3300012978: Hot spring water viral communities from Western Cape, South Africa - Brandvlei

Overview

Basic Information

• IMG/M Taxon OID: 3300012978
• GOLD Reference (Study | Sequencing Project | Analysis Project): Gs0126268 | Gp0177339 | Ga0157393
• Sample Name: Hot spring water viral communities from Western Cape, South Africa - Brandvlei
• Sequencing Status: Permanent Draft
• Sequencing Center: University of the Western Cape
• Published?: N
• Use Policy: Open

Dataset Contents

• Total Genome Size: 11115694
• Sequencing Scaffolds: 3
• Novel Protein Genes: 3
• Associated Families: 3

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage	2
All Organisms → cellular organisms → Bacteria	1

Ecosystem and Geography

Ecosystem Assignment (GOLD)

• Name: Hot Spring Water Viral Communities From Western Cape, South Africa
• Type: Environmental
• Taxonomy: Environmental → Aquatic → Thermal Springs → Hot (42-90C) → Acidic → Hot Spring Water → Hot Spring Water Viral Communities From Western Cape, South Africa

Alternative Ecosystem Assignments

• Environment Ontology (ENVO): aquatic biome → hot spring → spring water
• Earth Microbiome Project Ontology (EMPO): Free-living → Non-saline → Water (non-saline)

Location Information

• Location: Western Cape, South Africa
• Coordinates
  • Lat. (^o): -33.732496
  • Long. (^o): 19.413317
  • Alt. (m): N/A
  • Depth (m): N/A

Associated Families

Family	Category	Number of Sequences	3D Structure?
F042051	Metagenome / Metatranscriptome	159	Y
F076964	Metagenome	117	Y
F093488	Metagenome / Metatranscriptome	106	Y

Associated Scaffolds

Scaffold	Taxonomy	Length
Ga0157393_12862	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage	2033
Ga0157393_16101	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage	780
Ga0157393_16672	All Organisms → cellular organisms → Bacteria	637

Sequences

Scaffold ID	Protein ID	Family	Sequence
Ga0157393_12862	Ga0157393_128622	F093488	MADGLFYWDTREPFIGADIASVTLSTTDVALYPPSNFPVLGGQYWSRVGKKIRIRLFGRMTTGATPGNLTFDIYYGSGANATGTILASSAAVALTASQTNLSWMCEVTVHCRSIGSSGTLFCVGWALFNPSLIASTNQPILIPASAPVVSAAVDLTAANIISIQAKRSGSTTETMQVHDMEVVAMN*
Ga0157393_16101	Ga0157393_161012	F042051	MVTFGEISWDDDVFGDESKKNNSKDLFLRLDEGSNEMRIITQPHQYLVHRYKKEGDPGFGHRVYCSMAHGFCPLCAMGDKAKPRWLLGVISRKTGTYKILDISFAVFSQIRKLARNTQRWGDPTKYDIDIVVDKNGGATGYYSVQPVSK
Ga0157393_16672	Ga0157393_166722	F076964	MSDYKVWLRPPWGVGEPKEVDATPDVLVPLLVAGWAQCEPPAPKEEVKEDVHG*