NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Sample 3300011391

3300011391: Soil microbial communities from meander-bound floodplain in the East River, Colorado, USA - East River MetaG ERMLT163_2



Overview

Basic Information
IMG/M Taxon OID3300011391 Open in IMG/M
GOLD Reference
(Study | Sequencing Project | Analysis Project)
Gs0118068 | Gp0155848 | Ga0137331
Sample NameSoil microbial communities from meander-bound floodplain in the East River, Colorado, USA - East River MetaG ERMLT163_2
Sequencing StatusPermanent Draft
Sequencing CenterDOE Joint Genome Institute (JGI)
Published?N
Use PolicyOpen

Dataset Contents
Total Genome Size74356556
Sequencing Scaffolds38
Novel Protein Genes39
Associated Families39

Dataset Phylogeny
Taxonomy GroupsNumber of Scaffolds
All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium RBG_16_42_71
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Ignavibacteriae → Ignavibacteria → Ignavibacteriales1
All Organisms → cellular organisms → Bacteria9
All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium2
All Organisms → cellular organisms → Bacteria → FCB group1
All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium4
Not Available11
All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria1
All Organisms → cellular organisms → Bacteria → Proteobacteria1
All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → unclassified Betaproteobacteria → Betaproteobacteria bacterium SG8_401
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → Anaerolineae → Anaerolineales → Anaerolineaceae → unclassified Anaerolineaceae → Anaerolineaceae bacterium1
All Organisms → cellular organisms → Archaea → TACK group → Candidatus Bathyarchaeota → unclassified Candidatus Bathyarchaeota → Candidatus Bathyarchaeota archaeon1
All Organisms → cellular organisms → Bacteria → Proteobacteria → Zetaproteobacteria → unclassified Zetaproteobacteria → Zetaproteobacteria bacterium1
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Ignavibacteriae → Ignavibacteria → unclassified Ignavibacteria → Ignavibacteria bacterium1
All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → unclassified Bradyrhizobium → Bradyrhizobium sp. Rc2d1
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales → unclassified Bacteroidales → Bacteroidales bacterium1

Ecosystem and Geography

Ecosystem Assignment (GOLD)
NameSoil And Sediment Microbial Communities From The East River, Co, Usa
TypeEnvironmental
TaxonomyEnvironmental → Aquatic → Sediment → Unclassified → Unclassified → Soil → Soil And Sediment Microbial Communities From The East River, Co, Usa

Alternative Ecosystem Assignments
Environment Ontology (ENVO)terrestrial biomeflood plainsoil
Earth Microbiome Project Ontology (EMPO)Free-living → Non-saline → Subsurface (non-saline)

Location Information
LocationUSA: East River, Colorado
CoordinatesLat. (o)38.9226Long. (o)-106.9507Alt. (m)N/ADepth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F004605Metagenome / Metatranscriptome431N
F009467Metagenome317Y
F011513Metagenome / Metatranscriptome290Y
F016290Metagenome248Y
F021563Metagenome / Metatranscriptome218Y
F024820Metagenome / Metatranscriptome204Y
F026597Metagenome197Y
F027192Metagenome / Metatranscriptome195Y
F028858Metagenome / Metatranscriptome190Y
F029138Metagenome / Metatranscriptome189Y
F031175Metagenome / Metatranscriptome183Y
F031935Metagenome / Metatranscriptome181Y
F034985Metagenome / Metatranscriptome173Y
F037999Metagenome / Metatranscriptome167Y
F041284Metagenome / Metatranscriptome160Y
F043160Metagenome / Metatranscriptome157N
F044511Metagenome / Metatranscriptome154Y
F045136Metagenome153Y
F047155Metagenome / Metatranscriptome150Y
F048673Metagenome / Metatranscriptome148Y
F056248Metagenome137N
F058543Metagenome135N
F059923Metagenome133Y
F066277Metagenome127Y
F066903Metagenome126Y
F069002Metagenome / Metatranscriptome124Y
F069627Metagenome / Metatranscriptome123Y
F070913Metagenome122N
F074797Metagenome / Metatranscriptome119Y
F076224Metagenome118Y
F082880Metagenome / Metatranscriptome113Y
F084884Metagenome / Metatranscriptome112Y
F087945Metagenome110N
F089704Metagenome / Metatranscriptome108N
F098452Metagenome / Metatranscriptome103Y
F098853Metagenome / Metatranscriptome103Y
F099499Metagenome / Metatranscriptome103N
F100587Metagenome102Y
F105011Metagenome / Metatranscriptome100N

Associated Scaffolds

ScaffoldTaxonomyLengthIMG/M Link
Ga0137331_1000007All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium RBG_16_42_78674Open in IMG/M
Ga0137331_1000151All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Ignavibacteriae → Ignavibacteria → Ignavibacteriales2618Open in IMG/M
Ga0137331_1001507All Organisms → cellular organisms → Bacteria1468Open in IMG/M
Ga0137331_1005417All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium1021Open in IMG/M
Ga0137331_1006317All Organisms → cellular organisms → Bacteria977Open in IMG/M
Ga0137331_1008686All Organisms → cellular organisms → Bacteria → FCB group891Open in IMG/M
Ga0137331_1008791All Organisms → cellular organisms → Bacteria888Open in IMG/M
Ga0137331_1008822All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium887Open in IMG/M
Ga0137331_1008859Not Available886Open in IMG/M
Ga0137331_1009155Not Available876Open in IMG/M
Ga0137331_1010802All Organisms → cellular organisms → Bacteria833Open in IMG/M
Ga0137331_1011012All Organisms → cellular organisms → Bacteria828Open in IMG/M
Ga0137331_1012410Not Available797Open in IMG/M
Ga0137331_1012804All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria789Open in IMG/M
Ga0137331_1013252All Organisms → cellular organisms → Bacteria → Proteobacteria780Open in IMG/M
Ga0137331_1013265All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → unclassified Betaproteobacteria → Betaproteobacteria bacterium SG8_40780Open in IMG/M
Ga0137331_1014172All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → Anaerolineae → Anaerolineales → Anaerolineaceae → unclassified Anaerolineaceae → Anaerolineaceae bacterium764Open in IMG/M
Ga0137331_1015146All Organisms → cellular organisms → Archaea → TACK group → Candidatus Bathyarchaeota → unclassified Candidatus Bathyarchaeota → Candidatus Bathyarchaeota archaeon748Open in IMG/M
Ga0137331_1017349All Organisms → cellular organisms → Bacteria → Proteobacteria → Zetaproteobacteria → unclassified Zetaproteobacteria → Zetaproteobacteria bacterium715Open in IMG/M
Ga0137331_1017783All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Ignavibacteriae → Ignavibacteria → unclassified Ignavibacteria → Ignavibacteria bacterium709Open in IMG/M
Ga0137331_1020926Not Available673Open in IMG/M
Ga0137331_1021779Not Available663Open in IMG/M
Ga0137331_1026978All Organisms → cellular organisms → Bacteria611Open in IMG/M
Ga0137331_1027782Not Available604Open in IMG/M
Ga0137331_1028573All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium598Open in IMG/M
Ga0137331_1028699All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium597Open in IMG/M
Ga0137331_1030327All Organisms → cellular organisms → Bacteria583Open in IMG/M
Ga0137331_1030731Not Available580Open in IMG/M
Ga0137331_1034284All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium555Open in IMG/M
Ga0137331_1035496Not Available547Open in IMG/M
Ga0137331_1036202Not Available542Open in IMG/M
Ga0137331_1037609All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium534Open in IMG/M
Ga0137331_1039614Not Available523Open in IMG/M
Ga0137331_1041372All Organisms → cellular organisms → Bacteria513Open in IMG/M
Ga0137331_1041651All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → unclassified Bradyrhizobium → Bradyrhizobium sp. Rc2d512Open in IMG/M
Ga0137331_1042025All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales → unclassified Bacteroidales → Bacteroidales bacterium510Open in IMG/M
Ga0137331_1042908Not Available506Open in IMG/M
Ga0137331_1044225All Organisms → cellular organisms → Bacteria500Open in IMG/M

Sequences

Scaffold IDProtein IDFamilySequence
Ga0137331_1000007Ga0137331_100000710F069002MNYAELSQAISEWSNKDSIDKVLPTIIRFGQRDLEDNLRIRPMEYHPTTAIIAAGESTLALPSDFLELIYLVLIKDNVRYPVDGRETARVLYTERPSVTETGTPCVVARVADDLVFDVLTDVAYTRDWCYYRRLPVLVSSPSGTPAGNSNWWSENAEEAFLMSCLNKLSLYVSGIPEGDKKKWADGNLLAREALKFKEARETTGGSVLRSSNWK*
Ga0137331_1000151Ga0137331_10001514F066277MDRKKFVAMFSTSILGVALLKANPMNLFVSKKSLKTENSVNVKINPNAVNREKSGKKNG*
Ga0137331_1001507Ga0137331_10015072F069627MDADAVPIYMKISEKVVHLRRLGMPYTSIAERIGVNLWMAKRAARWAKTHNK*
Ga0137331_1005417Ga0137331_10054172F087945MGGVPAEIIGDPTAEQPCDGWNPSDHPEFREFLDHVAEILAHEYVQRMRETADPKDIEAWEKGGR*
Ga0137331_1006317Ga0137331_10063172F058543METVTILASINEKKKAEFFQTMESLTGLVESKCNDLDIRVKDDNRLIIKITFDGKDQMEKNFYTGEFNILKGTVKSLCENVIIKLNESLLNNN*
Ga0137331_1008686Ga0137331_10086861F076224RIVPEGISEAEKLVVVNAIVKLKNTSGDQYIFVTPDSIFEDNYRFDPVLIHKELKWTEEQIKFKEENVKEFTLNIKYDSTFKYYADSKNGHPFTIVIDSNICRVDVPDFTIPEIPIPEIAAIDPLIEQATNNIHFYAYKIPKIEKSESEIKIEYYNDDSVYSYVVNYNILDIDSIDQANSGTDLYNLDRLKKARPLDDTMLIKYQFDRDYYNRYYSDDEFKKQMEELQKELQQLSKDVKNQKIRVHSEVTKSRRK*
Ga0137331_1008791Ga0137331_10087912F043160MAKKNLDNLKNSHLGGGLSNLIPEMNEDHESKKTKAAYKDVPKTFLMVLEDYEYLQTYSRYMAFHSNSKYPLKRSLSDAIKLLRESHPEIQ*
Ga0137331_1008822Ga0137331_10088221F034985LTPGAAAAAEVWSRGFLPLRARSEGSYRLRPAFPGTAVILGDDTYEALSETELPEDGLVVYRLRAWPEGEVIRDRVVYGPAFVRAAQADRQRARVRDKARRWRFLLYPVVGLLPEEEQERQCDRLGLYAVTATLVSGLVESLGV
Ga0137331_1008859Ga0137331_10088592F070913FLFGIQLAAGESSVAFEYKGLPGQMTIEQARDYGEHSLACETDTIVSALVHCHDHSTDYLGKPAILKLEFIDGNLAMLVLLVPAEHFGEVSRHILRRYGKPRRHGTETDGPKPYEHMEWTLADGELVLDEWIARFNPVDQRFATVLGLRFLPAALEKRRAEVAWIRHRASEERNQADM*
Ga0137331_1009155Ga0137331_10091551F074797MNESEPSMRCRETILSVKTTGSLRLGEECSGYLFTGYMADVIKEA*
Ga0137331_1010802Ga0137331_10108022F009467MKLVHESVIERGEIFEALGAGFFETFEEEDLCARVYLFQEMAQLSHGVTAGWDTKDIVHEALDELLSEILTGEVALREFS*
Ga0137331_1011012Ga0137331_10110121F026597MFERHRLIVSVSLALLIITVVGVTVSSFSPSKKSEYFRELKDIYNTVNLYDKEIMSCESAKNTLVDLNYWNDFIPRYDAVSEEDHDVLLVQNQVRELAVKHQVRSLPEIRKYYGEYLSDRLSGLDYKVTILNDERNKIVVFTHDSFTKRSSLEKFHNTVANDLRILGFKQIRYKWYELEKLADEKYIHYNFSDLADNEVRHFSISAIKN*
Ga0137331_1012410Ga0137331_10124101F044511TKRAPDAGDSGAIPSIFLRLSIFPVGRRPAARPSAGNANR*
Ga0137331_1012804Ga0137331_10128041F021563MEDLKLLLIDRLKSKGMDSALIPAFLKALTSLISSEPDIDPAVANQKMHSLGWDEVAIDYHCLQIAISCHEADTK*
Ga0137331_1013252Ga0137331_10132522F098853MELTFARYLEDEGLREELERRAHRERAEQMHLYFAQAAQILHMPRVPEPRTDACA*
Ga0137331_1013265Ga0137331_10132652F089704MTDMDVPARNNYQIKIVYQHPSPTVSSGKVVLATDIVTTRTAVVDIAARLQKIFPKPEHLVFVHLLERSGQPRQVAWETLDEPGNGPV*
Ga0137331_1014172Ga0137331_10141722F048673MRTLALLLILVAIAASQPNHWLSVVMASIAHLLGR*
Ga0137331_1015146Ga0137331_10151462F059923MRRNKSEVDYNCDIDEFIRLAQRWSNLHQRLLNTLIRLPEEVYQFTLQKISFHAGQSQTIQIKEIKKPYMIILKRTDSESLIAHEIAHAYLSYTKNQWEEQEEQADELRKKWGFKKKQLCATYPKGCNNCFNPHCPESKAMKLKL*
Ga0137331_1017349Ga0137331_10173491F047155MSEETTQKGLAPKKHLSKNASIGVMVAGGLMILIPWFFFPAEQGSTLQITKTIGGVAGFAILCAGAYFRP
Ga0137331_1017783Ga0137331_10177831F027192MNRTIFILALLLVVGLSRASAQSEAEALVTASVESELVLVNVDGDWGLFSPGQTYTVTPSGFKEPPGPGEGAGIVVDAIGFEIDGNPGSDVLVSLILPAAFNSDDENGNLPLGNWTYGWNYDNDPGVAFSDAGPVTGSAVVVTIGGGAASGLFLGATVTVPTTAFAG
Ga0137331_1020926Ga0137331_10209261F105011MVLDLEIADIVDAHGVELADVVAAYERKMDAMRVKLKKIRKYAISQEAWYHYAVGSIVTLVAILIAFVVGFKFFR*
Ga0137331_1021779Ga0137331_10217791F041284MSLLPTLAVVTLAWFVVRAISVRVVWRESGVRRLDDETA*
Ga0137331_1026978Ga0137331_10269781F031175EGKLFHHLFCRRSVSHPNQLQVLLTRLNSGQGSLAPCRLDRQIDATMSPSDAAIRPHPRLWLPARGCPALPARAPNRASQVPSGSFRARCLLSPRGVRSVRLIEASRPIRASSYPADWPLPISCNEAEPSSRDATARALTFPSFNGQDRSHPLKGRLHDSRPFVMVNTFQFTRTTKLAWRFPNYTKTKEERMSSRRSWGGDPI
Ga0137331_1027782Ga0137331_10277821F004605MSLNSRALLLVLCLLGATEVVGQEAVTALDRTLSKTHMRQDTTYVAIADAPVQAFAPTTIQCGKQSCTVRVEVSSQFFNVTSGNAVRLHVKADGAPFPVTGFEIDGGINRPVAHLTTVSSLKTDLSPGPHTISVDFDMRS
Ga0137331_1028573Ga0137331_10285731F016290VSRGKRAPGDPKKPCCMVSEILEEAGIDRERARQIRHQVLEGIILMCQWQLQRMEQDRKAPAPGRRGRKVEVE*
Ga0137331_1028699Ga0137331_10286991F029138MVRTPLLLALLPAAIQAAPVRHFDVTAAFAPAKKAGGSAAVVVTFRPLDPDVRVNETPAPRLRLDLTQVVLVDKQAPASSQVPDYGPLTAKYLDITRPVSFPVGIAPTAPKGAHEVKASVVYFYCSTREAWCRRGTADVLIPAINVP*
Ga0137331_1030327Ga0137331_10303271F024820GPAMESTPIDTSPPKRPILVRPASIRYMGFECTSAGRAYRLRVDGVGEPRLFTVTILTAAFDTRKARFQDAPELCFARLQRELATNAELADGLQFVITPAEIDEYRDAQLRRSPDRKTRTLRTWP*
Ga0137331_1030731Ga0137331_10307312F045136MRKDAVYRMRVPKRTLAAIKKVAASRGEDASEWGRAIIETELRRDLASLQLRDQLLGAKPGKLAETDAMDLVLEAQRATRTR*
Ga0137331_1034284Ga0137331_10342841F082880MNAKKLERAIALGKRVEHFFVALVGADGFPYVNSARQIEQVAENQFAIEEWICPLTVKHLSENPKMAVLIWDPASDDGYEILGEVLMFESQAFLNGFAPEVEEDAHLPQVKRKLIIRAEKITAFSHALRCDDIQQLAEAKGTAKLFTGEDSGSEVPVCGFAPEWAKHARFGRSDEPCDDG
Ga0137331_1035496Ga0137331_10354961F056248FISYVAAPEFAPGSEPPTDFPVITYDGDREKPDAKLYRVMPWSDWQSYAERNPGASLLLPEPSRAVQVGNEDQASFVVTEGGDSRQTVELTWRSGSEERRARYIAQARSLEPRSLHTINTRTFLLAALAGFGAGMLIGRFMRRRWLPRPGDIVSLPPTIK*
Ga0137331_1036202Ga0137331_10362021F098452MKLTKTDILEYIVAFIGIVGVLAYLHATAEPNQTVAAAQAAPMMFEAGWTIRADTAHSAVRFPEMLLADARG*
Ga0137331_1037609Ga0137331_10376091F099499MSLITILMFLAIAASVCLVVHLLKRDKVPLWVAVALLCLIELLRTLPLGRY*
Ga0137331_1039614Ga0137331_10396142F031935MMSDSTKRIQAQESRGFPPVGSAHRSLMSAPGWFETILHFKGFGGGVPPNTETAAVNPRAGIE*
Ga0137331_1041372Ga0137331_10413721F084884VHPTLGSLARFQAFFYASAFSQSDGVPPPDPARVTQTVGWQVKE
Ga0137331_1041651Ga0137331_10416511F011513AAHSASVSSIDAARVQDLRIMGAHGFRSLPIKQL*
Ga0137331_1042025Ga0137331_10420252F066903MKRRFRQKEDLEPKNDPKKDKGLSDDIALENVNIDDVIGEIETHLETPEDTPEEE*
Ga0137331_1042908Ga0137331_10429081F100587LEVKLRQVFALAREGLKTEAQALAAAFGQPVPGFDFTKDGMKAFVNAPRFQFYGGELQALLGNDAAAREHWRRAAAGRDFRQTAFAYRAAQRLGEASEAEWRPRLETALAEADLYLFRGGHYPAGATCARGMLLRALGRIPEGDEALRQVFILPDKGMPHHIARLALQ
Ga0137331_1044225Ga0137331_10442251F028858MRVLFFVEGFTDIRFLVGLSEVCDLTVAVPSVAYRSSGLQERVAASGARLRVEEIAGGRAAYQVRSLGYLWKHAAQFDVILAQEMLRGALNATIVGALKGVPVVTYMGISPIE
Ga0137331_1044230Ga0137331_10442301F037999LENVLSPEAAPDLFVFDKFNKMPMAKRVKLMTKNPAELIDHMRKESHVVWKAVEAFIRRENDEGRDVLIEGVAVLPELISQLEDIPHRVVFIGNQGENHKENIKKFAEENEHDWMRDVSDQYIGAFAMFVKRMSAYIEQEAKKYGFEYIEMDKELFGNVAEEVMKS

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