3300013722: Marine hypoxic microbial communities from the Gulf of Mexico, USA - 2m_Station4_GOM_Metagenome

Overview

Basic Information

• IMG/M Taxon OID: 3300013722
• GOLD Reference (Study | Sequencing Project | Analysis Project): Gs0118455 | Gp0134767 | Ga0116824
• Sample Name: Marine hypoxic microbial communities from the Gulf of Mexico, USA - 2m_Station4_GOM_Metagenome
• Sequencing Status: Permanent Draft
• Sequencing Center: Georgia Institute of Technology
• Published?: N
• Use Policy: Open

Dataset Contents

• Total Genome Size: 13928896
• Sequencing Scaffolds: 38
• Novel Protein Genes: 45
• Associated Families: 42

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Flavobacteriaceae → Maribacter → unclassified Maribacter → Maribacter sp.	2
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Flavobacteriaceae → Xanthomarina → Xanthomarina gelatinilytica	1
Not Available	22
All Organisms → Viruses → Predicted Viral	2
All Organisms → cellular organisms → Bacteria → PVC group → Planctomycetes → Phycisphaerae → unclassified Phycisphaerae → Phycisphaerae bacterium	1
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Crocinitomicaceae → unclassified Crocinitomicaceae → Crocinitomicaceae bacterium TMED45	1
All Organisms → cellular organisms → Archaea → Euryarchaeota → unclassified Euryarchaeota → Euryarchaeota archaeon	2
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes	1
All Organisms → cellular organisms → Bacteria	1
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes	1
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → unclassified Caudoviricetes → Pelagibacter phage Mosig EXVC030M	1
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Saprospiria → Saprospirales → unclassified Saprospirales → Saprospirales bacterium	2
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → Aokuangvirus → Aokuangvirus SCBWM1	1

Ecosystem and Geography

Ecosystem Assignment (GOLD)

• Name: Marine Hypoxic Microbial Communities From The Gulf Of Mexico, Usa
• Type: Environmental
• Taxonomy: Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Hypoxic Microbial Communities From The Gulf Of Mexico, Usa

Alternative Ecosystem Assignments

• Environment Ontology (ENVO): marine biome → marine oxygen minimum zone → sea water
• Earth Microbiome Project Ontology (EMPO): Free-living → Saline → Water (saline)

Location Information

• Location: USA: Gulf of Mexico
• Coordinates
  • Lat. (^o): N/A
  • Long. (^o): N/A
  • Alt. (m): N/A
  • Depth (m): N/A

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000754	Metagenome / Metatranscriptome	906	Y
F003027	Metagenome / Metatranscriptome	512	Y
F003769	Metagenome / Metatranscriptome	469	Y
F004281	Metagenome / Metatranscriptome	445	Y
F004368	Metagenome / Metatranscriptome	441	Y
F007006	Metagenome / Metatranscriptome	360	Y
F012179	Metagenome / Metatranscriptome	283	Y
F016126	Metagenome	249	Y
F018289	Metagenome	236	Y
F019643	Metagenome / Metatranscriptome	228	Y

Associated Scaffolds

Scaffold	Taxonomy	Length
Ga0116824_100060	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Flavobacteriaceae → Maribacter → unclassified Maribacter → Maribacter sp.	1895
Ga0116824_100265	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Flavobacteriaceae → Xanthomarina → Xanthomarina gelatinilytica	1211
Ga0116824_100291	Not Available	1193
Ga0116824_100321	All Organisms → Viruses → Predicted Viral	1166
Ga0116824_100430	All Organisms → Viruses → Predicted Viral	1080
Ga0116824_100750	Not Available	937
Ga0116824_100778	All Organisms → cellular organisms → Bacteria → PVC group → Planctomycetes → Phycisphaerae → unclassified Phycisphaerae → Phycisphaerae bacterium	926
Ga0116824_101115	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Crocinitomicaceae → unclassified Crocinitomicaceae → Crocinitomicaceae bacterium TMED45	843
Ga0116824_101363	Not Available	801
Ga0116824_101429	Not Available	792

Sequences

Scaffold ID	Protein ID	Family	Sequence
Ga0116824_100060	Ga0116824_1000602	F037128	MIRRIKKPLLEFFEKHTLTDAEKTFILGCINAQKKYPQLTHRQWQIVCEIKDKYNEQISRS*
Ga0116824_100265	Ga0116824_1002651	F012179	TVRKVGKFKFLRFPNKGIRRNKKISDLATSGKLSYPTLERFINRERSFGYPIKYSKPIGFKRKRK*
Ga0116824_100291	Ga0116824_1002912	F091894	MSNRKKALKRPKVTIVDENPGWGVYVWRCASNGKIFRDDDDNVLNIPSRQYDLEKIRIITEAAAHYGEPQGEPVFVPGVQRSTDEDYKEQMDRMKAGLLPTMNDFGAVTDAKKAAIQRGEMSG*
Ga0116824_100321	Ga0116824_1003211	F091894	MSNRKSPTNPFKGMKKPKVTVVEENPGWGLYAWRKENGQLFMDDDHNLLNIPSRYGDITKMEQIRKAAAYYGEPEGKPEFIPGVQRTTDEDYSEQVNRMKEGLLPTMNDFGAVMDAKRGAGMTDG*
Ga0116824_100430	Ga0116824_1004302	F018289	LQGKEDIMTEFTRQQLNDLRKGMQSALDSITNGTHLSDITFDVGNCRYSGGEATFQVKCILKGAKTREQIDLEYYAEMHGIDTTAIAKLQGEDMSIIGYKTRARKKPWILQRLRDGAEFVAGDNLVKQFFKKREELEDAN*
Ga0116824_100430	Ga0116824_1004303	F037208	MMFVILATKPNNDGTEGFRFNFFGNKGIYRKRKVINRYGKSTGDVMTGYHFGKRSVYFEQSTPKRKLYHFAG*
Ga0116824_100750	Ga0116824_1007502	F007006	MEAALKQEIKAEISRIVDLMIQAEAIREQMASLKKDIKEEYGIPVATITKVATIVRKQNLSEEEDKWEEIKEIVDACS*
Ga0116824_100778	Ga0116824_1007782	F073277	MKLAVTIDVDGDIMYVPEGSVFPNFPKPKLFDNIEDAEEECAKWNTGVIVNYETGESVGKIRSFTDAERRRAEERARINRYDGTSTNQDTTQ*
Ga0116824_101115	Ga0116824_1011151	F004368	MGTRLAEIISDRHEDLLYEDSRAMKLTSYVMAERCLQVEAYEIYNGYKEGDYSTLTYILEGGFKGFHNMEPSELIEEYKQIEEQWYELESSCELHWQPYEEDPIWQITERLKENFDRTGRTNG*
Ga0116824_101115	Ga0116824_1011152	F029777	RATNYVTWDHGKEMWCEVDHLMMNFYIKAKTSETRQELEDKINRGVVELLKGPRYYEQAKVYCMIDMHYPEDESIYDLVKRPKKDRNPYCVSGDEGDITYHVTLHVQECNATDLAIYDEKDRGDFFDLSGNNLESPMADLERIVNGN*
Ga0116824_101363	Ga0116824_1013631	F091894	MSNKRKALKKPRVTVVDENPGWGIYAWKKADGSLFMDEDHNLLNIPSRQYDMDKMAQITKAAAHYGEPEGRPYFIPGIQRATDEEYTEQRERMKEGLLPTMND
Ga0116824_101429	Ga0116824_1014292	F086309	MNIKEAKSLAFGSSPSTTLEQYYDAWQWLYDNKIELQESDENYMDKLICDGHITIDK*
Ga0116824_101468	Ga0116824_1014681	F020468	MPLVKKDITLAAGATSEQILAGTTYEYVSGGTRLIVAATAGDGAGGIAADDDTEVVMNFNVNNAEFCRDASVSPAISGEAFGWKGNYVMNDMVTTAAERNRPIITFTNNSAAARNVKVAVFIGG*
Ga0116824_101473	Ga0116824_1014733	F026855	MAMYEVEVEGRYTAVIEVEADSPDEAESEAIRTFESDYDVVANMGAESWDHTSIVAVNEQEEDEDY*
Ga0116824_101789	Ga0116824_1017892	F042289	MIDGIFRIEEVRADECPDEFLTRIGSANVTVWRNRLADYDGKLCFSFPYISWCGDMYVAPDEPMAILVEETWEEAALDIEFDLMKKGLV*
Ga0116824_101789	Ga0116824_1017893	F084122	MFYYNVKFTNGESLVIMSDGDPVNEVPVEFQGDVIDVTTICEVSV*
Ga0116824_101799	Ga0116824_1017992	F016126	LLGNKLKDYSGINNVDIIYFNWYELVSKARKDQTAILILTFAQTSLYNPYTTKGLMKALKINHIPIHLFTTGLLEQKKEGLVCNYKTEEPMSYFKNPYFLTQNASVIHKTEYLQMLSMRRISEAQDYIAKNYIRKDLQNPFVSIKGDKIYFLQESSATRKSYT*
Ga0116824_101827	Ga0116824_1018271	F041146	QIQKQEKVRPQEPRLEERTVMETIHLYQIDGGYTYWEAYSDYTNDYLFSLDDDDVGDYLAQNKDKDIRVYDQEPYNAMYHIHLEMDKWWGRDDYHLDDCPAIHDARERLDYLCEGCAAFEKWAKNKTYGDYNKIGVK*
Ga0116824_101920	Ga0116824_1019202	F019643	MNAMPKYYFNSGTLQLIYSTSKEPYEACRTIIHEINENDELDEFIYCDERGMRDYVSADPKTFVVETDDILRKEGYIK*
Ga0116824_101978	Ga0116824_1019782	F000754	EMNFNVNNAEFARNASVSTLFSGEPFGWKGNYVMNDMITTAVERNRPIITFTNTTASARKVDVAVFIGG*
Ga0116824_102164	Ga0116824_1021642	F003769	IKNITKTTKTTEKSVHLDAVYAVIENCYNNLQVVEYDCTGANYFLSSANIFAQLQELYASNMHYNEYVSLQSVMDIFANNITYYDEESLFTDVVKNTALEKINLQDYTCLSN*
Ga0116824_102205	Ga0116824_1022052	F050396	MRYNMNTKQARELVNALIKQKDTAVWRTWTNGVQKDYEDVKDRRNLCYGILGDKFTEGECKWIKLLVGCDKVHFTDNGRYLRLLGVRFDG*
Ga0116824_102507	Ga0116824_1025072	F057339	MKDYEVVYIDSHGDKQDYVVTSTDVRTAINNTFELVPHCKRIIRCTPKPMFED*
Ga0116824_102651	Ga0116824_1026511	F062687	VFDYEGVQPFFPLGESAAGDNPWKDKPSFVYDRMMVIHPNPFYPIKKEQIHYALKANPSDSMALGSAIQYILDGMDDVAQDINAYNKDRDYGIFFHHVRVFQTSTQVSSSGAQRNYTTNQFYVSKFIIETEYHYNDRKALLNR*
Ga0116824_102851	Ga0116824_1028511	F082549	LSNEQKEKLLEIVNKYKFIAGNYSSTMIQGVGHAYCDSGILSDGWAVEDVEILSEYLRDTVASTVNKKNKHGIVDETSVFYETDIVHTVGDDIIEMHTDGKRKAMWDTLYIGEVNDMLGSDAAILESSENALGYAWFLEAYLEAEEEKKSNKNGKK*
Ga0116824_102921	Ga0116824_1029212	F023490	MQYSCPENTVDTNVTYMRTREGPNHFRVYYKQGCCIRFTPKDVGAVFGVARFTPTVNKIRDWCYEMVKSYGSETDKTDDGYLNYIAKHGFGPEVHEEPNDNTKMVM*
Ga0116824_103095	Ga0116824_1030952	F070661	MSKLIRKFENSLDWLAAVAAGQADLRENHKLYTKVHRFYSKEGIVFTGDSETDYTIIVNYLSEDLA*
Ga0116824_103650	Ga0116824_1036501	F046081	KDLSEGSCAFVQNITDERVVIHWHDKTDPTKLISTQELNQPMFINTAHPVTLKNLGDKSAVVKYVDLNTVIENYTGI*
Ga0116824_103794	Ga0116824_1037942	F023879	TNGEYIYGTNLDIGKYSVKHKCECEREFDHVPPCKLEGQGGYSDGSKAFKYVGTDHDPMTHSHPPSKEQLHTDAWGKKVFKKTNGWDYETGEFIYNEKW*
Ga0116824_103856	Ga0116824_1038563	F004281	MIKGCVGFSYIKGNLFGTMILVRGKRTLDIPLPIGIYSVMAQLWKRKNILGKILFKESTKDFQ
Ga0116824_104176	Ga0116824_1041762	F099419	NGAPAGFGKEHYDKTPSPNSLAGGGSTSLLGTGGVLSGLFGANDGPYTYIGSQLGSNRGKITLGSIIRTANRLKNAKNLSKEGLKQEGFNILTGAIGRIGNTSDQAYGVPNTFIGRSASNLGSGIKAATKALIRNR*
Ga0116824_104359	Ga0116824_1043591	F070017	MKCDFCDTPLSDERAEIYSHCSSDNCVVMWRRMRLEDFALTLVPKQGFQIVYKDNNFLKVGGRSSGKVT*
Ga0116824_105078	Ga0116824_1050782	F050996	MKWSVTMKRPTKKSFYEYMSTRFKTKYRDPDGYLTLIDVIQEAQDDKKFMDLAELTLMSKADRLIYRNTMACMGIELTPYQVDEYLAIVEFGLEYIV*
Ga0116824_105409	Ga0116824_1054091	F058869	MNQYFVQVHRATEDPFNYPYLGKVQYFKVELMYHGFQLIEHPDFPGPYRARFIALHSKRSMISYVALKYTDVDFSYKYL*
Ga0116824_105655	Ga0116824_1056552	F063725	GANAATPAFAYTYQLTGTPAVRPEYYIRERRVVRAEITVERAVNITGLGSTGAFGSGFYIDDVFA*
Ga0116824_105695	Ga0116824_1056952	F084122	MFYYNVKFTNGESLVILADGDPVDEIPVEFQGDVIDVTTLCEVAV*
Ga0116824_105717	Ga0116824_1057171	F053981	RLVALGKKQDPDIYEPLSFMGDGFEWFVEYFFKFFNGDHTLTYTADYEPNFDYDRGIDGRGLSTLDGKPNVIQCKFKADPTKYLTNADNISNVAADAVINEGLEFNGKNVIIVTSCKGVHPKHAMANVHCISYNEIERRVDNNVIFWDNLRDIVDSQYVK*
Ga0116824_105953	Ga0116824_1059532	F003027	MKTANGNDKLGKENCIVVSRPVGDTCPSSCAFLGNGCYAEQTEKIYPGVRPAGMQNVITERGRIRSMIIDAERKGKSIRWHERGDWFLNGKLDTDYVDNVVWACESILADGGSLPDMWFYTHIYDSRLVSMNKYM
Ga0116824_105958	Ga0116824_1059581	F023488	SVFTAKLGNTNRLRMSEGFKLATDRQYAPFIHGKPIFRGFSPVKRTRPFFPPYKEGSSLAKWARRGQPKLNPFLVARAISKRGLKMKPFIGGVVYEKQKEIKDRGQEMLELIARDIARSVK*
Ga0116824_106159	Ga0116824_1061591	F020679	MSNHKLTHVKPMQVSMPESLYSVVYSETAFRGLTQHPCHFHTISEAQQFINDQCKPNHPCYIIQVPVIAYTS*
Ga0116824_106284	Ga0116824_1062841	F051479	MFIISCGDSYTEGEGLVDKQQAYPHIISRALKSKLENLAQSGASEYLITTQVEQAVKKKPDLILIGHTSEYRWQVWDVRKNHWQGFLVANHVIRNEKYYRNWVFSEQILDNNRKNDKRH
Ga0116824_106385	Ga0116824_1063851	F035554	QYPEGRLVSEIVEKTDKMVVFKTSFYTKDNVSPKCTGHGSKYSTEDHWLEKAEQKSRGRCLRVLLGSEPTAEEMEGIVPSKTTAPNKKSLDEKVKDLESEGLVEDISMKAQAVMDNIKDFALEITNQDLDLARNYTAQALGSMGISKTEVSINNLQSVKNKIQDIATMARTEID
Ga0116824_106585	Ga0116824_1065852	F030059	MNSNIKDNLFQIQEVANKALEEHKNSTERSSGVNYADLRVVDVWVKYSIHEEDLEYGVLIEECSPTAYDLQDYMLEYLKDNLPNNLGWSIYVELDW*
Ga0116824_106864	Ga0116824_1068642	F028484	IYDVIEMLNAFSEFSLDEFLAKDEKDLDEFECGWFEGDQARLEHLLNLFSMLVTEKRLEKIDNIEKLFEEFPSEKFQRNRNVGIDKTP*
Ga0116824_106967	Ga0116824_1069672	F031085	MSTKVRRWNPVAKHDHNKGGAHTDRKKDAKKYQSRKKELTKAQEREIL*