3300011288: Marine microbial communities from the Southern Atlantic ocean - KN S17 NADW_A metaT (Metagenome Metatranscriptome) (version 2)

Overview

Basic Information

• IMG/M Taxon OID: 3300011288
• GOLD Reference (Study | Sequencing Project | Analysis Project): Gs0114292 | Gp0125904 | Ga0138391
• Sample Name: Marine microbial communities from the Southern Atlantic ocean - KN S17 NADW_A metaT (Metagenome Metatranscriptome) (version 2)
• Sequencing Status: Permanent Draft
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Published?: N
• Use Policy: Open

Dataset Contents

• Total Genome Size: 33906683
• Sequencing Scaffolds: 15
• Novel Protein Genes: 15
• Associated Families: 14

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
Not Available	7
All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Pelagibacterales → unclassified Pelagibacterales → Pelagibacterales bacterium	2
All Organisms → cellular organisms → Bacteria → unclassified Bacteria → bacterium TMED161	1
All Organisms → cellular organisms → Eukaryota → Opisthokonta → Fungi → Fungi incertae sedis → Mucoromycota → Glomeromycotina → Glomeromycetes → Diversisporales → Diversisporaceae → Diversispora → Diversispora epigaea	1
All Organisms → cellular organisms → Bacteria → FCB group → Candidatus Marinimicrobia → Candidatus Marinimicrobia bacterium	1
All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium MarineAlpha1_Bin1	1
All Organisms → Viruses → Predicted Viral	2

Ecosystem and Geography

Ecosystem Assignment (GOLD)

• Name: Marine Microbial Communities From The Southern Atlantic Ocean Transect To Study Dissolved Organic Matter And Carbon Cycling
• Type: Environmental
• Taxonomy: Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Microbial Communities From The Southern Atlantic Ocean Transect To Study Dissolved Organic Matter And Carbon Cycling

Alternative Ecosystem Assignments

• Environment Ontology (ENVO): marine biome → marine water body → sea water
• Earth Microbiome Project Ontology (EMPO): Free-living → Saline → Water (saline)

Location Information

• Location: Southern Atlantic Ocean
• Coordinates
  • Lat. (^o): -28.2362
  • Long. (^o): -38.4949
  • Alt. (m): N/A
  • Depth (m): N/A

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000344	Metagenome / Metatranscriptome	1257	Y
F021393	Metagenome / Metatranscriptome	219	N
F025846	Metagenome / Metatranscriptome	200	Y
F042932	Metagenome / Metatranscriptome	157	N
F045048	Metagenome / Metatranscriptome	153	Y
F049945	Metagenome / Metatranscriptome	146	Y
F050311	Metagenome / Metatranscriptome	145	Y
F060053	Metagenome / Metatranscriptome	133	N
F062832	Metagenome / Metatranscriptome	130	N
F067833	Metagenome / Metatranscriptome	125	Y
F071317	Metagenome / Metatranscriptome	122	N
F076161	Metagenome / Metatranscriptome	118	N
F093997	Metagenome / Metatranscriptome	106	N
F105006	Metatranscriptome	100	Y

Associated Scaffolds

Scaffold	Taxonomy	Length
Ga0138391_108094	Not Available	598
Ga0138391_108546	Not Available	849
Ga0138391_111863	Not Available	1660
Ga0138391_111905	Not Available	558
Ga0138391_120601	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Pelagibacterales → unclassified Pelagibacterales → Pelagibacterales bacterium	756
Ga0138391_124606	Not Available	791
Ga0138391_127406	All Organisms → cellular organisms → Bacteria → unclassified Bacteria → bacterium TMED161	528
Ga0138391_131312	Not Available	1047
Ga0138391_138286	All Organisms → cellular organisms → Eukaryota → Opisthokonta → Fungi → Fungi incertae sedis → Mucoromycota → Glomeromycotina → Glomeromycetes → Diversisporales → Diversisporaceae → Diversispora → Diversispora epigaea	619
Ga0138391_146612	Not Available	857
Ga0138391_150849	All Organisms → cellular organisms → Bacteria → FCB group → Candidatus Marinimicrobia → Candidatus Marinimicrobia bacterium	648
Ga0138391_157666	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium MarineAlpha1_Bin1	710
Ga0138391_165718	All Organisms → Viruses → Predicted Viral	1730
Ga0138391_166134	All Organisms → Viruses → Predicted Viral	1767
Ga0138391_168577	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Pelagibacterales → unclassified Pelagibacterales → Pelagibacterales bacterium	701

Sequences

Scaffold ID	Protein ID	Family	Sequence
Ga0138391_108094	Ga0138391_1080941	F049945	GEFSSDVTFGDATAFSTPYTGLNISGDGWELSTNLSDGDVIVEEAKYNWAISDAITATFGSQAEPYGIAWGLHRPSGNSFVSAPRDHSISDGVGISTSAYGVGANAFYGDDNYWAARASYDVSAFGINSTIGLSVNSDDAQLIDVSKSGAVLGIPFNSSFEYDLANDGAYWLRSDWSPDFAKGASALVGYNSDGEVSYG
Ga0138391_108546	Ga0138391_1085462	F000344	MRPKHPRAAESGVGKHTARESEGAKACAIGKERVANAHPH
Ga0138391_111863	Ga0138391_1118631	F062832	ETPTDLPLKTAGTTGSDNDVGADVTAPAKPYPQGDQAGLDDDRVDDNKPENDAAPSMQEKPLNKVSEPKLVAKSQHTFSTETPRPNAAIEKAGGSQTDFSPILKDARAEGFEGLSNVARNILKGKYYTPTDEEVRGF*
Ga0138391_111905	Ga0138391_1119051	F105006	MSMNKFTLLNSNGVARPGFYIEILEFPSGNTPGQAVYVDGRGTDDMINFIYNPETDLLDAWHIRSPDNKFTMTPITVSNRVVGLDVRFTHIPNFVAHFALDLSTEEEEVVYDVLAPPVHLAELTSVNF*
Ga0138391_120601	Ga0138391_1206011	F050311	MKALRTKICAYAIALLASIGFATPTLAGSSDFAGIFIAGHAELNVVAIDGSSRTGSGSDGGITGKGGSDDIEITQGTIGGFAPTAGYEIGFNLPLGDTFFLTVGFADGGGDSAAIAKVDDGAPTSGTDVSLHASNPS*
Ga0138391_124606	Ga0138391_1246061	F071317	KITAVGLITLFAGVTAAPLIHLDECNMPCCAGLATSCCDMDQEVACPTISDCGSSIFVLIVSGPFHKPELKSSDSISQRFVTDLDIFKIETNYVTSFGNYDPGPMASLNLPLLI*
Ga0138391_127406	Ga0138391_1274063	F025846	DMQTVQMVVMKLTVLLHHVKTKVYGIVAMANVFQHHMYVMAQVNSVTQAGLQTVLMVQMKA*
Ga0138391_131312	Ga0138391_1313121	F093997	PYPQGTQAGLDDDRSGGDKPVSDKGGLKMQKKSEPEDTELLEKSEHNFTTETPRPNASPETVEKSYQTDFSPILKDAREVGHEGLSKVAQNILSGKYYKPSDDEVRGF*
Ga0138391_138286	Ga0138391_1382861	F045048	VFSKGNSNAFIASIPIGGHCAPNSIVGDKALWKYAQKIAKKNKASDTINKATPIFKPLCTAKV*
Ga0138391_146612	Ga0138391_1466122	F060053	MAFGLIPSGTITRETIISTRRIPVAASETITKGQVCELVSGYLKKSPTTATVDVNHFVALEAIDNSSGSAGDLSAPVAVSGHYVTVVADGVIRPGARLQISASTAGQVITTGGGGNKQIGWYTGKEGGIIDEDSSTPYQETFVDNGDFPPVACADGDIIEIYLGL*
Ga0138391_150849	Ga0138391_1508492	F067833	VKIKDYGIVAMANVFQVVMYVMDQVNSVTQDGLLTVLMVQMKA*
Ga0138391_157666	Ga0138391_1576662	F076161	RCPKTGFRAFAEKPVAKSLLLPQFGGQKMPPQGASIPNLLTAWTVPQTAADPKERSNLLSSPTNPDAPTGKPI*
Ga0138391_165718	Ga0138391_1657181	F042932	ESQQGVEKAITEMHNRVKALETPTDLPLKPKGTQGGDDVGAKVTAPNDPYPVGQQAKLDSDRTDRNPPKKDPAGLKMQEKPVNKAEPEEVVEGFEPEMVTKSQHEFSTETPRPGSAVETVDKSFAKDFSPILKDARAEGYEGLSTVARNILSGKYYKPTPEEIGGF*
Ga0138391_166134	Ga0138391_1661341	F021393	IQRVETEKSFQETVKSGFDTLTEVVQSIAESQKTTQEVLGGLDNRLKALETPSDLPLTPKGTAAGDDVGAKVTVPRDPYPQGTQAGLDDDRSGEDKPISDKGGLKMQKKSDDTELIEKAEHTFSTETPRPNASLETVDKSIKDTSMILKDARAEGFEGLSQVARNILNGKYYVPSDDEVRGF*
Ga0138391_168577	Ga0138391_1685772	F050311	MKALRTKICAYAIALLASVGFATSTLAGSSDFSGIFIAGHAELNVVAINGSSTTKGQGVTAQGTGGTDNTETTQGTIGGFAPTAGYEIGFNLPLGDTFFITVGYADGGGQSAAIAKVDDGAPTSGTDVSLHASNPSWWYIAPAISIFDNSAVYFKWG