3300012973: Fecal eukaryotic communites from dung pellets of Tule Elk in California, USA - Elk Dung E36 Day 36 Metagenome

Overview

Basic Information

• IMG/M Taxon OID: 3300012973
• GOLD Reference (Study | Sequencing Project | Analysis Project): Gs0116274 | Gp0141800 | Ga0123351
• Sample Name: Fecal eukaryotic communites from dung pellets of Tule Elk in California, USA - Elk Dung E36 Day 36 Metagenome
• Sequencing Status: Permanent Draft
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Published?: N
• Use Policy: Open

Dataset Contents

• Total Genome Size: 715029913
• Sequencing Scaffolds: 48
• Novel Protein Genes: 53
• Associated Families: 35

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
Not Available	24
All Organisms → cellular organisms → Bacteria	1
All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	2
All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Comamonadaceae	2
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	1
All Organisms → Viruses → Predicted Viral	3
All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Comamonadaceae → Ramlibacter → Ramlibacter tataouinensis	1
All Organisms → cellular organisms → Bacteria → Proteobacteria	1
All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Caulobacterales → Caulobacteraceae → Phenylobacterium → Phenylobacterium zucineum	1
All Organisms → cellular organisms → Eukaryota → Sar → Alveolata → Ciliophora → Intramacronucleata	1
All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Caulobacterales → Caulobacteraceae → Phenylobacterium	1
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales	1
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi	2
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → unclassified Caudoviricetes → Siphoviridae sp. ctjsp22	1
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes	1
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales	1
All Organisms → cellular organisms → Archaea → Euryarchaeota → Methanomada group → Methanobacteria → Methanobacteriales → Methanobacteriaceae → Methanobrevibacter → unclassified Methanobrevibacter → Methanobrevibacter sp.	2
All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Comamonadaceae → unclassified Comamonadaceae → Comamonadaceae bacterium	1
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Acidimicrobiia → Acidimicrobiales → Acidimicrobiaceae → unclassified Acidimicrobiaceae → Acidimicrobiaceae bacterium	1

Ecosystem and Geography

Ecosystem Assignment (GOLD)

• Name: Fecal Eukaryotic Communites From Dung Pellets Of Tule Elk In California, Usa
• Type: Host-Associated
• Taxonomy: Host-Associated → Mammals → Digestive System → Large Intestine → Fecal → Fecal → Fecal Eukaryotic Communites From Dung Pellets Of Tule Elk In California, Usa

Alternative Ecosystem Assignments

• Environment Ontology (ENVO): Unclassified
• Earth Microbiome Project Ontology (EMPO): Host-associated → Animal → Animal distal gut

Location Information

• Location: Point Reyes National Seashore, California, USA
• Coordinates
  • Lat. (^o): 38.04
  • Long. (^o): -122.5
  • Alt. (m): N/A
  • Depth (m): N/A

Associated Families

Family	Category	Number of Sequences	3D Structure?
F001230	Metagenome / Metatranscriptome	741	Y
F003009	Metagenome / Metatranscriptome	513	Y
F011188	Metagenome / Metatranscriptome	294	Y
F017505	Metagenome / Metatranscriptome	240	N
F019507	Metagenome / Metatranscriptome	229	Y
F021064	Metagenome / Metatranscriptome	220	Y
F028722	Metagenome / Metatranscriptome	190	Y
F036964	Metagenome / Metatranscriptome	169	Y
F037916	Metagenome	167	Y
F037930	Metagenome / Metatranscriptome	167	Y
F042737	Metagenome / Metatranscriptome	157	Y
F043727	Metagenome	155	Y
F048702	Metagenome / Metatranscriptome	147	Y
F049900	Metagenome	146	Y
F051611	Metagenome	143	Y
F053537	Metagenome / Metatranscriptome	141	Y
F058575	Metagenome / Metatranscriptome	134	Y
F059667	Metagenome / Metatranscriptome	133	Y
F060691	Metagenome / Metatranscriptome	132	Y
F061929	Metagenome / Metatranscriptome	131	Y
F062320	Metagenome / Metatranscriptome	130	Y
F066313	Metagenome	126	Y
F066344	Metagenome / Metatranscriptome	126	Y
F069784	Metagenome	123	N
F072921	Metagenome / Metatranscriptome	120	Y
F072949	Metagenome / Metatranscriptome	120	Y
F074001	Metagenome / Metatranscriptome	120	Y
F074260	Metagenome / Metatranscriptome	119	Y
F076729	Metagenome / Metatranscriptome	117	Y
F082505	Metagenome / Metatranscriptome	113	Y
F082826	Metagenome / Metatranscriptome	113	Y
F086058	Metagenome / Metatranscriptome	111	Y
F090176	Metagenome / Metatranscriptome	108	Y
F104183	Metagenome	100	N
F105520	Metagenome / Metatranscriptome	100	Y

Associated Scaffolds

Scaffold	Taxonomy	Length
Ga0123351_1001942	Not Available	15063
Ga0123351_1002134	All Organisms → cellular organisms → Bacteria	14162
Ga0123351_1002281	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	13558
Ga0123351_1003016	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Comamonadaceae	11451
Ga0123351_1006918	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	6910
Ga0123351_1023509	All Organisms → Viruses → Predicted Viral	3233
Ga0123351_1024833	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Comamonadaceae → Ramlibacter → Ramlibacter tataouinensis	3125
Ga0123351_1029621	Not Available	2787
Ga0123351_1030758	All Organisms → cellular organisms → Bacteria → Proteobacteria	2723
Ga0123351_1045745	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Caulobacterales → Caulobacteraceae → Phenylobacterium → Phenylobacterium zucineum	2097
Ga0123351_1061301	All Organisms → cellular organisms → Eukaryota → Sar → Alveolata → Ciliophora → Intramacronucleata	1718
Ga0123351_1096683	All Organisms → Viruses → Predicted Viral	1268
Ga0123351_1106378	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Caulobacterales → Caulobacteraceae → Phenylobacterium	1189
Ga0123351_1111905	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Comamonadaceae	1149
Ga0123351_1120214	All Organisms → Viruses → Predicted Viral	1095
Ga0123351_1125303	Not Available	1064
Ga0123351_1125522	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1063
Ga0123351_1131588	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales	1030
Ga0123351_1136190	Not Available	1006
Ga0123351_1136316	Not Available	1006
Ga0123351_1142981	Not Available	973
Ga0123351_1148582	Not Available	948
Ga0123351_1163642	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi	889
Ga0123351_1175666	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi	847
Ga0123351_1183767	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → unclassified Caudoviricetes → Siphoviridae sp. ctjsp22	821
Ga0123351_1185026	Not Available	817
Ga0123351_1186560	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes	813
Ga0123351_1190960	Not Available	800
Ga0123351_1208295	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales	755
Ga0123351_1216675	Not Available	735
Ga0123351_1220367	Not Available	727
Ga0123351_1233877	Not Available	698
Ga0123351_1233897	All Organisms → cellular organisms → Archaea → Euryarchaeota → Methanomada group → Methanobacteria → Methanobacteriales → Methanobacteriaceae → Methanobrevibacter → unclassified Methanobrevibacter → Methanobrevibacter sp.	698
Ga0123351_1235112	Not Available	696
Ga0123351_1239533	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Comamonadaceae → unclassified Comamonadaceae → Comamonadaceae bacterium	688
Ga0123351_1240695	Not Available	685
Ga0123351_1261475	Not Available	650
Ga0123351_1275801	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Acidimicrobiia → Acidimicrobiales → Acidimicrobiaceae → unclassified Acidimicrobiaceae → Acidimicrobiaceae bacterium	627
Ga0123351_1280264	Not Available	621
Ga0123351_1280437	Not Available	620
Ga0123351_1285802	Not Available	613
Ga0123351_1305474	Not Available	588
Ga0123351_1306814	Not Available	586
Ga0123351_1310929	Not Available	581
Ga0123351_1316282	Not Available	575
Ga0123351_1317341	Not Available	574
Ga0123351_1348012	All Organisms → cellular organisms → Archaea → Euryarchaeota → Methanomada group → Methanobacteria → Methanobacteriales → Methanobacteriaceae → Methanobrevibacter → unclassified Methanobrevibacter → Methanobrevibacter sp.	541
Ga0123351_1378527	Not Available	510

Sequences

Scaffold ID	Protein ID	Family	Sequence
Ga0123351_1001942	Ga0123351_10019426	F036964	MINLIDILKIIFPALMVAGALGSFVLNVITNWQNWPVSLQWIGAALLYTALLFRNQ*
Ga0123351_1002134	Ga0123351_10021345	F037916	VLYRWRAVAQGGSTVALKRDAQRKPRKDDAEARYKAEIDRLRAVVTEITAENLELKKKI*
Ga0123351_1002281	Ga0123351_10022817	F017505	VKPHFAIAPNFQCKGSWTDRLLLAEGDGWRAPHDDEVVGLTANEPSGDGAAVSSLFAVPVHMRTRFWAVLDEEAAAGTGDFVSFSGDFAEFLTFKNLPPPKDSVYELLVQDADGQVSADDVWALINFGDEPVLLAWPQLQLRLAPGEGCRMAAGLPPDVLRPVKDELNVLFAIRLGQA*
Ga0123351_1003016	Ga0123351_10030166	F105520	MDAKPKLDLPRTELDFLQRLLLDLQRRLQAGGDCHDEEHVAALELALAILQWDGTVPPPLDAQVGLGAAVESRLGPDAMCALRQWRTERRKALAPVQAPAR*
Ga0123351_1006918	Ga0123351_10069189	F090176	AVCGVEVPEDGFVFSLEPDCSRPMEADYVTKQVARLKDHLGIADKRPTTIALEDKALALYRSKPAPRPEGRSGPEPAGAMSYKEIGRRLGRSARWAQLAVVSAERREAAAKAGRAEMFDGSILALRKFTSSELLDAGFNVSAVAQRQGHGPQVLVKHYAKRRASADRKAADHLGRVIHRRASAAEQPTG*
Ga0123351_1023509	Ga0123351_10235094	F066313	MKEKFQKWMRRNNMMFSAIAGETFTNAEVVYTHIGLVAFLIVLGLAG*
Ga0123351_1023509	Ga0123351_10235096	F051611	MVVDKVTKEMLFKLNVGDQKVFTLPNYGKARSAQSYANSMKKATMGTKEQRVFKAVIGDPNPDNGQCGVTITRIA*
Ga0123351_1024833	Ga0123351_10248331	F074001	MRKNSPGTQLAQVSAKTDDVQRELEVASAELGLTHGALDRHLPPAQRNDDVAWAIAQNAALERKVAQAAEDLEEVVGMLEQVKAEVGA*
Ga0123351_1029621	Ga0123351_10296214	F028722	MQSCLEKRGIEERNNEIVRSDYNIEDQYGSTHKNAISDGDVKGKGTGHGGHTHWLPDCNMPTTTIDYSNFDTFNGGGIYDIEGRNDVGGRRKAMISSLYNQEYEYGANLVDTEMNLQQGQYQIR*
Ga0123351_1030758	Ga0123351_10307582	F069784	MESPMTKTANRQPLTVRLDPDSKKLFAEEAEKCGLEPGVAARQILELYVQRLRESGDYIQTLSDFSQALKKTA*
Ga0123351_1045745	Ga0123351_10457452	F086058	MTTYRAYRVDSRRHIQSAAWLDAPNDAAARAKAAELCDEGTPAVELWQATRLVDEIECADEEA*
Ga0123351_1061301	Ga0123351_10613013	F003009	LVWFQRNYFNTSILNLVKYFASLTVSFHDVHSLFGFFIILVVFSQLVSGTMLSFSLVPEAMMVPLVRDEEDIEDLYTDDFF*
Ga0123351_1096683	Ga0123351_10966832	F042737	MKLTEKSMEVYNYIKENGGRVSIEELAAGLNRTPRSVNANVTDLCSEKKGLAMREKVKGEGEDAKDITYVVLTEAGKTFVPSED*
Ga0123351_1106378	Ga0123351_11063782	F019507	MDVRVLVDIAIDEDPRAPCLWVPSEGWAEFCAAIDQRPNLIGAVIYRNKTIRDGGPLTDIVTGSDQGRRG*
Ga0123351_1111905	Ga0123351_11119052	F053537	MKYMHKAIWQADGNLVIRGNTRALLFRALDDARAELGRHGDAADPQAVRTLQALQDVLGAYDGALPSAADLLGDPQRERLARNLLKG*
Ga0123351_1120214	Ga0123351_11202141	F028722	SDYNIENQYGATHKDALSDGDAQGKGTGHGGHTHYLPDCTKPTTRIDYSNFDTENGGGCYDIKGRNGISGRERALAISMYNKEVPYGAKLVDTTANVNDGQYFVGQQIGNPNSNCG*
Ga0123351_1125303	Ga0123351_11253032	F072921	MKSKLSLSTDRKSASEGEYIEIRWACGACPDSLYLAIDSGCTQYSIAVSDSGVTRIPIPRSNGKMTVKLVGVISGKKVTESIDVRVKSTKKAGTKAPLSSRMKMFGEKMKAKWYVFRAQMKYWWLSQKKWQKVLWIALLALWLGLLFSSIGRKPEVKVSSDQIQTAYIFS*
Ga0123351_1125522	Ga0123351_11255222	F082505	MWPFESRKKKAVVVFHIDHNGLAKGAYFRGEADVLIIDERDPKNRVYRMGQETADDELRRKIGKHPLGRILDEQSSDDRHASPVLNLHWDGAARAS*
Ga0123351_1131588	Ga0123351_11315881	F036964	MNNICDILKIVFPALMVTGALGSLIVNIITKGNWATSLQWLGAMLLYTALLFRNK*
Ga0123351_1136190	Ga0123351_11361902	F060691	MLMAVEGMDPTLKMIFFAAAVVLFVLAAIGYSRGKVSFLAAGLAAFAIPFFWDALVAS*
Ga0123351_1136316	Ga0123351_11363162	F060691	MLMAVEGMDPTLKMIFFAAAVVLFALAAIGYSRGKVSFLAAGLAAFAIPFFWDALAAS*
Ga0123351_1142981	Ga0123351_11429812	F061929	MYKLNRRSMLGQSAVVGAALGLGTLGRTTAQEATPASWPIMGTEIAPGVVAEVFAGGPSLRAPGQTMYVARFTFQPGAEIFPHSHPGTTIDGVVSGTWGWTLVAGTAQLVRRAASGDPGPTEEVTEIGTEIILEPGDAIIYEDDVVHTARGAGAEPVVINSSQLLTAGAPRMTDMHMDMGTPQS*
Ga0123351_1148582	Ga0123351_11485821	F059667	KCKAKNLFKVALLTEKPPQLNSTKSCPIHGIALNILVITVAPHNDI*
Ga0123351_1163642	Ga0123351_11636421	F011188	MDTYNIYMDELPTGEEFDGEEMIEVEFRVVPNKEDDGDASANAVIAGLDLVDLINLRDALQQEIDNYALSALESAASQATAGDA*
Ga0123351_1167651	Ga0123351_11676512	F048702	VKIDKRIFKKEGEELQQYLHFRKRGGSVKPKKGKGSFDRKKFKKDIDN*
Ga0123351_1175666	Ga0123351_11756662	F037930	SLESLRTERRYANVIRLFLAGELPNFTHLRHVHVANILRHHPYGRELMHLGLQTMAHRAFIPHKYSAEITDRYWDQLDGTLPDPTEFDDLPGGASGRPDSTG*
Ga0123351_1183767	Ga0123351_11837674	F036964	MGNNIIDILKIVFPGLMVLGATGSLVVNIIDKGNWATSLQWIGASLLYTALLFRNK*
Ga0123351_1185026	Ga0123351_11850261	F066344	MMSQNDSKALVARASQINTQAKIAQEEIIHKLKIEKTNVEMQIQGLTDFAPDTTDSLRPGVKGWNPNKWAADLQEAKTRLYTLGVELKIAQATYDEFFGGDDEDVADGE*
Ga0123351_1186560	Ga0123351_11865603	F036964	MENIINILKMVFPGMMVAGALGSLVVNLVSKGDWPTSLQWIGASLLYTALLF
Ga0123351_1189739	Ga0123351_11897392	F058575	MDPAYCGGAQELLEQAEYLRRTNRFGEAMNYYRAAAEAPDATDEIRRKSLASVELIQEI
Ga0123351_1190960	Ga0123351_11909602	F049900	VGLNPFRQHRRSPADIVMVAAALLACVALVAWALFG*
Ga0123351_1208295	Ga0123351_12082951	F058575	MKARELLEKAEELRRNCRFGEAINFYRAAAAAPDATDEIKRKSLASVELMQEINGFVNVDLMNP*
Ga0123351_1216675	Ga0123351_12166751	F062320	MKEFLEIMGKDIMSENFTRKEYVVYGIVAPLVLVLVCGLVGSLA*
Ga0123351_1220367	Ga0123351_12203671	F104183	MRQEEFELKTKKAAKEFANKKKVASQPETQFVKGALWAFDVLTQGRAVADYEEQLRRDVCARFGIDEPEQWQELLISETATMMADRDGMQQDILTEGRLLEKFDKNMNPYKESNPLYVHLKELQRSIGMQREHLGLTAKSSKKMESPKTHDVKDDP
Ga0123351_1224366	Ga0123351_12243662	F058575	MIRQIMGHFYEGMTANELYEAGTEHRKNKRFGEAINAFRAAAAAPDASEDIKRKSLASVELIQEINGFVNVDLMNP*
Ga0123351_1233877	Ga0123351_12338772	F049900	MNPFRPHRRSPADYVMVAAAILVCLALVGWALFG*
Ga0123351_1233897	Ga0123351_12338972	F076729	MNLTDNEVLKFQRGGPVFIEDICAVYSLTLGEIVDVGYDKF*
Ga0123351_1235112	Ga0123351_12351121	F066313	MKQRFEKWMSRNNMMFSAMAGETFTNAEVVYTHIGLVAFLIVLGLAG*
Ga0123351_1239533	Ga0123351_12395331	F105520	QRRLQAGGDCHDEEHVAALELALAILQWDGTMPPELDAQVGLGAAVESRLGVDAMCAYRQWRTERRKTLVPVQAPAR*
Ga0123351_1240695	Ga0123351_12406952	F043727	MNISMTNKETIDRRATYIIPAVFKAEDALQKAKPEWKERLKKLGQPGGEDPSKVAEEYCREIATIIVRFASDYNEEEDEE*
Ga0123351_1261475	Ga0123351_12614751	F104183	DASKAMLKKKAPTRPETQFVKGALWAWEMLTQGRTVSEYEEQLRQDVCARFNIEKPERWQELLISETATMMADRDGMQQDILTEGRLLEKFDKNMNPYKESNPLYVHLKELQRSIGMQREHLGLTNKSSKKMESPKTHDVKDDPLGEYFEGIR*
Ga0123351_1272806	Ga0123351_12728061	F021064	KTILLKGLNCIPLDLLISVIGRRSSINIAANIAITPNNLLGIDLNIA*
Ga0123351_1275801	Ga0123351_12758012	F001230	MTPDDAVRNAHRFFEVNSGWAPPDVDTLSEWLADGVCRCPDECLATPDGWCGHGIASWHLVLRALEGSDRFPTE*
Ga0123351_1280264	Ga0123351_12802641	F036964	MNNLIEILKMVFPGMMVAGAAGSLILNIITNPGDWPVSLQWFGAAL
Ga0123351_1280437	Ga0123351_12804371	F062320	IMGKDIMSENFTRKKYVVYGIIAPLVLVLVCGLVGSLA*
Ga0123351_1285802	Ga0123351_12858022	F072949	MAKRKSSSIGKVVVDKNAAQFMRTAANLARKGKTNKKLHGRNANPRALKYNIEK*
Ga0123351_1305474	Ga0123351_13054742	F082826	MKYTVELNYNASIVVTVEADNEGEALDKARDIAEESDIEQFTITNERESQILATN*
Ga0123351_1306814	Ga0123351_13068141	F058575	MNEFDMSAKELLERAEELRRNCMFGEAINFYRAAAQAPDASEEIKRKSLASVELMQEINGFVNTDLMNP*
Ga0123351_1310929	Ga0123351_13109291	F072921	LLFGKRIARIYGKQLFQPMKKKMTLSTDRKSASEGEYIEIRWACDACPDSLYLAIDSERTQYSIAVSDSGTTRIPVPKSNGKMTVKLIGIISGKKVIESVDVRVKGAKRAKSNAPLSSRMKMFGEKMKAKWYVFRANIKYWWLSQKKWQKALWIALLALWLGLLFSSKGRKPEVKVSSDQVQTAYLMR*
Ga0123351_1316282	Ga0123351_13162821	F036964	DILKIVFPALMVLGAAGSLILNFIVDKQNWPVSLQWFGAALLYTALLFRNK*
Ga0123351_1317341	Ga0123351_13173411	F058575	NAKELLERAEELRRNNRFGDAINYYKAAAEAPDATDEIVRKSLASAELMQEINSFVNVDLMNP*
Ga0123351_1348012	Ga0123351_13480121	F074260	MAEKKKTAKKWDFPKDGKPFDELPVIVKRNRKLLYEYIRTGELP*
Ga0123351_1378527	Ga0123351_13785271	F058575	MSAGSARELLEKAEELRRNCCFGEAINFYRAAAEAPDATDEIKRKSLASVELMQEINGFVNVDLMNP*