Sample 3300011323

Basic Information
IMG/M Taxon OID	3300011323 Open in IMG/M
GOLD Reference (Study \| Sequencing Project \| Analysis Project)	Gs0046783 \| Gp0111637 \| Ga0138355
Sample Name	Anoxygenic and chlorotrophic microbial mat microbial communities from Yellowstone National Park, USA - YNP NP_1300 MetaT (Metagenome Metatranscriptome) (version 2)
Sequencing Status	Permanent Draft
Sequencing Center	DOE Joint Genome Institute (JGI)
Published?	N
Use Policy	Open

Basic Information

IMG/M Taxon OID

GOLD Reference
(Study | Sequencing Project | Analysis Project)

Sample Name

Anoxygenic and chlorotrophic microbial mat microbial communities from Yellowstone National Park, USA - YNP NP_1300 MetaT (Metagenome Metatranscriptome) (version 2)

Sequencing Status

Permanent Draft

Sequencing Center

DOE Joint Genome Institute (JGI)

Published?

Use Policy

Open

Dataset Contents
Total Genome Size	134757517
Sequencing Scaffolds	26
Novel Protein Genes	32
Associated Families	24

Dataset Contents

Total Genome Size

134757517

Sequencing Scaffolds

Novel Protein Genes

Associated Families

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
Not Available	22
All Organisms → cellular organisms → Bacteria	2
All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → Azospirillaceae → Azospirillum → Azospirillum picis	1
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → Chloroflexia → Herpetosiphonales → Herpetosiphonaceae → Herpetosiphon → Herpetosiphon geysericola	1

Dataset Phylogeny

Taxonomy Groups

Number of Scaffolds

Not Available

All Organisms → cellular organisms → Bacteria

All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → Azospirillaceae → Azospirillum → Azospirillum picis

All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → Chloroflexia → Herpetosiphonales → Herpetosiphonaceae → Herpetosiphon → Herpetosiphon geysericola

Ecosystem Assignment (GOLD)
Name	Anoxygenic And Chlorotrophic Microbial Mat Microbial Communities From Yellowstone National Park, Usa
Type	Environmental
Taxonomy	Environmental → Aquatic → Thermal Springs → Hot (42-90C) → Unclassified → Anoxygenic And Chlorotrophic Microbial Mat → Anoxygenic And Chlorotrophic Microbial Mat Microbial Communities From Yellowstone National Park, Usa

Ecosystem Assignment (GOLD)

Name

Anoxygenic And Chlorotrophic Microbial Mat Microbial Communities From Yellowstone National Park, Usa

Type

Environmental

Taxonomy

Environmental → Aquatic → Thermal Springs → Hot (42-90C) → Unclassified → Anoxygenic And Chlorotrophic Microbial Mat → Anoxygenic And Chlorotrophic Microbial Mat Microbial Communities From Yellowstone National Park, Usa

Alternative Ecosystem Assignments
Environment Ontology (ENVO)	aquatic biome → hot spring → microbial mat material
Earth Microbiome Project Ontology (EMPO)	Free-living → Non-saline → Water (non-saline)

Alternative Ecosystem Assignments

Environment Ontology (ENVO)

aquatic biome → hot spring → microbial mat material

Earth Microbiome Project Ontology (EMPO)

Free-living → Non-saline → Water (non-saline)

Location Information
Location	USA: Wyoming: Yellowstone National Park
Coordinates	Lat. (^o)	44.963	Long. (^o)	-110.715	Alt. (m)	N/A	Depth (m)	N/A
Location on Map

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Location Information

Location

USA: Wyoming: Yellowstone National Park

Coordinates

Lat. (^o)

44.963

Long. (^o)

-110.715

Alt. (m)

N/A

Depth (m)

N/A

Location on Map

Zoom:

Family	Category	Number of Sequences	3D Structure?
F002970	Metagenome / Metatranscriptome	517	N
F005028	Metagenome / Metatranscriptome	414	Y
F005631	Metagenome / Metatranscriptome	394	N
F006252	Metagenome / Metatranscriptome	377	Y
F007404	Metagenome / Metatranscriptome	351	Y
F008499	Metagenome / Metatranscriptome	332	Y
F009934	Metagenome / Metatranscriptome	311	Y
F010840	Metagenome / Metatranscriptome	298	Y
F012577	Metagenome / Metatranscriptome	279	Y
F014738	Metagenome / Metatranscriptome	260	Y
F015737	Metagenome / Metatranscriptome	252	N
F025895	Metagenome / Metatranscriptome	199	Y
F030445	Metagenome / Metatranscriptome	185	N
F031513	Metagenome / Metatranscriptome	182	N
F032293	Metagenome / Metatranscriptome	180	Y
F039435	Metagenome / Metatranscriptome	163	N
F044842	Metagenome / Metatranscriptome	153	Y
F070164	Metagenome / Metatranscriptome	123	N
F073601	Metagenome / Metatranscriptome	120	Y
F075804	Metagenome / Metatranscriptome	118	N
F081391	Metagenome / Metatranscriptome	114	N
F085751	Metagenome / Metatranscriptome	111	N
F092122	Metagenome / Metatranscriptome	107	Y
F098323	Metagenome / Metatranscriptome	104	Y

Family

Scaffold	Taxonomy	Length	IMG/M Link
Ga0138355_1003546	Not Available	871	Open in IMG/M
Ga0138355_1022079	Not Available	720	Open in IMG/M
Ga0138355_1032093	Not Available	1536	Open in IMG/M
Ga0138355_1036071	Not Available	651	Open in IMG/M
Ga0138355_1036921	Not Available	1413	Open in IMG/M
Ga0138355_1039655	Not Available	2836	Open in IMG/M
Ga0138355_1061917	All Organisms → cellular organisms → Bacteria	859	Open in IMG/M
Ga0138355_1076087	Not Available	546	Open in IMG/M
Ga0138355_1080824	Not Available	580	Open in IMG/M
Ga0138355_1087212	Not Available	533	Open in IMG/M
Ga0138355_1088545	Not Available	1047	Open in IMG/M
Ga0138355_1101200	Not Available	655	Open in IMG/M
Ga0138355_1107273	Not Available	529	Open in IMG/M
Ga0138355_1108357	Not Available	807	Open in IMG/M
Ga0138355_1108944	Not Available	1535	Open in IMG/M
Ga0138355_1114609	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → Azospirillaceae → Azospirillum → Azospirillum picis	1598	Open in IMG/M
Ga0138355_1131934	Not Available	689	Open in IMG/M
Ga0138355_1142497	Not Available	759	Open in IMG/M
Ga0138355_1142579	Not Available	815	Open in IMG/M
Ga0138355_1154255	Not Available	1000	Open in IMG/M
Ga0138355_1162815	Not Available	535	Open in IMG/M
Ga0138355_1163093	All Organisms → cellular organisms → Bacteria	2589	Open in IMG/M
Ga0138355_1164612	Not Available	1534	Open in IMG/M
Ga0138355_1175985	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → Chloroflexia → Herpetosiphonales → Herpetosiphonaceae → Herpetosiphon → Herpetosiphon geysericola	601	Open in IMG/M
Ga0138355_1178788	Not Available	3269	Open in IMG/M
Ga0138355_1192209	Not Available	1981	Open in IMG/M

Sequences

Scaffold ID	Protein ID	Family	Sequence
Ga0138355_1003546	Ga0138355_10035461	F070164	INRLLYEGAFIKTNDGSLVSGLDIADSSADNRIILRIAWMWLENDWSAEPPSLGPDWYLYNCADQNAPGGPANVSPKKWDLSGHCNVYGSGQHQIAGFQLGDRRHDIEAAYKFCYKREFPIGAGQVMQENLNYSSNATRDAWNYNNPVYAGKIPLGDLNREFTVGDFYPSCSSHECEARTQLLVKHPCMAMYLNTAADTWGGFNDSRANGNAQVIVSALHYYILDLKNGAS*
Ga0138355_1014843	Ga0138355_10148431	F098323	IFALFGFINTSIPVWTQENTTTQFDNAILAKNQQPVVPIGKADTSVVPACQNLINEIVKCPSGNGTCVAEKLRKDNKLTENTKRCLGLNSNNLNENQKLDLINKVCLVLPAISSSDRIFFCQACIGRGVKKPSNWTDQDIVDKCNSTIPANNSSKKLVNRKIDQNGQVKE
Ga0138355_1022079	Ga0138355_10220791	F098323	TTQFDNAILAKNQQLIVPIGRADTSVDPACKNLINEIVKCPSGNGTCAAEKLRKNNNLTENAKKCVGLNSNNLNENQKLDLINKVCLVLPAASSNDRTFFCQACIGRGVTKPSSWSDQEIVNKCNSTIPANNSSRKLVKLVPDNNGQLKEVLATRINVKEKPLGVARATEDNFYLTVANQLANPFSNKPDFVLASTQNQQKTLIIEASEISNVVAGGGIEKSQGETCTFSFSPGVGWRV
Ga0138355_1032093	Ga0138355_10320932	F039435	MLVAIARPHQYFPVPLTAADYEFTTSDDGDERGRVTLPPALARSSVMTQIGDELAVYCTQLSKTIWRGQIERIEEARDGSITWHALGFG
Ga0138355_1036071	Ga0138355_10360711	F010840	DGAPSGEREREVNRMNLPFDKPLNKVTNGALAAALVVVVAWALREFVGVDLPAEVQSALALIVGFGISYLVPLSAAEAEAIAQAYYRK*
Ga0138355_1036921	Ga0138355_10369212	F030445	MLVAIAKPHQQFPVSLSGAEYEFSTSIDGDERGRITLPPALARSGVMTQIGDELIVYCTQLSKTIWRGQIERIEEAQDGSITWYALGFGALQREARISVVQQMSDMTRWKPVGAG
Ga0138355_1039655	Ga0138355_10396553	F025895	MNELIAWIIAAAVILLLANTNVADGLFDALDLSDNLRRAAEWARGVRGVPAAVSAASFFALAYVFGALAYRYDLVPTWRFIQPVAQDVLTSGAEWLTLFALFLTLLPTLIELASVGLVQRSIKALEYMTYFFIFFDLVTDYTEAAALVEVWQRSGLFDPLPSLIAGAAIVLAKISWTFAASFAFEFLAILFAVTGLLLAANVRAPTAGGGTR*
Ga0138355_1061917	Ga0138355_10619172	F075804	MLKHISSSLSRSKKYRLWQEAYWLVLLNQALKTFTEQHLQLKNPEIRAFVRLQGQVLHVKIAAKEPTVLVALKIAQKALLDFLHQNLLQKAQLVTQLKISFLVK*
Ga0138355_1076087	Ga0138355_10760871	F092122	MFNKLLERLGISPKPEETRGSGNPDRVEVSAAIKTVAIETAKKAMEGLAESTLKAISRIREMVSSIGLTPLPEVMQKAYEGLRFVIGWLTTPFSNTVSGSATD*
Ga0138355_1080824	Ga0138355_10808241	F039435	MLIAITKPHQQFPIPLTSAEYELTTSEDGDERGRITLPPALARSAVMTQIGDELIVYCTQLSKTIWRGQIERIEEARDGNIT
Ga0138355_1087212	Ga0138355_10872122	F073601	SLALGRAMLQAKATCLVMALPSKRREGQRMFWRLHFAWRCAIKIMACGSIIRTLPVEKRALAGMGVLLQQG*
Ga0138355_1088545	Ga0138355_10885453	F005028	MRDDDLRAAMQFFAERLRGAQLDQTRLLRWTRHKLRNDAQSVAELMLTVGYRATYIRYFLRYHIRNVDPETDSEDVVLVVADLQSAAKRLRQPYRDLAAVCLRWGYVHETVVQMLEKALERKR*
Ga0138355_1101200	Ga0138355_11012001	F073601	GRAMLQAKATCLVMVLPAKRREGQRMFGLLHFAWRCAIKIMECGNIIRTLPVEKKALAGMGVLLQQG*
Ga0138355_1107273	Ga0138355_11072731	F070164	SLVSGLDIADSSADNRIILRIAWMWAENGLNLGPDWYFHNCNDRSDTGPAGISPRKFDLSDYCNVYGSGQHQIAGFQLGRDRRNEIEAAYKFCFKRGFPIDAGQVMQENLNYSSNATREAWNYNNPVYAGKIPLGDLNREFTVGDFYPSCSSHECEARTQLLVKHPCMAMYLNTAA
Ga0138355_1108357	Ga0138355_11083572	F009934	MRPTTPLAVENSVGKPAACKAPNAGMGKRAWRTPTP
Ga0138355_1108944	Ga0138355_11089443	F044842	MEEIEIWRGVRGEGFADVGRVGFIGEFLGVVDIARGDDWVERCVLYRTDDGRVAVHQMRLSVSGDGVDVAEAYMLPALGECSAEGES*
Ga0138355_1114609	Ga0138355_11146094	F073601	MLQAKATCLVMVLPAVVREGQRVFWLLHFAWRCAIEIMECGNIIRTLPVEKRALAGMGVLLQQE*
Ga0138355_1131934	Ga0138355_11319341	F085751	MSDAIAWIIAFGVIFALVNSNAADSILSALDLSDNLKRAVDWARGVRGVPAGVSAACFFILAYVFGALAYRYDLVPTWRFIQPVANDVLATGAEWLTLFALFLTLLPTLIELASVGLVQRDIRALQYMVYFF
Ga0138355_1142497	Ga0138355_11424971	F007404	MELIDIFQILAAGHQHLTLVDYLYNALAGAIGALTAYLADNEGEVFLPRYDREYHSVELGALGRVLTGAGAGVIVGYSGFVPFAAGIIAPAI
Ga0138355_1142579	Ga0138355_11425791	F031513	LWDELGGWRALSATYGDSGIVADGVTYPASLPVVRVGRDLVWIARCDSAALVEHQALERARESAALASLWRGGGQWLDFLRVAGVVLPAVFAYFTWAQVGALQALVAQILALVGEGR*
Ga0138355_1148153	Ga0138355_11481531	F015737	KLKDLFSYSYGQLLQQESLAFATQFWSNLVSATIPTEKTKLNPKTAFQQTLLNWQEKQFTTELIPEILKEGELTTDLEDFALFYGIKVLAILNQDILNTQLGSTEWQLPETTTTPGSLSTKPNILVLTSEIYAPLFINLNCDYLPISEDLPELLKAVTQIITNNPEIKLILINSDN
Ga0138355_1154255	Ga0138355_11542552	F002970	MSYSAVTDIIEMLAGLTAQYNSVVVPVRRLTSQPNWSDAAQLPVRIIPALGGLRLIEGGVYTPTRATRAVWEIDDLLLVRDVGMGRGVADTASALVNYIEDYVARLRSAWLARGDVQLLNVSGIIDVVRYGERAYEGATVTTRFAHLVRAPSA*
Ga0138355_1162815	Ga0138355_11628151	F081391	MKFRSKSEPRWKRKERDAVRALQAIFGRVSDPSLARLLTSTGRVGRQTRFGVDGFVGNN
Ga0138355_1163093	Ga0138355_11630934	F073601	QVGAGCPLLGVSLALGRAMLQAKATCLVMVLPAKGREGQRMFWRLHFAWRCAIKIMACGRIIRTLPVEKKAFVGMGVLLQQG*
Ga0138355_1164612	Ga0138355_11646121	F005028	MRDDDLRAAMQFFAGRLRGAQLDPTRLLRWTRHKLRNDAQSVAELMLTVGYRATYIRYFLRRHIRNVDPETDSEDVVLVVADLQSAAKKLRQPYRDLAAVCLRWGYVHETVVQMLEKALERKR*
Ga0138355_1164612	Ga0138355_11646123	F008499	MKSRSKREPRWKRKEREAVKALQAIFGRVSDPSLARLLTSTGRVGRQTRFGVDGFVGDDPGFVVEVKARKKMLTKPAVQALLQTIDRAAQFDRIPLFVVVFGDDVPTRTENGARVDREWVMMPRRVLEELVGKERANE*
Ga0138355_1175985	Ga0138355_11759851	F005631	VGRQRIRAVGAAFGWCETMKLNVAVDIDNALRKLLPQTARIEAALDAGAAAAHSVMQIYPPPPAGSRYRRTGNLRQKLRIEKLSRTSRIVENTASYARFVYGMPQARVHRGRWASVVDAAEAARVEAEKVLRGR*
Ga0138355_1178788	Ga0138355_11787881	F012577	LSKTIWRGQIERIEEARDGSITWHALGFGALQRDARISVVQNMSDMSRWRAVGAGFLSGSGYGSRSDLWEYAVISALGVSQVEIRTKKEFVIDDYTLFFIAYLYDHPERYTKLTSTERLFVSVSQSLGLADGVWIAPVAAIPQPNAYNLTLGTVTWINTAGSVTATNCYGWVIGVRASGNETVAGNTSVTFYATINPSLILGIEDGLLAINLSGRGGCCDIKLPTGTNVSIAKPDANLREIVEQSTDEYAQVRYRRKRFLRDRALPTIDFRADSPLVWRFPETTRAVDISKAPNRVYGQYRGYWTDHLTATTMILPLESRRQSLAWRVASVGEYGSKAIAETRRDEAAVAFDRQIAPITVELDNARYELMTRDGITVPNWAADVSDYAIVPGYFRNAKITSRTISRERTTYTVSFNPDDFVNALR*
Ga0138355_1178788	Ga0138355_11787884	F007404	VDITEIFRLLAAGHTGLSALDYVWNALFGAIGAATAYLADTEGEVLLPRYDAQSNSVELGALGRVLVGAGAGVLVGYSGYIPFIAGVVAPTLLPVLVDKIAGFVGRGSNET*
Ga0138355_1178788	Ga0138355_11787885	F014738	MKLDITLLTGAFFLAFVHPDAAQVAATAALLLLVTRVERGRKARKKKSAPASC*
Ga0138355_1192209	Ga0138355_11922092	F006252	MRSFEEQAAFGLPYERAIAQTAALLLYPNRPGLMLARLDAYAPLDYLLLDGKKPAAALEVKRRSVRSDAYRTTILPDSVYVAAKRLTIPAFAAILFTDGLCIFDVVRTPSTVRWLRDRRGRARKHREYVINGRMVKCEAVHQ*
Ga0138355_1201551	Ga0138355_12015511	F032293	MRVRKIGTLVFDSNTNIIVDADAQDAPGVGFHINRLDDPQPFSVEIAFKRTTRQQALDAVNALARELFSYAQRRQDNHLAIAGGAP

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

3300011323: Anoxygenic and chlorotrophic microbial mat microbial communities from Yellowstone National Park, USA - YNP NP_1300 MetaT (Metagenome Metatranscriptome) (version 2)

Overview

Ecosystem and Geography

Associated Families

Associated Scaffolds

Sequences