3300011290: Marine microbial communities from the Southern Atlantic ocean - KN S15 NADW_A metaT (Metagenome Metatranscriptome) (version 2)

Overview

Basic Information

• IMG/M Taxon OID: 3300011290
• GOLD Reference (Study | Sequencing Project | Analysis Project): Gs0114292 | Gp0125894 | Ga0138381
• Sample Name: Marine microbial communities from the Southern Atlantic ocean - KN S15 NADW_A metaT (Metagenome Metatranscriptome) (version 2)
• Sequencing Status: Permanent Draft
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Published?: N
• Use Policy: Open

Dataset Contents

• Total Genome Size: 38629010
• Sequencing Scaffolds: 18
• Novel Protein Genes: 21
• Associated Families: 19

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
All Organisms → cellular organisms → Bacteria → PVC group → Planctomycetes → unclassified Planctomycetota → Planctomycetota bacterium	1
Not Available	11
All Organisms → cellular organisms → Bacteria → environmental samples → uncultured marine bacterium MedDCM-OCT-S08-C235	1
All Organisms → cellular organisms → Bacteria → FCB group → Candidatus Marinimicrobia → Candidatus Marinimicrobia bacterium	1
All Organisms → cellular organisms → Bacteria → unclassified Bacteria → bacterium TMED161	1
All Organisms → cellular organisms → Bacteria → FCB group → Candidatus Marinimicrobia → Candidatus Marinimicrobia bacterium PRS2	1
All Organisms → Viruses → Predicted Viral	1
All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium MarineAlpha1_Bin1	1

Ecosystem and Geography

Ecosystem Assignment (GOLD)

• Name: Marine Microbial Communities From The Southern Atlantic Ocean Transect To Study Dissolved Organic Matter And Carbon Cycling
• Type: Environmental
• Taxonomy: Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Microbial Communities From The Southern Atlantic Ocean Transect To Study Dissolved Organic Matter And Carbon Cycling

Alternative Ecosystem Assignments

• Environment Ontology (ENVO): marine biome → marine water body → sea water
• Earth Microbiome Project Ontology (EMPO): Free-living → Saline → Water (saline)

Location Information

• Location: Southern Atlantic Ocean
• Coordinates
  • Lat. (^o): -28.2362
  • Long. (^o): -38.4949
  • Alt. (m): N/A
  • Depth (m): N/A

Associated Families

Family	Category	Number of Sequences	3D Structure?
F003507	Metagenome / Metatranscriptome	482	Y
F006551	Metagenome / Metatranscriptome	370	Y
F020371	Metagenome / Metatranscriptome	224	Y
F021393	Metagenome / Metatranscriptome	219	N
F025846	Metagenome / Metatranscriptome	200	Y
F027996	Metagenome / Metatranscriptome	193	Y
F036429	Metagenome / Metatranscriptome	170	N
F042932	Metagenome / Metatranscriptome	157	N
F052640	Metagenome / Metatranscriptome	142	N
F055787	Metagenome / Metatranscriptome	138	Y
F060038	Metagenome / Metatranscriptome	133	Y
F060053	Metagenome / Metatranscriptome	133	N
F062832	Metagenome / Metatranscriptome	130	N
F063612	Metatranscriptome	129	Y
F065861	Metagenome / Metatranscriptome	127	Y
F067833	Metagenome / Metatranscriptome	125	Y
F076161	Metagenome / Metatranscriptome	118	N
F092215	Metagenome / Metatranscriptome	107	N
F103410	Metagenome / Metatranscriptome	101	N

Associated Scaffolds

Scaffold	Taxonomy	Length
Ga0138381_105210	All Organisms → cellular organisms → Bacteria → PVC group → Planctomycetes → unclassified Planctomycetota → Planctomycetota bacterium	693
Ga0138381_106991	Not Available	501
Ga0138381_114909	All Organisms → cellular organisms → Bacteria → environmental samples → uncultured marine bacterium MedDCM-OCT-S08-C235	503
Ga0138381_120762	Not Available	612
Ga0138381_121328	All Organisms → cellular organisms → Bacteria → FCB group → Candidatus Marinimicrobia → Candidatus Marinimicrobia bacterium	504
Ga0138381_131341	Not Available	792
Ga0138381_135765	Not Available	516
Ga0138381_136622	Not Available	690
Ga0138381_142634	Not Available	1179
Ga0138381_154483	All Organisms → cellular organisms → Bacteria → unclassified Bacteria → bacterium TMED161	576
Ga0138381_156571	All Organisms → cellular organisms → Bacteria → FCB group → Candidatus Marinimicrobia → Candidatus Marinimicrobia bacterium PRS2	517
Ga0138381_161934	Not Available	970
Ga0138381_167787	Not Available	953
Ga0138381_168490	Not Available	742
Ga0138381_170240	Not Available	655
Ga0138381_171522	All Organisms → Viruses → Predicted Viral	1471
Ga0138381_175116	Not Available	876
Ga0138381_180023	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium MarineAlpha1_Bin1	869

Sequences

Scaffold ID	Protein ID	Family	Sequence
Ga0138381_103915	Ga0138381_1039151	F103410	LVVKKCRPKGLQSLIASLPGPSHKSPQTRRSAATCFLAQPIPTHSRASPFDALISMPAQHVLRRTPEGPSRTVLTDRIKIPKASRSPQRRTFLHHPEASLKHASFRLLYHKTAQKLFSNTADHFCQHLRRHARVPDPGPAHRHSDDPKITFLPISLVFDRLAQGPHDPGHTTPEGFACRFGCSTAPLLPGGIATTVSQPSQSTQRPLGHLTLCRTIRPEGHIEGPGSRNTIH
Ga0138381_105210	Ga0138381_1052101	F003507	TDFGVMYACGIKEVQVDGCQDHFVLPEVLCRFRGRIDEALMNEFVAIQSAVAIDEGLVSPKHLVVDTFPSEQRSQRVTDATTLYKAKKNSLKSQNRSQTD*
Ga0138381_106991	Ga0138381_1069911	F092215	SQTPNDIALAETFHHSEDISGIRQGAGLIQLTEAHYAPFVDDDYCPLAGPALLVPKVIRLADLALGMEVGQLGIGKATERCAPSTVGRNCVATYAQDLSIIILEPLVFLSERGRLRCSTRGEVEYVERKNNYLLALVVGQGNVPIGGGKFEIGGYIANFCRHIPAF
Ga0138381_114909	Ga0138381_1149091	F060038	MAYATSNPIKKVSQMGESNSLWYYTDGDAIGDIDNADYFILSEAELTAGDIIFVNSG
Ga0138381_120762	Ga0138381_1207621	F006551	LGASTTGSYDPWAANATIDRDSSSTFDSTVESASGTIGTNGVLTDDTLRAFLRKIRIAAGKDPNVWLGSHEVYSEIQGLYMPSVRIPNPYGEALVQVDVNGIQTFRGTGVGIHVDSIYGIPFIPSKDAPSDSGDATEIGRLFAFDTSDAEGYGYPRIGIQIAIPTEYYEATRRSPAYPFVNNAFVEKGVFRTMGETVCRHFKSQ
Ga0138381_121328	Ga0138381_1213282	F025846	MVSLTVVPMVVHMVIVSMAHGHVTVMLTVPMAQMKPTVFLLHVKTRVYGIVAMANVFQHHMYVMAQVNFVTQAGLQTVPMVQMKV*
Ga0138381_131341	Ga0138381_1313412	F042932	SYENTVAKSIDTLADVVQSIAQSQQGVEKAITEIHERVKALETPTDLPLKPKGTQGGDDVGAKVTAPNDPYPVGQQAKLDSDRTDRNPPKKDPAGLKMQEKPVNKAEEEFVERSEPEMVTKSQHEFSTETPRPNSALETLDKSFSKDYSPILKDAREQGYEGLSIVAQNILSGKYYKPTPEEIGGF*
Ga0138381_135765	Ga0138381_1357651	F021393	KEQVEDTEITKSDEDVQRVETEKSFQETVKSGFDTLTDVVQSIAESQKATQETLGGLENRLKALETPTDLPLSPKGTAAGDDVGAKVTVPRDPYPQGTQAGLDDDRNGEGKPASDKGGLKMQKKSDDTELIEKAEHTFSTETPRPNASLETVDKSIKDTSMILKDARAEGFE
Ga0138381_136622	Ga0138381_1366222	F060053	MAFGLIPAGTITRETIISTRRIPVAASESISKGQVCELVGGYLKKSPTTATVDVNHFVALETIDNSGGSAGDLSAPVAVSGHYVTVVADGAIRPGARLQISASTAGQVITTGGGGNKQIGWYTGKEGGIIAKAATTPFQETFTDDSDFPPVACADGDVIEIYLGL*
Ga0138381_142634	Ga0138381_1426342	F062832	DGLSEQLGKFADHLKGIDSRIKALETPTDLPAAPAGTTGSDNDVGADITVPAQPYPQGDQAGLDDDRQNDNAPAGDSAPSMQEKPLHKNETPRLVSKSQHTFTTETPRPNAAVEKAGESQTDFSPILKDARAEGYEGLSQVARNILKGKYYTPTDEEVRGLKWFK*
Ga0138381_149826	Ga0138381_1498262	F036429	MATVKSVEITNLDATPRTTLEAASAGGKLRVWMDTIAVGTGDLDDDDIIILGQVPSNAKIVSLMIYNDDLNSGSGTHNVGLYNGPQAYTISGTTTDAAAVIDEDCYVTDSTAFRAAVTEPVELLAETRNINAIANFVWEDGGLAEDPKVPLR
Ga0138381_154483	Ga0138381_1544832	F067833	VVMASVSPVVMFVMAQVNFVTLDGVLTVLMVQMKA*
Ga0138381_156571	Ga0138381_1565711	F065861	IVIRRKISLIYRKNSFIFNLPFRVVLFMIRGEIIGRNNISAALPTLEEGLLHKNNLVINCLT*
Ga0138381_161934	Ga0138381_1619341	F063612	APKSVAGGSPADDAALVAEESGLKIPRRGAASEEDVYSPAL*
Ga0138381_167787	Ga0138381_1677871	F063612	RSVAEGSPADNATSVVAESGLKIPRREMTSKEGVDSSVL*
Ga0138381_168490	Ga0138381_1684901	F052640	MVQIRTIDELEALYYGYNRNLLRKADAPITTSTVGV
Ga0138381_168490	Ga0138381_1684902	F042932	ENQVDQEVITKSDEEEQISYENTVAKSIDTLADVVQSIAESQQGVEKAISTIVDRVKALETPSDLPLSPKGTQGGDDVGAKVTAPNDPYPVGDQVGLDSDRRSKNPPKKDPAGLKMQEKPVNKAYEDEPEEDEVEKSYPEMVTKSNHEFSTETPRPGSAPETVDKSFTKDFSPILKDARENGYEGLSIVAQNILSGKYYKPTPEEVGGY*
Ga0138381_170240	Ga0138381_1702401	F027996	AKYNWAISDAITATFGSQAEPYGIAWGSHRPSNNSFVSAPRDHNISDGVGISTSAYGIGASAFYGDDNYWAARASYDVSAFGINSTIGLSVNSDDAQLIDASTNGSALGIPYESSFEYDLANDGAYWLRGVVTPDFAKGAYGIIGYNSDEEVTYGIGYNASDNFKVATELSGDGDTVIRFSYSF*
Ga0138381_171522	Ga0138381_1715221	F055787	KPEMVTKSEHEFSTETPRPGSAPETVDKSFAKDFSPILKDARAEGYEGLSTVARNILSGKYYKPTPEEIGGF*
Ga0138381_175116	Ga0138381_1751161	F020371	RQRQAALRSSVNSAVDIVNVWETVLGKRDRVYAAKNLAKEIAVPNLLISIDTVTKFTGMEKLDEGMRARVKELPYTRATFTAAKYGLKFIIHEEARLKNVHNVLQDSIQVASTKIEQRQSFDVIDVVETNTAQAAIAVWDTFVASTDRSTGDPTIDIGIASLNIEGSGVGGRLNRVGMHQLTFAKFTGNSFLRGVASVGARDYNYEPGTSELVGIPGIGLVLDNGIKQGDVHCVDTELEPNCALFQGPQRVGSQHDEETGDDKYFIIDYHLAAKIQAETGRLITGAITPIDW
Ga0138381_180023	Ga0138381_1800231	F076161	RLTPRNRRAEAHRFMKSINFSSRCPKTGFRAFAEKPVAKSLLLPQFSGQKMLPQGASIPNRLTAWTVPQIAADPKERSNLHSSPTNPDAPAGKPV*