3300012009: Saline lake microbial mat microbial communities from La Brava Lake, II Region de Antofagasta, Chile - La Brava 201312

Overview

Basic Information

• IMG/M Taxon OID: 3300012009
• GOLD Reference (Study | Sequencing Project | Analysis Project): Gs0126207 | Gp0175632 | Ga0153773
• Sample Name: Saline lake microbial mat microbial communities from La Brava Lake, II Region de Antofagasta, Chile - La Brava 201312
• Sequencing Status: Permanent Draft
• Sequencing Center: INDEAR Instituto de Agrobiotecnologia Rosario
• Published?: N
• Use Policy: Open

Dataset Contents

• Total Genome Size: 752080516
• Sequencing Scaffolds: 8
• Novel Protein Genes: 9
• Associated Families: 9

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
All Organisms → cellular organisms → Archaea → Asgard group → Candidatus Lokiarchaeota → unclassified Lokiarchaeota → Candidatus Lokiarchaeota archaeon	1
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → Anaerolineae → Anaerolineales → unclassified Anaerolineales → Anaerolineales bacterium	1
All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Myxococcales → Cystobacterineae → Myxococcaceae → Myxococcus	1
Not Available	3
All Organisms → cellular organisms → Bacteria → PVC group → Planctomycetes → Planctomycetia → Gemmatales → Gemmataceae	1
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi	1

Ecosystem and Geography

Ecosystem Assignment (GOLD)

• Name: Saline Lake Microbial Mat Microbial Communities From La Brava Lake, Ii Region De Antofagasta, Chile
• Type: Environmental
• Taxonomy: Environmental → Aquatic → Non-Marine Saline And Alkaline → Hypersaline → Microbial Mats → Saline Lake Microbial Mat → Saline Lake Microbial Mat Microbial Communities From La Brava Lake, Ii Region De Antofagasta, Chile

Alternative Ecosystem Assignments

• Environment Ontology (ENVO): aquatic biome → saline lake → microbial mat material
• Earth Microbiome Project Ontology (EMPO): Free-living → Saline → Hypersaline (saline)

Location Information

• Location: II Region de Antofagasta, Chile
• Coordinates
  • Lat. (^o): -23.730056
  • Long. (^o): -68.246861
  • Alt. (m): N/A
  • Depth (m): N/A

Associated Families

Family	Category	Number of Sequences	3D Structure?
F011196	Metagenome / Metatranscriptome	294	Y
F013484	Metagenome / Metatranscriptome	271	Y
F015419	Metagenome / Metatranscriptome	255	Y
F026445	Metagenome / Metatranscriptome	198	Y
F028211	Metagenome	192	Y
F029285	Metagenome / Metatranscriptome	189	Y
F029940	Metagenome / Metatranscriptome	187	Y
F075043	Metagenome / Metatranscriptome	119	Y
F083361	Metagenome / Metatranscriptome	113	Y

Associated Scaffolds

Scaffold	Taxonomy	Length
Ga0153773_1021048	All Organisms → cellular organisms → Archaea → Asgard group → Candidatus Lokiarchaeota → unclassified Lokiarchaeota → Candidatus Lokiarchaeota archaeon	6352
Ga0153773_1022059	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → Anaerolineae → Anaerolineales → unclassified Anaerolineales → Anaerolineales bacterium	6118
Ga0153773_1070210	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Myxococcales → Cystobacterineae → Myxococcaceae → Myxococcus	2494
Ga0153773_1073822	Not Available	2404
Ga0153773_1082546	Not Available	2214
Ga0153773_1085606	All Organisms → cellular organisms → Bacteria → PVC group → Planctomycetes → Planctomycetia → Gemmatales → Gemmataceae	2155
Ga0153773_1090324	Not Available	2071
Ga0153773_1159672	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi	1356

Sequences

Scaffold ID	Protein ID	Family	Sequence
Ga0153773_1021048	Ga0153773_10210486	F029940	MSSGEDSVDKETFLEKFEELSLRIEQLTEEVSKMKRKLDKRNKIDRSFGLKAIHYSQPLSFTKDVFGIGSPTKEYLLSIRAVTEQWKGRKNDFLIAIRQQEKETQQDLKALGIRIPVSNIKNLRILCREIISLLYIACELKNIEINDILREILTDVNEDGNEMMREIKNKFIF*
Ga0153773_1022059	Ga0153773_10220592	F075043	MLSEIRKKQLREMGAPDSKVREIGEKFTWVDQEMDGFGLHRSEKLSEVMTSGDFTYAILEFVQRKMLDSYERKRFDFEPLVKMDTVPNFLPVTRYQNRCGLQDLEFVGEKGQARAGNLADGAKRQWQVWRFEKQFDFSFEALKNDDLGYFENTTDLMGEAARRTLEKYVSRFYTNATSIDALTGAGALYSQTGRLTSTRVSEARMAFNQRTDDCSEPINAQLDYVVIHSGLVDTAQQIQQSTLVPELATNAANIVRRTRFIEDPYITGTAPNLPWWAFSVGLDPLVLARMQGMAGPMILRKRSDIESVTSLLGSGSAVDPILGDFDSGNVVVKVMDVWGTYIDSSNGNLVDIGGAYYSSGTAP*
Ga0153773_1070210	Ga0153773_10702101	F028211	MKSIWMGIAPSSERTRVIAMTGPSKPILKACLASDPKHPRALATLLEAVALWQGYPVRAALCVGDSGHSYDSNLYREAFLDDGGALYSVAWVPSGEHRQRRTRLSGLGSFRDLERLVVEEVAR*
Ga0153773_1073822	Ga0153773_10738221	F029285	MKNKADYSKYECPYSHLEKESGHELHGPEGYEDVYSVWCTCGFRAPVFYLEPEDLGLKLKNETDVATCA*
Ga0153773_1082546	Ga0153773_10825464	F015419	MKYELKVTDENGNEYSYNVMRSSFDESKNLNDFILEALSISEDKRRLPFMIQCPNGLEVHPSLKMKFENYGSSLLGDKLEAMMVTWRD*
Ga0153773_1085606	Ga0153773_10856062	F011196	MEVREMGHDATVRAADGYVAQKKAEFLAHAEQAFDRMFGADGQNGLVTFQEREDRACEVGDGLTRWLMAEHLALDPVGGTSIERDCPICGGPVRDESAGQAEMELREFQTLRGKIEYRRAAARCPRCRKIFFPA*
Ga0153773_1090324	Ga0153773_10903241	F013484	MNFDFSGCTLSTEHQVIVNALNKFLAWLPDDEGSAALRLALLVLEAANVAPQAVLARVVGLNQDRSVRLYKQRLQEEGLAGLFDHPIPGRPAITTKTEVEKALLQVILEAVIQEHALPDDTFLAERVNQSLQETQEPKVTASMVETIRLRWGIRRPNLTQQLQAAQASASPEPEQARLGQTRVGGAFILAVLLVETGWLQLTHLLPMDANYAVTATQWLLTAIFTVIFGVRRAFHLDDVRDIGFALVTGRPRPLTHGTFQHLLHAISGEKARAFYAATARLVVQALGEGIRRISLDGHNRPRYTRIVDVVKGKIGNTGRILKAEELVLAYDLDAHMWLAVRVYQGTKKLSKGVVEIVEEILKHRGDLDGLLRIFSDKGAYSGRIFQTLAAEARVRFYIPAVRYPSNVEQWEQLQDTDFDRGPFIFDKHADLPEDQRPVYRLADTEMEINVWEDQKVVDTVNLRAVVLHDPEGEKPAERWPVAFLTDDRDIEARTLLNEYGDHWGQEFAHRIGKHDLCLDILPPGYVLRTRRDEQGQLVREVEEDDTAFFLSAWLRCLVFNLMTCFAQAMGGEYTKMWAGTLLRKFIRRPATLYLIDKELHVVFDPFPDQDEFQPLLDKLNAKRTALPWLNNLVVQFRIADEEPLHPLTELEKRNRLFGDG
Ga0153773_1140421	Ga0153773_11404211	F083361	VDALNELLTWLPDDDDSEAALRLALMVLEAADIAPQAVLAQVVGLNQDRSVRMYKQRLRDEGLSGLFDHPITGRPAITTKTEVEKVLLQVILDAVIQEHSLPDDSILAERVNQRLQEAQDQEVVHVTASMVETIRLRWGIQRPILTQQLQSTQPSADPEPEQARLGQTRAGGAFILAVLLVETGWLKLCHLLPMAANYAVTAMQWMLTAIFAVIFGVQRAFHLDDERDIGFALVTGRPRPLTHGTFQHLLHRIPGEKARAFYAATAQMEVQSLGEGIRRISLDGHNLPRYTRIVELIKGKIGNTGRILKAEELVLAYDLDACRWLAVRVYQGTKKLSKGIVEIVREILEHRGDLSGLLRIFADKGAYGGHIFQALDAEEQVRFYIPAVRYPSNVEQWEQLQDTDFDSEPFIFDKHADLPADQQPVYRLADTEMEINVWEGQKVIDTIDLRAVVLQDPEGEKPAERWPVAFLTDDQDIDARALLNEYGDHWGQEFAH
Ga0153773_1159672	Ga0153773_11596721	F026445	MTSIAETKRKRQNRTVTLHLGNTLAEYQDMISTEKGIREVIRRVEVADSLNWGCLARGHNENCPRRLRFTHHDDYRRWAKHFDGMRSLVTILRVRCLDCGAVFTVHPSFIVRYKRYDTDAIEKFATLLFITEDSYRMAGVSQALGMDKQREGTWVALEETAQTSISPTVLWSLMQWLGQLSPAQLNLALNVAPPTHVIEDEKHTKECGAKTYVPIVYAPKEALIWWIDYIDSVSETALHDSLERFKAISERLTCIVGATVDGWDPAHKALQAAFPGITLAECHFHAMLKLGQHLATYKRQRKKAGRPVSEQEEANIRQAFSDVLNAPTSDAYRKALDALPDAFEHEPLASRKDSLTVKQTLFQAWTTDCQLALVSTALDQCMKFLNRKLDNMQTLHTAQSGLATVNAWAITRN