NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Sample 3300013940

3300013940: Human gut microbial communities from patients with symptomatic atherosclerosis - Chalmers University of Technology - 252



Overview

Basic Information
IMG/M Taxon OID3300013940 Open in IMG/M
GOLD Reference
(Study | Sequencing Project | Analysis Project)
Gs0118643 | Gp0137846 | Ga0117807
Sample NameHuman gut microbial communities from patients with symptomatic atherosclerosis - Chalmers University of Technology - 252
Sequencing StatusPermanent Draft
Sequencing CenterChalmers University of Technology
Published?N
Use PolicyOpen

Dataset Contents
Total Genome Size108373162
Sequencing Scaffolds35
Novel Protein Genes37
Associated Families33

Dataset Phylogeny
Taxonomy GroupsNumber of Scaffolds
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes3
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → unclassified Caudoviricetes → Podoviridae sp. ct1h531
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales22
Not Available5
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae2
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae → Subdoligranulum → Subdoligranulum variabile1
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Coriobacteriia → Coriobacteriales → Coriobacteriaceae → Collinsella → Collinsella aerofaciens1

Ecosystem and Geography

Ecosystem Assignment (GOLD)
NameHuman Gut Microbial Communities From Patients With Symptomatic Atherosclerosis - Chalmers University Of Technology
TypeHost-Associated
TaxonomyHost-Associated → Human → Digestive System → Unclassified → Unclassified → Human Gut → Human Gut Microbial Communities From Patients With Symptomatic Atherosclerosis - Chalmers University Of Technology

Alternative Ecosystem Assignments
Environment Ontology (ENVO)Unclassified
Earth Microbiome Project Ontology (EMPO)Host-associated → Animal → Animal distal gut

Location Information
Location
CoordinatesLat. (o)N/ALong. (o)N/AAlt. (m)N/ADepth (m)N/A
Location on Map
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Associated Families

Associated Scaffolds

Sequences


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