3300013049: Enriched Organic Plus compost microbial communities from Emeryville, California, USA - RNA 5th pass 30_C BE-Lig OP (Metagenome Metatranscriptome)

Overview

Basic Information

• IMG/M Taxon OID: 3300013049
• GOLD Reference (Study | Sequencing Project | Analysis Project): Gs0127392 | Gp0191769 | Ga0164286
• Sample Name: Enriched Organic Plus compost microbial communities from Emeryville, California, USA - RNA 5th pass 30_C BE-Lig OP (Metagenome Metatranscriptome)
• Sequencing Status: Permanent Draft
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Published?: N
• Use Policy: Open

Dataset Contents

• Total Genome Size: 30750883
• Sequencing Scaffolds: 3
• Novel Protein Genes: 4
• Associated Families: 4

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
Not Available	1
All Organisms → cellular organisms → Eukaryota → Haptista → Haptophyta → Prymnesiophyceae → Coccolithales → Coccolithaceae → Coccolithus → Coccolithus braarudii	2

Ecosystem and Geography

Ecosystem Assignment (GOLD)

• Name: Lignin-Adapted Enriched Soil Microbial Communities From Emeryville, California, Usa
• Type: Environmental
• Taxonomy: Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil → Lignin-Adapted Enriched Soil Microbial Communities From Emeryville, California, Usa

Alternative Ecosystem Assignments

• Environment Ontology (ENVO): terrestrial biome → anthropogenic environment → compost
• Earth Microbiome Project Ontology (EMPO): Free-living → Non-saline → Soil (non-saline)

Location Information

• Location: USA: Emeryville, California
• Coordinates
  • Lat. (^o): 37.83
  • Long. (^o): -122.29
  • Alt. (m): N/A
  • Depth (m): N/A

Associated Families

Family	Category	Number of Sequences	3D Structure?
F001904	Metagenome / Metatranscriptome	619	Y
F006133	Metagenome / Metatranscriptome	380	Y
F019939	Metagenome / Metatranscriptome	226	Y
F031471	Metagenome / Metatranscriptome	182	Y

Associated Scaffolds

Scaffold	Taxonomy	Length
Ga0164286_106906	Not Available	1101
Ga0164286_123116	All Organisms → cellular organisms → Eukaryota → Haptista → Haptophyta → Prymnesiophyceae → Coccolithales → Coccolithaceae → Coccolithus → Coccolithus braarudii	1228
Ga0164286_135099	All Organisms → cellular organisms → Eukaryota → Haptista → Haptophyta → Prymnesiophyceae → Coccolithales → Coccolithaceae → Coccolithus → Coccolithus braarudii	598

Sequences

Scaffold ID	Protein ID	Family	Sequence
Ga0164286_106906	Ga0164286_1069063	F031471	MRLTGFEAIEYAEKEGLTLHKSEDEFDPARSNLTIAEAEAIATEDPDLIWLEVPEDEYYGERKNMEPNR*
Ga0164286_112031	Ga0164286_1120311	F019939	APATAAASVSLIESFAFTSPADEQRIVSLVETAASADARAQALPTVFDSGREASRRFRHTDILAHRAGRARFTQVRANQPGQDTDATRAAYLRLYSTVYASFETLCAKRMPLAYLPYCNDMLKSYRFFAQGVNYGDRAEQICMNGNFCDSRSYIRRVTHNTYQREPGDA*
Ga0164286_123116	Ga0164286_1231161	F001904	MSSSRFVLLALVALLASLAYVSATSDFLQAVAAVEGDCHPECRWQCDDPVCPAVCHPVCERPKCQIHCEETECAKCKIHCDKPQCNVRCPKDLCEKKDCPKCETVCSPANCRTQCEAPAAVCTPMCEATKCDWKCKKPITCPKPKCELVCERPACDTRARTEGTKPGCCSCADQANLAATIRAANSLMEVDSEMSQMMPSFMEVMHTIKAKGQQGNDMCCKCAA*
Ga0164286_135099	Ga0164286_1350991	F006133	MKASALLSLRALLALFALCVLAAPLLSALSATPERKAQDVEDCVACRYVWLQVEMDVGNSQIEENIYDSFTQNCIEAQKAPIFYPACQDMFDGIDDMIGDYMDGYTVNQVCENARLCR*