3300012888: Solar panel surface microbial communities from Lawrence Berkeley National Laboratory, California, USA - R

Overview

Basic Information

• IMG/M Taxon OID: 3300012888
• GOLD Reference (Study | Sequencing Project | Analysis Project): Gs0127370 | Gp0191374 | Ga0160429
• Sample Name: Solar panel surface microbial communities from Lawrence Berkeley National Laboratory, California, USA - R
• Sequencing Status: Permanent Draft
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Published?: N
• Use Policy: Open

Dataset Contents

• Total Genome Size: 590103071
• Sequencing Scaffolds: 25
• Novel Protein Genes: 27
• Associated Families: 6

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
All Organisms → cellular organisms → Bacteria	10
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Deinococcus-Thermus → Deinococci → Deinococcales → Deinococcaceae → Deinococcus	5
Not Available	5
All Organisms → cellular organisms → Eukaryota → Opisthokonta → Fungi → Dikarya	1
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Deinococcus-Thermus → Deinococci → Deinococcales → Deinococcaceae	1
All Organisms → cellular organisms → Eukaryota → Opisthokonta → Fungi → Dikarya → Ascomycota → saccharomyceta → Pezizomycotina → leotiomyceta → dothideomyceta → Dothideomycetes → Pleosporomycetidae → Pleosporales	1
All Organisms → cellular organisms → Eukaryota → Viridiplantae → Streptophyta → Streptophytina → Embryophyta → Tracheophyta → Euphyllophyta → Spermatophyta → Magnoliopsida → Mesangiospermae → eudicotyledons → Gunneridae → Pentapetalae → rosids → fabids → Malpighiales → Rhizophoraceae → Rhizophora → Rhizophora mucronata	1
All Organisms → cellular organisms → Eukaryota → Opisthokonta → Fungi → Dikarya → Ascomycota	1

Ecosystem and Geography

Ecosystem Assignment (GOLD)

• Name: Solar Panel Surface Microbial Communities From Lawrence Berkeley National Laboratory, California, Usa
• Type: Engineered
• Taxonomy: Engineered → Built Environment → Solar Panel → Unclassified → Unclassified → Solar Cell Surface → Solar Panel Surface Microbial Communities From Lawrence Berkeley National Laboratory, California, Usa

Alternative Ecosystem Assignments

• Environment Ontology (ENVO): Unclassified
• Earth Microbiome Project Ontology (EMPO): Free-living → Non-saline → Surface (non-saline)

Location Information

• Location: USA: Building 30, Lawrence Berkeley National Lab, Berkeley, California
• Coordinates
  • Lat. (^o): 37.876387
  • Long. (^o): -122.246777
  • Alt. (m): N/A
  • Depth (m): N/A

Associated Families

Family	Category	Number of Sequences	3D Structure?
F002654	Metagenome / Metatranscriptome	539	Y
F021064	Metagenome / Metatranscriptome	220	Y
F045048	Metagenome / Metatranscriptome	153	Y
F059667	Metagenome / Metatranscriptome	133	Y
F088701	Metagenome / Metatranscriptome	109	N
F104247	Metagenome	100	Y

Associated Scaffolds

Scaffold	Taxonomy	Length
Ga0160429_1000658	All Organisms → cellular organisms → Bacteria	25531
Ga0160429_1000972	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Deinococcus-Thermus → Deinococci → Deinococcales → Deinococcaceae → Deinococcus	17586
Ga0160429_1002243	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Deinococcus-Thermus → Deinococci → Deinococcales → Deinococcaceae → Deinococcus	10304
Ga0160429_1002683	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Deinococcus-Thermus → Deinococci → Deinococcales → Deinococcaceae → Deinococcus	9314
Ga0160429_1005603	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Deinococcus-Thermus → Deinococci → Deinococcales → Deinococcaceae → Deinococcus	6271
Ga0160429_1009787	All Organisms → cellular organisms → Bacteria	4611
Ga0160429_1013070	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Deinococcus-Thermus → Deinococci → Deinococcales → Deinococcaceae → Deinococcus	3888
Ga0160429_1015238	All Organisms → cellular organisms → Bacteria	3554
Ga0160429_1015384	All Organisms → cellular organisms → Bacteria	3534
Ga0160429_1022995	Not Available	2767

Sequences

Scaffold ID	Protein ID	Family	Sequence
Ga0160429_1000658	Ga0160429_100065817	F104247	MLAGMPDPSHPLRLYPTEAAAKRAGLQLADFSGERLPTTLYALLSEGEKKSIYLLSSAYRLTVAEQHWVAEHRATVTKLGRFHVGRGFSPLQLNMRREPRG*
Ga0160429_1000972	Ga0160429_100097216	F104247	MSSTPFPLRLYPTEATAKKAGLLLADFRGERLSMVLYALLPEGEKKPTYLLSSSIRLTVAEKRWVEEHQATVTKLGSFHPGRNFAPLQTNMVRQRKSAQQE*
Ga0160429_1002243	Ga0160429_10022434	F104247	VPLRLYPTEAAAKKAGLQLADFSGARLCTTLYALLPAGEKKPTYLLSSTYRLTVAEKRWAEEHQATVTKLGRFPAGGSFMPLQTNMLRMRKTKP*
Ga0160429_1002683	Ga0160429_10026832	F104247	VTGTPSPLRLFPTEAAAKKAGLVLADFRGERLSVVLYALLPEGEKKSTYLLSSSIRLTVAERRWVEEHQATVTKLGTFYPGRNFAPLQINMLRQRKSTEQD*
Ga0160429_1005603	Ga0160429_10056037	F104247	MSISPPLRRLYPTEIAANKAGLKLADFSGERLATTLYAFLPAGEKKLTYLLSSTYRLTVAEKRWVEEHQATVTKLGQFPAEGNYMPLQTNTLRKKKTE*
Ga0160429_1009787	Ga0160429_10097874	F104247	MPSTPLPLRLYPTEAAARKAGLILADFRGKRLTVVLYALLPEDDKRPIYLLSSSVRLTVPEKRWVEEHRATVTKLGTFYPGRNFAPLQTNMVRGQKLAAQE*
Ga0160429_1013070	Ga0160429_10130703	F104247	MFSTPPTLRLYPTEAAAKKAGLALADFRGERLTLVLYALLPEGEKPIYLLSSSIRLTVAEKRWVEEHRAAVTKLGTYYPGRNFAPLQTNMVRKQKSAEQG*
Ga0160429_1015238	Ga0160429_10152384	F104247	MPSTSPPLRLYPTEAAARKAGLALADFRGERLSMVLYALLPEGEKKPTYLLSNSIRLTVAEKRWVEEHQATVTKLGTFHPGRNFAPLQMNMVRRQKPTEQK*
Ga0160429_1015384	Ga0160429_10153841	F104247	VTSTPSPLRLFPTEAAAKKAGLALADFRGERLVMVLYALLPEGEKKFTYLLSSSIRLTTAEKRWVEEHRAAVTKLGTYHPGRNFAPLQTNMVRQKKPDGQG*
Ga0160429_1022995	Ga0160429_10229953	F059667	MCIKAKAANTKGNTKCKAKNLFKVALLTEKPPQINSTISCPIQGIALIRLVITVAPHSDICP*
Ga0160429_1031585	Ga0160429_10315852	F104247	VAAKKAGLKLADFSGERLATTLYALLPAGEKKPTYLLSSTYRLTVAEQRWAEEHQATVTKLGRFPVGGNYMPLQTNMLRKKTVE*
Ga0160429_1046411	Ga0160429_10464113	F021064	TNTKNAILLKGLNCIPLKLDKSVKGITSKANIAENIAITPNNLLGIDLKIA*
Ga0160429_1049317	Ga0160429_10493171	F059667	KCNEKNLFNVALFTEKPPQMNSTISCPTQGIALIKLVITVAPHKLICP*
Ga0160429_1067212	Ga0160429_10672122	F104247	VAAKKAGVKLADFSGERLATTLYALLPVGEKKPTYLLSCTYRLTVAEKRWAEEHQATVTKLGRFPVGGNYMPLQTNMLRKKKTAE*
Ga0160429_1071179	Ga0160429_10711793	F088701	VAVVLKRPEKIPIPLFKNRKNKLSYAIKAEISKIVIVALEYKIDLSRLSVIELDKSK
Ga0160429_1075010	Ga0160429_10750103	F045048	MDSIPKGGHLAPSSTVGERALWKKDQKIAKKNSASDIINKATPMFIPLCTASV*
Ga0160429_1086825	Ga0160429_10868253	F104247	MPVSPIPLRLYPTEAAAKKAGLKLADFSGERLATTLYALLPAGEKKPTYLLSSTYRLTVAEKRWAEEHQATVTKLGRFPAGSNYMPL
Ga0160429_1106381	Ga0160429_11063811	F104247	MPVSPIPLRLYPTEAAARKAGLKLAEFSGERLATTLYALLPAGQKKPTYLLSSTYRLTVAEQRWAEEHQASVTKLGRFPVGGNYMPLQTNMLRKKKTAE*
Ga0160429_1108192	Ga0160429_11081921	F088701	VAVVLKGPEKIPIPLFKNRKNKLSYAIKAEISKIVIVALEHNIDLSRLSVIELDKSKMIN
Ga0160429_1150718	Ga0160429_11507181	F002654	DKVVCLKGNSPEQELKVPKLLLSEIKEVFFIYNQEIGLEAAIF*
Ga0160429_1166750	Ga0160429_11667501	F104247	MPSTPLPLRLYPTEAAARKAGLALSDFRGERLTLVLYALLPADDKKPTYLLSSSIRLTVPEKRWVEEHRATVTKLGTFYPGRSFAPLQTNMVRGQKPAAQE*
Ga0160429_1183593	Ga0160429_11835933	F088701	VVLKRPEKIPIPLFKNRKNKLSYAIKAEISKIVIVALEYKIDLSRLSVMELDKSKKINDVINT*
Ga0160429_1201941	Ga0160429_12019412	F059667	MCIKAKAANTKGSTKCKAKNLFKVALLTEKPPHINSTISCPTQGIALIRLVITVAKS*
Ga0160429_1245358	Ga0160429_12453582	F059667	MCIKAKAANTKGSTKCKAKNLFKVALLTEKPPHINSTISCPTQGIALIRLVITVAPHNDICPYGKT*
Ga0160429_1277536	Ga0160429_12775361	F104247	MAKPPLPLRLYPTEVAAKKAGLQLADFSKARLSTLLYALLPAGEKKPIYLLSSTYRLTVAEKRWAEEHQATVTKLGRFLAGGSFMPLQINMLRTRNAKP*
Ga0160429_1292263	Ga0160429_12922632	F104247	MPSTPPALRLFPTEVAAKKAGLALADFRGERLTIVLYALLPENEKKPIYLLSSSIRLTVAEQRWVEGHRATVTKLGTYSPGRNFA
Ga0160429_1312120	Ga0160429_13121201	F021064	IKKLATKIKKAILLKGLNCKPLLLPRSVKGITNNINIAANIDITPNNLLGIDLKIA*