Sample 3300011370

Basic Information
IMG/M Taxon OID	3300011370 Open in IMG/M
GOLD Reference (Study \| Sequencing Project \| Analysis Project)	Gs0116274 \| Gp0153827 \| Ga0134119
Sample Name	Fecal eukaryotic communites from dung pellets of Tule Elk in California, USA - Elk Dung E36 Metatranscriptome (Eukaryote Community Metatranscriptome)
Sequencing Status	Permanent Draft
Sequencing Center	DOE Joint Genome Institute (JGI)
Published?	N
Use Policy	Open

Basic Information

IMG/M Taxon OID

GOLD Reference
(Study | Sequencing Project | Analysis Project)

Sample Name

Fecal eukaryotic communites from dung pellets of Tule Elk in California, USA - Elk Dung E36 Metatranscriptome (Eukaryote Community Metatranscriptome)

Sequencing Status

Permanent Draft

Sequencing Center

DOE Joint Genome Institute (JGI)

Published?

Use Policy

Open

Dataset Contents
Total Genome Size	121357346
Sequencing Scaffolds	22
Novel Protein Genes	27
Associated Families	24

Dataset Contents

Total Genome Size

121357346

Sequencing Scaffolds

Novel Protein Genes

Associated Families

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
Not Available	16
All Organisms → cellular organisms → Eukaryota → Opisthokonta → Choanoflagellata → Craspedida → Salpingoecidae → Salpingoeca → Salpingoeca rosetta	1
All Organisms → cellular organisms → Eukaryota → Amoebozoa → Discosea → Flabellinia → Vannellidae → Vannella → Vannella robusta	2
All Organisms → cellular organisms → Eukaryota → Amoebozoa → Discosea → Longamoebia → Centramoebida → Acanthamoebidae → Acanthamoeba → Acanthamoeba castellanii → Acanthamoeba castellanii str. Neff	2
All Organisms → cellular organisms → Eukaryota → Haptista → Haptophyta → Prymnesiophyceae → Coccolithales → Coccolithaceae → Coccolithus → Coccolithus braarudii	1

Dataset Phylogeny

Taxonomy Groups

Number of Scaffolds

Not Available

All Organisms → cellular organisms → Eukaryota → Opisthokonta → Choanoflagellata → Craspedida → Salpingoecidae → Salpingoeca → Salpingoeca rosetta

All Organisms → cellular organisms → Eukaryota → Amoebozoa → Discosea → Flabellinia → Vannellidae → Vannella → Vannella robusta

All Organisms → cellular organisms → Eukaryota → Amoebozoa → Discosea → Longamoebia → Centramoebida → Acanthamoebidae → Acanthamoeba → Acanthamoeba castellanii → Acanthamoeba castellanii str. Neff

All Organisms → cellular organisms → Eukaryota → Haptista → Haptophyta → Prymnesiophyceae → Coccolithales → Coccolithaceae → Coccolithus → Coccolithus braarudii

Ecosystem Assignment (GOLD)
Name	Fecal Eukaryotic Communites From Dung Pellets Of Tule Elk In California, Usa
Type	Host-Associated
Taxonomy	Host-Associated → Mammals → Digestive System → Large Intestine → Fecal → Elk Feces → Fecal Eukaryotic Communites From Dung Pellets Of Tule Elk In California, Usa

Ecosystem Assignment (GOLD)

Name

Fecal Eukaryotic Communites From Dung Pellets Of Tule Elk In California, Usa

Type

Host-Associated

Taxonomy

Host-Associated → Mammals → Digestive System → Large Intestine → Fecal → Elk Feces → Fecal Eukaryotic Communites From Dung Pellets Of Tule Elk In California, Usa

Alternative Ecosystem Assignments
Environment Ontology (ENVO)	Unclassified
Earth Microbiome Project Ontology (EMPO)	Host-associated → Animal → Animal distal gut

Alternative Ecosystem Assignments

Environment Ontology (ENVO)

Unclassified

Earth Microbiome Project Ontology (EMPO)

Host-associated → Animal → Animal distal gut

Location Information
Location	USA: Point Reyes National Seashore, California
Coordinates	Lat. (^o)	38.04	Long. (^o)	-122.5	Alt. (m)	N/A	Depth (m)	N/A
Location on Map

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Location Information

Location

USA: Point Reyes National Seashore, California

Coordinates

Lat. (^o)

38.04

Long. (^o)

-122.5

Alt. (m)

N/A

Depth (m)

N/A

Location on Map

Zoom:

Family	Category	Number of Sequences	3D Structure?
F000187	Metagenome / Metatranscriptome	1693	Y
F000736	Metagenome / Metatranscriptome	914	Y
F001598	Metagenome / Metatranscriptome	665	Y
F004916	Metagenome / Metatranscriptome	418	Y
F005470	Metagenome / Metatranscriptome	399	Y
F007015	Metagenome / Metatranscriptome	359	N
F007793	Metagenome / Metatranscriptome	344	Y
F008027	Metagenome / Metatranscriptome	340	Y
F011371	Metagenome / Metatranscriptome	291	Y
F011642	Metagenome / Metatranscriptome	288	Y
F042676	Metagenome / Metatranscriptome	157	N
F043177	Metagenome / Metatranscriptome	156	Y
F048692	Metagenome / Metatranscriptome	147	Y
F049342	Metagenome / Metatranscriptome	146	Y
F050931	Metagenome / Metatranscriptome	144	Y
F056259	Metagenome / Metatranscriptome	137	N
F056539	Metagenome / Metatranscriptome	137	Y
F063397	Metagenome / Metatranscriptome	129	Y
F071833	Metagenome / Metatranscriptome	121	Y
F078057	Metagenome / Metatranscriptome	116	Y
F089632	Metagenome / Metatranscriptome	108	Y
F096377	Metagenome / Metatranscriptome	104	Y
F098404	Metagenome / Metatranscriptome	103	N
F104187	Metagenome / Metatranscriptome	100	Y

Family

Scaffold	Taxonomy	Length	IMG/M Link
Ga0134119_1003957	Not Available	692	Open in IMG/M
Ga0134119_1041087	Not Available	506	Open in IMG/M
Ga0134119_1074769	Not Available	610	Open in IMG/M
Ga0134119_1095115	All Organisms → cellular organisms → Eukaryota → Opisthokonta → Choanoflagellata → Craspedida → Salpingoecidae → Salpingoeca → Salpingoeca rosetta	719	Open in IMG/M
Ga0134119_1096571	Not Available	561	Open in IMG/M
Ga0134119_1110640	All Organisms → cellular organisms → Eukaryota → Amoebozoa → Discosea → Flabellinia → Vannellidae → Vannella → Vannella robusta	768	Open in IMG/M
Ga0134119_1111958	Not Available	579	Open in IMG/M
Ga0134119_1116795	Not Available	553	Open in IMG/M
Ga0134119_1118725	All Organisms → cellular organisms → Eukaryota → Amoebozoa → Discosea → Longamoebia → Centramoebida → Acanthamoebidae → Acanthamoeba → Acanthamoeba castellanii → Acanthamoeba castellanii str. Neff	694	Open in IMG/M
Ga0134119_1124110	Not Available	512	Open in IMG/M
Ga0134119_1126926	Not Available	765	Open in IMG/M
Ga0134119_1143270	All Organisms → cellular organisms → Eukaryota → Haptista → Haptophyta → Prymnesiophyceae → Coccolithales → Coccolithaceae → Coccolithus → Coccolithus braarudii	1113	Open in IMG/M
Ga0134119_1153336	All Organisms → cellular organisms → Eukaryota → Amoebozoa → Discosea → Longamoebia → Centramoebida → Acanthamoebidae → Acanthamoeba → Acanthamoeba castellanii → Acanthamoeba castellanii str. Neff	676	Open in IMG/M
Ga0134119_1162224	Not Available	720	Open in IMG/M
Ga0134119_1175155	Not Available	1291	Open in IMG/M
Ga0134119_1175879	Not Available	503	Open in IMG/M
Ga0134119_1179099	Not Available	523	Open in IMG/M
Ga0134119_1184779	Not Available	792	Open in IMG/M
Ga0134119_1189531	Not Available	698	Open in IMG/M
Ga0134119_1195816	All Organisms → cellular organisms → Eukaryota → Amoebozoa → Discosea → Flabellinia → Vannellidae → Vannella → Vannella robusta	672	Open in IMG/M
Ga0134119_1196110	Not Available	532	Open in IMG/M
Ga0134119_1204852	Not Available	587	Open in IMG/M

Sequences

Scaffold ID	Protein ID	Family	Sequence
Ga0134119_1003957	Ga0134119_10039572	F048692	MRSTTTVTSTTRGGGYHKEDYSAVPELKDDGRKHRLAQEEEDTNPWISPEHRLEKRDALFCDDDTIALAIKSGDIAQIKWLFERGYPINYNIQDTDGMCYESAELARHSGQNEIAEMFNELQKKGPPRQYVTVFYGDNSRDFVMPNSSDDDKLFRAEIKWFYKLDMKPPILLYQRGDTEKADQKWNKLREGRKYVAEKT*
Ga0134119_1041087	Ga0134119_10410871	F007793	MSETKDQQAAFEAFDQGQKGKLTKVECGMAIRALCKNPLETDLNAALAAVGDDISFAQYQGLYNKVWPKPDQQDGDLRKLMQMLDHDDNGRVQEGEFRQLLLSVGDVLSHQEVDLLFEEVPVDDQGFFRYDMLVDKLVGGHMPH*
Ga0134119_1056997	Ga0134119_10569972	F078057	MDEDEFSGLQIVTAAIVTTVTETDSLYCVAAPTFKLPSSKSPIMEAMVYCALHKWGIEILHNDKSTQRIVFKVTDFENYYKLSCSICSKQTPSEDVRSRMKALQRWFTSFPSRKDLQQPFTLSVKLRQFRKVREIIDKVTKFKAASARKQAVGGLL*
Ga0134119_1074769	Ga0134119_10747691	F000736	MSEGRRAGRGGASSTAAATEGVVGVSSALLQELVQAFTYIADPQGTGDLSTTKLTEDRLNRLIQSLGLKTSARDMMRDAGGKELDFVGFRDMMVARIKQSDSEENIRSNFQKFETSKGSGKILTRDLKLALKKMGRVPLRDNELEEFLRIPGLENDGYVHYEKFMLEFFGEKSKSAE*
Ga0134119_1095115	Ga0134119_10951151	F063397	DFCVCMAVASVVFLAFLAICISALPFRHGVGNDPADSWLAYAIAPGGGKKVTLVNATWVVPSYPTQREGGNAPGWWYGIEPVPASNLIQPILAYGYMGDIYSIFNGYFQWDNEYWWHSDTGTVVPGNTIKASVSYDARSDSYNMWIGCVETGWSVSSNIPVESGKLYTDTYFVVEHQPDDCGEYPSDGTISFQNIYIELEGKPFKPTWQAFRYQDMCSCAAHIVNPTRIDFSWKTS*
Ga0134119_1096571	Ga0134119_10965711	F001598	MASGGVGTKENGIELVGQRDKFLSIKWDTVEGASSYVVFKEVRDVWDMQGITEVAKDTLGALRPGNKYLIRVLALDSSGCRLKILGPATFITEGPEDKRQPKVKLDSLEKNWEEVLSAYPAPAAKADPYSGPNVCPYHWQCTLKDNLAHCTEYNHLPKPLACPNGAGCMLVSNNTHAQQF
Ga0134119_1110640	Ga0134119_11106401	F056259	MGGSNTKGLYLCETIYPPPDGRTCIPPEKLRKAIEKGEIPASAANQNANDDDADDDMDSRIDQGIRDVWAYYDKKNKGFLTKGEAETFFKDAFSILCLRKGVKAKDILPPGMSEGKAVSQSLAKLDKNGTGKIDYNAFEEFINMLDLDEAMSLFTGQQGPIAVNTDKVKMVDTSKFAAGATPNAASIQYRDYPDD*
Ga0134119_1111958	Ga0134119_11119581	F089632	LQCDISGLSLQITGNGTKLDFSRTMDHHTDQRVFNLPYPVSAETTTAQYFPQTAGGELQITLGKIQVQSSADFEITKFVVPGDPNSTVPRVAISINQSNKDYYEFLLGQATKFDTTFTVNVKDANLTFKSSCDVHEGAEIVTKETTQSVKLPTIPSRDQIEVVPAPNGGSSIRVYHKPRNASTSTQYHLPDA
Ga0134119_1116795	Ga0134119_11167951	F071833	MNFVNESTQDPQQKINFAQVLIKRKLIEPFEKLSRENVECYNLEKSSKEGNGQYIERVNKCLDSWQRHFERVEEKTNKYLVRLREKEAHHFSRLFHCTNAMNEPEVQACRREENERFANELKETFTQL*
Ga0134119_1118725	Ga0134119_11187251	F042676	HTHKTHHKMAQQEYSIGGMITFPQLTASYGLISGVIGAASLINPHLCYDLVGQPSRWVPMLESSSGLYTLRLFGLQTVALAAVSLHAAFNIKETSKRQQLSNVLAALNLGNGLIAAWMYKEGILNPLGVSIHSGLSMALGLGFLVYGLREDRRTGAGEPARD*
Ga0134119_1124110	Ga0134119_11241101	F011371	MSVPTKDQVEDCFKAMDSDQKMHLTKEQAKVACRAMGKNPTEKQIDEAMKGMSADIGLGDFMKIYNSAFPSPQSQDAEARSILKMLDPTGNGLMAESEIRQILATLGEPMQHSDIDMVMEGVQVNDKGFFRYDDFVTVMVTGNMDFNV*
Ga0134119_1124355	Ga0134119_11243551	F056539	IDKMKVLVSAVLLVALVSFVSCQLVLLNPKGRGFSEYDSRRAPCGISPLKVGPRVAWEQNSIQKLDVQIYGAGGGGYIVDRYSCVLNGGDANPMGPIFPIIGALEVAVPDHDFQIYKLYVRAPSYRCTGDATMQLIYSTHNGQEYFQCQDLIITYSGASLITSLSALTVVMIALLLL*
Ga0134119_1126926	Ga0134119_11269261	F096377	EDKREFVPTIDSKHSSNIFSTSLLNLIYRWKSFNVTHHAVGGKDRKYVKINNTNMGELLLYQSKFKNSSIYLIPTDDEQVNVFVTDNETIIKEILNKEEIVEEIVSKVFSKLEKTPTPFQQDLWLPVFSLKENNMELESAKTLLKDEYKINYATNSCTIGLNGSRVPGNLKVRPGENSKIIEKPFLFGIVHAQVDIPLFAAVVQPEDFLKNDI*
Ga0134119_1143270	Ga0134119_11432701	F004916	MKTSYVLFGLFALLCVASMSVVSAMDMELESEAAPCHPQCRWQCDDPSCPAQCHPVCERPKCQVHCEETPCAACKIHCDKPQCNVRCPKDLCESNDCPKCETVCAPAKCRTACTAPNAVCTPMCEETKCDWKCKKPTLCPRPKCELVCEKPACAYQKPAKLNITSSPCCQCNAANVKASLIQAGEAEGEALSFLEAMSHMKHVAQETGEAQCCPCAQ*
Ga0134119_1144082	Ga0134119_11440822	F048692	VKKQSPSSSIEELPDDGKPHRFMMNQDDEEPFISPEKRLEKRDQLFCDDDAVALAIKSGDLQQVKWFFEKGYPMNWLVKDTDGMCYEAAEMAKHHGHQEIVDLFKEAEGKGPPRQSITLFYENESRDFIMPNSSDDEKLFKAEIKWYWKLDPRKPILLYARGDVDKKDEKWHKLREGRKYVVEKL*
Ga0134119_1153336	Ga0134119_11533361	F098404	LDFTHTAMRSFLVCVVLALAIACAAAQQTRPKLSETFESKGFVQIKHNGTLFFGEGWYHVSQPDGKAFEAYAFGGAEHLNVYELQRFDKGKAFEVIHVAKDKTPVCHTKSLTGKMPQLWDWVEKADYVRNFTANGSKFDLWGYKTAGITLEVAVPVGYPNILAYFGRFSAGNEFSYYIEQWKTDKPHSTWFEIPKECHLGPK*
Ga0134119_1162224	Ga0134119_11622241	F005470	KYIQMSSIKLRKEGQLITEFPADMVPRSRLLTKLVEEFSSTEVDLEPAPGKDFSPATINKVKEFLQKFDKGLSKMPKKPLLIFVTYNDWLDNNFDEKLREWLEEFLKPKSFYDLVELFNAAFYLQIDDLREICAARIAHSIILERKAPEDFLRDFGIVTQYQDFFTPEEEAKFIEKEFINRNDFEGVAAEEEDELNKE*
Ga0134119_1171256	Ga0134119_11712561	F043177	SPMTEAFDVSFKLYEEELDKFEIKGGIPEAKKDFYRLDWFARSWYMWPALDKADVMYEPLWALHTIFEDIYPWSLIWKSHDVIRTKMDNAIYTWEQKLVQQLEDAEPQSETDKKTLVEKTKTMVLLDYRADASKATMLYYHDILKTIIMPPFEKLVIPACKTIIEPISELIPEPLKQFLDPNKMFEELINGIVDDSIETVLNSDEMTTRD*
Ga0134119_1175155	Ga0134119_11751551	F049342	MCHLTYSALISQFENFDHKVTFWSKLEAFWKKDAANKDYLMDVLMNPPADYLQSTGPLFAKLFNFYNNKETFADILPELKALSIDVTKNKFFSILNAIFDFLAYTYNSSFSKTDLEKYVETILDMLTNDILFDNFFQSYVTHLRIIRAKKKFALLFQRRLETDCFWIWSFSFLASMKNHYLGILLSFEETFLEGGLILKWKNTESWVNNFSAFCHEKGIGTSKNLNKASELYQKDIIQMPRVLYSRYRKVLVVKEKRARGLQLTQEEEAMNIDEQIEDLKQKIEERLEDTTRMDCYLFYVYGKIYEKIDDDNDRGIEWYQ
Ga0134119_1175879	Ga0134119_11758791	F071833	KQASLQMNLLNEFTQDPQQNINLFHVLIKKKLIEPFEKLSQESVECYNLQRGGKEGPEQYSGRVNKCLDSWQKHFESVEDHTNKYLANLRAKEALHFSKLFHCSNAINEPEVQACRKEENERFANELKESFSKL*
Ga0134119_1179099	Ga0134119_11790991	F050931	LLKLDISKFLCANFNLGSASMVLFEPAKPKQAKEAYDEIEMCVVKPVPDGFTCWDSVTFDVGDCTIAQLLEEFPKIHYGCKFEVLFFDAPAKAGETQVTKPVWTNFPVTESQKAQNPKSLSSTLTQLYADFFPNAPLGEKKTYIGLNGSIVNADGDVVLVPRIIAYFKPKK*
Ga0134119_1184447	Ga0134119_11844471	F000187	MSEERRNRNKIIQGDVTGIPQKTLQDFASVFMYMCHPDGKGGDDLAVEKLSEGQLDKILRAINISVDDKKVSAKDMLREVGGKDLDFATYRDMMVARLKAQQPEAVVRTQFEKFDERKTGKIPLKEMEHALRKGSRRPLTEAQMEKLLSIKDITDQGNFVYGKFMTEFYGEKKGSTLEEGV*
Ga0134119_1184779	Ga0134119_11847791	F104187	QPMSDSNKPLSRVTHLYYGDRWVWLKTTLKGVTSQSVLRSDDENFPIERVEKWLTDDKRIISVSYGLEDKTYVIISHRYDFDQPRVGGQKLFVSNSFPEQKIRDAWKTNSRVNILAYCKNSWVLVTEENPTEVIGQSLSTWTDIEDVKAEVGKLWKADKQVQTLVHGQIDGEWKWVLLAQKTDGKQAGQAFYVNSDWPMDKISDYYKDKKYITTLAWNQPEEYWVLICGPVAGGQSLSTTGDFPSEKVQAMENLYFYGKRD*
Ga0134119_1189531	Ga0134119_11895311	F011642	MGGEQSTIGLKMMEVIYPAKGRQSIFAANPKAAAALEKEVKKRGLTLDDLEPQEEAIDGDLDSDIERCLAKVWSFYDRKNVGSLPRKSVEQFFKDCLTIFAIRQGRKLKDVVGKVDMKKAMAAAVQKVNPSNSGTVTRQEFEQFVFTYDIDEALESFFGGQGIDVEADVPMVDINQFSTQNREGPKLVYRDYPDD*
Ga0134119_1195816	Ga0134119_11958161	F056259	TKQPKEAYNKMGGNNTKGLYLCETIYPPPDGRTCIPPEKLRKAIEKGLIPASAANQFTGDDDADDDMDSRIDQGIRDVWAYYDKKNKGFLTKGEAETFFKDAFSILCLRKGVKAKDILPPGMSEGKAISQSLAKMDKNGTGKIDYNSFEEFINMLDLDEAMSLFTGQSGPISVNTDKVKMVDTSQFAAGAKANAANIQYRDYPDD*
Ga0134119_1196110	Ga0134119_11961101	F007015	KDLSMSRRGVARTESTTNISASEAEDFKLAFKIYCGDDDELTAPVLQSIMEARGVKGNAEKMLQEAGGKTIDSLTFQAMMSRKLGQGETKENVIKAFATFDWKRTGKINRNDLEHALTSMGEPLTRVELQAAIEASGGADEFFHWNKFIDALFPPTTQ*
Ga0134119_1204852	Ga0134119_12048521	F008027	MGKHHVKILVANYGGKDVTSIAKQQHKMNTSFQATNQAFGDPLPNVPKFLHVIYSYHGVLGSVAIPEGQQFRPHPPAHHVLGALYGGADVTHKVQSLGHSFQVSNAHFGDPNPGVYKTFSVAYVKNGELKTIVAKENEHVNLH*

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

3300011370: Fecal eukaryotic communites from dung pellets of Tule Elk in California, USA - Elk Dung E36 Metatranscriptome (Eukaryote Community Metatranscriptome)

Overview

Ecosystem and Geography

Associated Families

Associated Scaffolds

Sequences