopsida → Mesangiospermae → eudicotyledons → Gunneridae → Pentapetalae → rosids → rosids incertae sedis → Vitales → Vitaceae → Viteae → Vitis → Vitis vinifera	2
All Organisms → cellular organisms → Eukaryota → Viridiplantae → Streptophyta → Streptophytina → Embryophyta → Tracheophyta → Euphyllophyta → Spermatophyta → Acrogymnospermae → Pinopsida → Pinidae → Conifers I → Pinales → Pinaceae → Picea → Picea glauca	1
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales → Bacteroidaceae → Bacteroides → Bacteroides uniformis	1
All Organisms → cellular organisms → Eukaryota → Viridiplantae → Streptophyta → Streptophytina → Embryophyta → Tracheophyta → Euphyllophyta → Spermatophyta → Magnoliopsida → Mesangiospermae → eudicotyledons → Gunneridae → Pentapetalae → rosids → fabids → Rosales → Rosaceae → Amygdaloideae → Amygdaleae → Prunus → Prunus persica	1
All Organisms → Viruses → Predicted Viral	1
All Organisms → cellular organisms → Eukaryota → Viridiplantae → Streptophyta → Streptophytina → Embryophyta → Tracheophyta → Euphyllophyta → Spermatophyta → Magnoliopsida → Mesangiospermae → eudicotyledons → Gunneridae → Pentapetalae → rosids → malvids → Malvales → Malvaceae → Malvoideae → Hibiscus → Hibiscus syriacus	1
All Organisms → cellular organisms → Eukaryota → Viridiplantae → Streptophyta	1
All Organisms → cellular organisms → Eukaryota → Viridiplantae → Streptophyta → Streptophytina → Embryophyta	1
All Organisms → cellular organisms → Eukaryota → Opisthokonta → Fungi	1
All Organisms → cellular organisms → Bacteria	1

Ecosystem and Geography

Ecosystem Assignment (GOLD)

• Name: Clean Room Microbial Communities From Nasa Spacecraft Assembly Facility At Jet Propulsion Laboratory, Pasadena, California, Usa
• Type: Engineered
• Taxonomy: Engineered → Built Environment → Unclassified → Unclassified → Unclassified → Clean Room → Clean Room Microbial Communities From Nasa Spacecraft Assembly Facility At Jet Propulsion Laboratory, Pasadena, California, Usa

Alternative Ecosystem Assignments

• Environment Ontology (ENVO): Unclassified
• Earth Microbiome Project Ontology (EMPO): Free-living → Non-saline → Surface (non-saline)

Location Information

• Location: USA: Jet Propulsion Laboratory, Pasadena, California
• Coordinates
  • Lat. (^o): 34.1
  • Long. (^o): -118.1
  • Alt. (m): N/A
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F011735	Metagenome / Metatranscriptome	287	Y
F023843	Metagenome / Metatranscriptome	208	Y
F028713	Metagenome / Metatranscriptome	190	Y
F033665	Metagenome / Metatranscriptome	176	Y
F034461	Metagenome / Metatranscriptome	174	Y
F038985	Metagenome / Metatranscriptome	164	Y
F044253	Metagenome	154	Y
F045048	Metagenome / Metatranscriptome	153	Y
F046363	Metagenome / Metatranscriptome	151	Y
F057039	Metagenome / Metatranscriptome	136	Y
F078089	Metagenome	116	Y
F078199	Metagenome / Metatranscriptome	116	Y
F096629	Metagenome / Metatranscriptome	104	Y
F100750	Metagenome / Metatranscriptome	102	Y

Associated Scaffolds

Scaffold	Taxonomy	Length
Ga0181458_100059	Not Available	8815
Ga0181458_100093	Not Available	7776
Ga0181458_100158	Not Available	6816
Ga0181458_100193	Not Available	6320
Ga0181458_100267	Not Available	5531
Ga0181458_100278	All Organisms → cellular organisms → Eukaryota → Viridiplantae → Streptophyta → Streptophytina → Embryophyta → Tracheophyta → Euphyllophyta → Spermatophyta → Magnoliopsida → Mesangiospermae → eudicotyledons → Gunneridae → Pentapetalae → rosids → rosids incertae sedis → Vitales → Vitaceae → Viteae → Vitis → Vitis vinifera	5470
Ga0181458_100371	All Organisms → cellular organisms → Eukaryota → Viridiplantae → Streptophyta → Streptophytina → Embryophyta → Tracheophyta → Euphyllophyta → Spermatophyta → Acrogymnospermae → Pinopsida → Pinidae → Conifers I → Pinales → Pinaceae → Picea → Picea glauca	4840
Ga0181458_100391	Not Available	4710
Ga0181458_100465	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales → Bacteroidaceae → Bacteroides → Bacteroides uniformis	4236
Ga0181458_100590	Not Available	3554
Ga0181458_100595	Not Available	3526
Ga0181458_100751	All Organisms → cellular organisms → Eukaryota → Viridiplantae → Streptophyta → Streptophytina → Embryophyta → Tracheophyta → Euphyllophyta → Spermatophyta → Magnoliopsida → Mesangiospermae → eudicotyledons → Gunneridae → Pentapetalae → rosids → fabids → Rosales → Rosaceae → Amygdaloideae → Amygdaleae → Prunus → Prunus persica	2869
Ga0181458_100801	All Organisms → Viruses → Predicted Viral	2676
Ga0181458_100824	All Organisms → cellular organisms → Eukaryota → Viridiplantae → Streptophyta → Streptophytina → Embryophyta → Tracheophyta → Euphyllophyta → Spermatophyta → Magnoliopsida → Mesangiospermae → eudicotyledons → Gunneridae → Pentapetalae → rosids → malvids → Malvales → Malvaceae → Malvoideae → Hibiscus → Hibiscus syriacus	2582
Ga0181458_100920	All Organisms → cellular organisms → Eukaryota → Viridiplantae → Streptophyta → Streptophytina → Embryophyta → Tracheophyta → Euphyllophyta → Spermatophyta → Magnoliopsida → Mesangiospermae → eudicotyledons → Gunneridae → Pentapetalae → rosids → rosids incertae sedis → Vitales → Vitaceae → Viteae → Vitis → Vitis vinifera	2297
Ga0181458_101120	All Organisms → cellular organisms → Eukaryota → Viridiplantae → Streptophyta	1904
Ga0181458_102661	Not Available	785
Ga0181458_102729	All Organisms → cellular organisms → Eukaryota → Viridiplantae → Streptophyta → Streptophytina → Embryophyta	766
Ga0181458_103782	All Organisms → cellular organisms → Eukaryota → Opisthokonta → Fungi	588
Ga0181458_104736	All Organisms → cellular organisms → Bacteria	501

Sequences

Scaffold ID	Protein ID	Family	Sequence
Ga0181458_100056	Ga0181458_10005611	F096629	MGTPSNQPEIYSMMHEEDEEMQHDISKLRDQVQQFSLSQRVTKN*
Ga0181458_100059	Ga0181458_1000596	F078089	MGLPEGQIIEQAYVILLKLDKNKEVLVSNDWGKLGRNSKNFY*
Ga0181458_100093	Ga0181458_1000934	F011735	MWLGPYTVKHVLGMGAYELGDYEGNTLKELRNGLYLKRYYA*
Ga0181458_100158	Ga0181458_1001583	F046363	MFFKRDGFWSMVLDALASINTCYNIERNIMKNQAGSPGFWIQGKIFVYMCFMCSTLTLLIFCVVEFICR*
Ga0181458_100193	Ga0181458_1001937	F034461	MLGYDFDIIYRKVKKHFVADVLSRKDEDVEALFCVICIIQIDWTNEASNEWNKDEKVWPFIQKL*
Ga0181458_100267	Ga0181458_1002673	F046363	MVLDASACINMYCNIERNIMKNQAGSPGFGIQGKISVYMCFMCYALTLFIFCVLEFVSR*
Ga0181458_100278	Ga0181458_1002785	F078199	MLGYDFEIIYKKGKQNVVADALSRKDEDVEALLCAISII*
Ga0181458_100371	Ga0181458_1003712	F028713	VRDIREDKKMLLVKVDTLKNTSDALKKSMSSENFSWCRETMGILGMEK*
Ga0181458_100391	Ga0181458_1003911	F057039	MLEMDVVGVVVVVEVNGNDNMELGMEDIDDIVDGSCNFLANLVSKTGFGVEMANVSKKRVCSNYFEMDAHKLEIVN*
Ga0181458_100465	Ga0181458_1004653	F028713	MVEGKKVLLVKVGTLKNYADALTKYVSTEKFSWCRETLGIAGLDQ*
Ga0181458_100590	Ga0181458_1005901	F046363	FGRDGFLAMVLEALACINMCCNIERNIMKNQAGSPGFGIQGKISVYMCSMCYALTLFIFCVFEFVCK*
Ga0181458_100595	Ga0181458_1005952	F057039	MGVVGIFVVVKVDGSDNLEFSMEDIEENIEDIVDGSHTFLANLVAKIGFRADMVNVAKERVCSNYFEMDVHKLEIVN*
Ga0181458_100751	Ga0181458_1007511	F038985	MKSNTSPCTHVAPIFPKKRRLVPQNGSGSSGPKKLLKIVNCATIKETEKLKETMVGV*
Ga0181458_100801	Ga0181458_1008011	F044253	VVKRIMLLLYVLTEEQDVDILTKELTKCKFEFHRNRIGVTDNPFLVRREC*
Ga0181458_100824	Ga0181458_1008241	F046363	FGRDGFRSMVLDASACINMYYNIERNIMKNQASSFGFGIQGKIFVYMCFMCSALALFICCVLEFVCR*
Ga0181458_100920	Ga0181458_1009201	F100750	LNIRVKYIPEEHRIDVFIGTLKDNIQHEVHLWEPDSLEKLFRLARKMERKIMATRKPTSHNYKYGSVVATSLP*
Ga0181458_101003	Ga0181458_1010032	F096629	MPRGKKMQTPGKEPKSSSMTHEEEEEMLHDISNLQEQVQQMSHSQKLT*
Ga0181458_101120	Ga0181458_1011205	F078199	MGLLGYEFEIIYKKWKKNVVANAISRKDEDVEALLCAISII*
Ga0181458_102661	Ga0181458_1026612	F023843	MTSSGKIEIEKFNVQSFELWKLNMEDLLVDKYLLIVVDSGTKPTIMSVEDWAKLDWKAKSTI*
Ga0181458_102729	Ga0181458_1027291	F033665	FGREVGAHEISNTQKGFGQILNRSGDIKIINIFNGVPKSKLRENKILICINMNLC*
Ga0181458_103782	Ga0181458_1037821	F045048	ANKSTVFINGSSKGSIASIPIGGHIAPNSTAGDRALWKNVQNIAKKNKASDTINKPTPRFNPLWTARV*
Ga0181458_104736	Ga0181458_1047361	F100750	KLNIRLNDIPKEHRIDVFIRTLKDNIQHEVHLWEPDSLEKAFRLARKMERKIMATRKPTTHNHKDGSVTSPSHP*