3300013900: Human gut microbial communities from patients with symptomatic atherosclerosis - Chalmers University of Technology - 250

Overview

Basic Information

• IMG/M Taxon OID: 3300013900
• GOLD Reference (Study | Sequencing Project | Analysis Project): Gs0118643 | Gp0137859 | Ga0117820
• Sample Name: Human gut microbial communities from patients with symptomatic atherosclerosis - Chalmers University of Technology - 250
• Sequencing Status: Permanent Draft
• Sequencing Center: Chalmers University of Technology
• Published?: N
• Use Policy: Open

Dataset Contents

• Total Genome Size: 66675936
• Sequencing Scaffolds: 7
• Novel Protein Genes: 7
• Associated Families: 7

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales	3
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes	2
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae	1
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Lachnospiraceae → Dorea → Dorea longicatena	1

Ecosystem and Geography

Ecosystem Assignment (GOLD)

• Name: Human Gut Microbial Communities From Patients With Symptomatic Atherosclerosis - Chalmers University Of Technology
• Type: Host-Associated
• Taxonomy: Host-Associated → Human → Digestive System → Unclassified → Unclassified → Human Gut → Human Gut Microbial Communities From Patients With Symptomatic Atherosclerosis - Chalmers University Of Technology

Alternative Ecosystem Assignments

• Environment Ontology (ENVO): Unclassified
• Earth Microbiome Project Ontology (EMPO): Host-associated → Animal → Animal distal gut

Location Information

• Coordinates
  • Lat. (^o): N/A
  • Long. (^o): N/A
  • Alt. (m): N/A
  • Depth (m): 2

Associated Families

Family	Category	Number of Sequences	3D Structure?
F029444	Metagenome	188	Y
F047125	Metagenome / Metatranscriptome	150	N
F051935	Metagenome	143	N
F056309	Metagenome	137	N
F062845	Metagenome	130	N
F082887	Metagenome / Metatranscriptome	113	Y
F090513	Metagenome	108	N

Associated Scaffolds

Scaffold	Taxonomy	Length
Ga0117820_1000015	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales	62494
Ga0117820_1000482	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes	5338
Ga0117820_1002236	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales	2179
Ga0117820_1016546	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae	749
Ga0117820_1017238	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes	732
Ga0117820_1018584	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales	703
Ga0117820_1025894	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Lachnospiraceae → Dorea → Dorea longicatena	586

Sequences

Scaffold ID	Protein ID	Family	Sequence
Ga0117820_1000015	Ga0117820_10000153	F082887	MEKIKAIAKYAINILAIISALIAGINAVDGITIPYAVQIIQVIAVIQGVISTYLLGQKVVRNRGENRENNRNKPKV*
Ga0117820_1000482	Ga0117820_10004823	F029444	MGVSEQLTGFEPEDLMSWTVSNLQRPFREDFSLEISGIIAEKESQIFGRRFVGFDGPKKAAPFFNF*
Ga0117820_1002236	Ga0117820_10022362	F051935	MKEEKRMKRLLGLLMAVMVMMGGISCAVAENTNPIVSDWLTELKSKRLIQIVEDEIGEGWTLYQPNGREEEENFSSAANLKEMRFLPVVAQKDNQLRLLILRRQGDLWKVSEQNDRALMRDGWTLQNFSAMPYGNSDWTYIYFDFVDENQKRWNLMLNLGDGYVSSFGTISHYVEGYGTTYINMNYDRGLEFLIDAPAYSRFSYEVYPVERYSFGVEDFDLATCPLTMQEFLVPAIVTCGEEGAGLYIMVQQDVQPIVTLADGDAIEAIPQKWELDWTIVYYQGNYLFMKTENCKMEE*
Ga0117820_1016546	Ga0117820_10165461	F090513	MLKIFEIAKYVRKMEWKLLHIKHILYMRPFGALKIVPQSVGNKNGTKAVLQGWAAAFV
Ga0117820_1017238	Ga0117820_10172381	F047125	LLMVLGVMLSGFRTADALDHIRREILRQEGKRRGWWS*
Ga0117820_1018584	Ga0117820_10185841	F062845	FILHEKFRSDNNEQRKEQFQKRFERYIVDELSNIAPSKSCA*
Ga0117820_1025894	Ga0117820_10258941	F056309	MPSLSVVPLLLGDSDSLSVSYGMEPEQEALSIVSFKD*EAASPV